Clone Sequence Records
BO13605.3prime Sequence
743 bp (742 high quality bases) assembled on 2006-05-08
> BO13605.3prime
ATGGTCTAGAAAGCTTGCGAAACCCTGGAAACTCCGGCGGAACTCTTCCT
CGAAATCCGCGTGGCCAAGATCAAGCTTGTGGTAGTCGGTGAATCCCTCG
CGATCCAGCTTGGCCTGGGCCCAAAGGATTAGCTTGATGAGGAACATCAT
TCTTGGCTCCATGGGCTCCTCTTTGCTCTTACTCTCATCCTCGTGGCAGC
GTAACATGGCTGCATTCATTTCACCGGCCACCTTTTGGCGATATGAGTAG
TACATCAGCTCCCCGTAGGGACTGTATTCCGGCCGATCGAAGGCCAGCAG
ACCCATGGTCCGCTCCACTTCGTGGTAGTGACTTGGATCGACCTTGGAAA
AGCCCGCTGCCTTGCTCTGGGCAAACTTCAAGGCCTTCTCCATCTTCTGA
TCCCTGATCATCTCGATCAGGCGCAACTGTTGCATGTGAAAAAATACATA
GTTGTCGGTCTCGAAGAGCCGTGGATAGATCCGTGTGGCCAGGTCCATGG
CGTACTTGACCTGACCCACACGCACGGCATCCTGAATCCTTAAACGATCC
CCGATGGTGTCCATGTGTGGACCCGGCTTCACAGACGCCTCGGTCATGAA
ACGCTTGGCGGCCTCTTGATATCCCTCTGTAACCAGATAGTTCATCACCA
GGCGATTCAGGTCCGCCTGCCGGCACTGGAAGCTCATCATCCGATGGGGC
CACGAAGTGGATGGTCTATACTCGGCCATGTCGACTGATAACT
BO13605.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-PA | 714 | CG18467-RA | 1..711 | 729..19 | 3555 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:10:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-RA | 1462 | CG18467-RA | 549..1259 | 729..19 | 3555 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:10:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17441671..17442280 | 628..19 | 3050 | 100 | Minus |
2R | 25286936 | 2R | 17441515..17441617 | 729..627 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:10:11 has no hits.
BO13605.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:53 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-PA | 1..714 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:23 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-PA | 1..714 | 15..729 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:48 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 547..1263 | 14..732 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:33 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 547..1263 | 14..732 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:33 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17441513..17441617 | 627..732 | 99 | -> | Minus |
2R | 17441673..17442284 | 14..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:48 Download gff for
BO13605.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13329018..13329122 | 627..732 | 99 | -> | Minus |
arm_2R | 13329178..13329789 | 14..626 | 99 | | Minus |
BO13605.5prime Sequence
743 bp (742 high quality bases) assembled on 2006-05-08
> BO13605.5prime
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGG
GATTCACCGACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAA
GAGTTCCGCCGGAGTTTCCAGGGTTTCGCAAGCTTTCTAGACC
BO13605.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-PA | 714 | CG18467-RA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-RA | 1462 | CG18467-RA | 549..1259 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17441671..17442280 | 118..727 | 3050 | 100 | Plus |
2R | 25286936 | 2R | 17441515..17441617 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:27:49 has no hits.
BO13605.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:54 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-PA | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:25 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-PA | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:44 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 547..1263 | 14..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:30 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 547..1263 | 14..732 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:30 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17441513..17441617 | 14..119 | 99 | -> | Plus |
2R | 17441673..17442284 | 120..732 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:44 Download gff for
BO13605.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13329018..13329122 | 14..119 | 99 | -> | Plus |
arm_2R | 13329178..13329789 | 120..732 | 99 | | Plus |
BO13605.complete Sequence
745 bp assembled on 2006-10-11
GenBank Submission: FJ632853
> BO13605.complete
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGG
GATTCACCGACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAA
GAGTTCCGCCGGAGTTTCCAGGGTTTCGCAAGCTTTCTAGACCAT
BO13605.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-RA | 714 | CG18467-PA | 1..711 | 17..727 | 3555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-RA | 1462 | CG18467-RA | 549..1259 | 17..727 | 3555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17441671..17442280 | 118..727 | 3050 | 100 | Plus |
2R | 25286936 | 2R | 17441515..17441617 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:28:23 has no hits.
BO13605.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:20 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 1..714 | 17..731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:32 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 240..956 | 14..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:06 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 549..1259 | 17..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:21 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 240..956 | 14..732 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:47 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18467-RA | 549..1259 | 17..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:47 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17441515..17441617 | 17..119 | 100 | -> | Plus |
2R | 17441673..17442280 | 120..729 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:06 Download gff for
BO13605.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13329020..13329122 | 17..119 | 100 | -> | Plus |
arm_2R | 13329178..13329785 | 120..729 | 99 | | Plus |
BO13605.pep Sequence
Translation from 16 to 745
> BO13605.pep
MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV
KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ
QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP
EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL
ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGFASFLDH
BO13605.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18467-PA | 237 | CG18467-PA | 1..237 | 1..237 | 1251 | 100 | Plus |
CG6617-PA | 225 | CG6617-PA | 15..205 | 10..209 | 504 | 48 | Plus |