Clone BO13605 Report

Search the DGRC for BO13605

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:5
Vector:pDNR-Dual
Associated Gene/TranscriptCG18467-RA
Protein status:BO13605.pep: validated full length
Sequenced Size:745

Clone Sequence Records

BO13605.3prime Sequence

743 bp (742 high quality bases) assembled on 2006-05-08

> BO13605.3prime
ATGGTCTAGAAAGCTTGCGAAACCCTGGAAACTCCGGCGGAACTCTTCCT
CGAAATCCGCGTGGCCAAGATCAAGCTTGTGGTAGTCGGTGAATCCCTCG
CGATCCAGCTTGGCCTGGGCCCAAAGGATTAGCTTGATGAGGAACATCAT
TCTTGGCTCCATGGGCTCCTCTTTGCTCTTACTCTCATCCTCGTGGCAGC
GTAACATGGCTGCATTCATTTCACCGGCCACCTTTTGGCGATATGAGTAG
TACATCAGCTCCCCGTAGGGACTGTATTCCGGCCGATCGAAGGCCAGCAG
ACCCATGGTCCGCTCCACTTCGTGGTAGTGACTTGGATCGACCTTGGAAA
AGCCCGCTGCCTTGCTCTGGGCAAACTTCAAGGCCTTCTCCATCTTCTGA
TCCCTGATCATCTCGATCAGGCGCAACTGTTGCATGTGAAAAAATACATA
GTTGTCGGTCTCGAAGAGCCGTGGATAGATCCGTGTGGCCAGGTCCATGG
CGTACTTGACCTGACCCACACGCACGGCATCCTGAATCCTTAAACGATCC
CCGATGGTGTCCATGTGTGGACCCGGCTTCACAGACGCCTCGGTCATGAA
ACGCTTGGCGGCCTCTTGATATCCCTCTGTAACCAGATAGTTCATCACCA
GGCGATTCAGGTCCGCCTGCCGGCACTGGAAGCTCATCATCCGATGGGGC
CACGAAGTGGATGGTCTATACTCGGCCATGTCGACTGATAACT

BO13605.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-PA 714 CG18467-RA 1..711 729..19 3555 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:10:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-RA 1462 CG18467-RA 549..1259 729..19 3555 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17441671..17442280 628..19 3050 100 Minus
2R 25286936 2R 17441515..17441617 729..627 515 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:10:11 has no hits.

BO13605.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:53 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-PA 1..714 15..729 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:23 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-PA 1..714 15..729 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:48 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 547..1263 14..732 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:33 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 547..1263 14..732 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:33 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17441513..17441617 627..732 99 -> Minus
2R 17441673..17442284 14..626 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:48 Download gff for BO13605.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13329018..13329122 627..732 99 -> Minus
arm_2R 13329178..13329789 14..626 99   Minus

BO13605.5prime Sequence

743 bp (742 high quality bases) assembled on 2006-05-08

> BO13605.5prime
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGG
GATTCACCGACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAA
GAGTTCCGCCGGAGTTTCCAGGGTTTCGCAAGCTTTCTAGACC

BO13605.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-PA 714 CG18467-RA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-RA 1462 CG18467-RA 549..1259 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17441671..17442280 118..727 3050 100 Plus
2R 25286936 2R 17441515..17441617 17..119 515 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:27:49 has no hits.

BO13605.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:54 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-PA 1..714 17..731 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:25 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-PA 1..714 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:44 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 547..1263 14..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:30 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 547..1263 14..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:30 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17441513..17441617 14..119 99 -> Plus
2R 17441673..17442284 120..732 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:44 Download gff for BO13605.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13329018..13329122 14..119 99 -> Plus
arm_2R 13329178..13329789 120..732 99   Plus

BO13605.complete Sequence

745 bp assembled on 2006-10-11

GenBank Submission: FJ632853

> BO13605.complete
GAAGTTATCAGTCGACATGGCCGAGTATAGACCATCCACTTCGTGGCCCC
ATCGGATGATGAGCTTCCAGTGCCGGCAGGCGGACCTGAATCGCCTGGTG
ATGAACTATCTGGTTACAGAGGGATATCAAGAGGCCGCCAAGCGTTTCAT
GACCGAGGCGTCTGTGAAGCCGGGTCCACACATGGACACCATCGGGGATC
GTTTAAGGATTCAGGATGCCGTGCGTGTGGGTCAGGTCAAGTACGCCATG
GACCTGGCCACACGGATCTATCCACGGCTCTTCGAGACCGACAACTATGT
ATTTTTTCACATGCAACAGTTGCGCCTGATCGAGATGATCAGGGATCAGA
AGATGGAGAAGGCCTTGAAGTTTGCCCAGAGCAAGGCAGCGGGCTTTTCC
AAGGTCGATCCAAGTCACTACCACGAAGTGGAGCGGACCATGGGTCTGCT
GGCCTTCGATCGGCCGGAATACAGTCCCTACGGGGAGCTGATGTACTACT
CATATCGCCAAAAGGTGGCCGGTGAAATGAATGCAGCCATGTTACGCTGC
CACGAGGATGAGAGTAAGAGCAAAGAGGAGCCCATGGAGCCAAGAATGAT
GTTCCTCATCAAGCTAATCCTTTGGGCCCAGGCCAAGCTGGATCGCGAGG
GATTCACCGACTACCACAAGCTTGATCTTGGCCACGCGGATTTCGAGGAA
GAGTTCCGCCGGAGTTTCCAGGGTTTCGCAAGCTTTCTAGACCAT

BO13605.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:28:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-RA 714 CG18467-PA 1..711 17..727 3555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:28:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-RA 1462 CG18467-RA 549..1259 17..727 3555 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:28:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17441671..17442280 118..727 3050 100 Plus
2R 25286936 2R 17441515..17441617 17..119 515 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:28:23 has no hits.

BO13605.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:20 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 1..714 17..731 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:32 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 240..956 14..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:06 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 549..1259 17..729 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:21 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 240..956 14..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:22:47 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
CG18467-RA 549..1259 17..729 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:22:47 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17441515..17441617 17..119 100 -> Plus
2R 17441673..17442280 120..729 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:06 Download gff for BO13605.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13329020..13329122 17..119 100 -> Plus
arm_2R 13329178..13329785 120..729 99   Plus

BO13605.pep Sequence

Translation from 16 to 745

> BO13605.pep
MAEYRPSTSWPHRMMSFQCRQADLNRLVMNYLVTEGYQEAAKRFMTEASV
KPGPHMDTIGDRLRIQDAVRVGQVKYAMDLATRIYPRLFETDNYVFFHMQ
QLRLIEMIRDQKMEKALKFAQSKAAGFSKVDPSHYHEVERTMGLLAFDRP
EYSPYGELMYYSYRQKVAGEMNAAMLRCHEDESKSKEEPMEPRMMFLIKL
ILWAQAKLDREGFTDYHKLDLGHADFEEEFRRSFQGFASFLDH

BO13605.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG18467-PA 237 CG18467-PA 1..237 1..237 1251 100 Plus
CG6617-PA 225 CG6617-PA 15..205 10..209 504 48 Plus