Clone BO13606 Report

Search the DGRC for BO13606

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptCG6426-RA
Protein status:BO13606.pep: validated full length
Sequenced Size:517

Clone Sequence Records

BO13606.3prime Sequence

515 bp (514 high quality bases) assembled on 2006-05-08

> BO13606.3prime
ATGGTCTAGAAAGCTTGCTATGCTAGAGCGCACGTCGATCTGCTGGAACG
AATTAAGGCAGTTGGTCAGCTGCGTCTGGTACTGGTAGCTCAGCTCGCCC
TTGCATCCATAGCCGCCCAGCTTGTGGATGGCAGCAAAGTCGTAGCAATC
GATGGCGTTGTCTCCATTGCAGTCCTGGCCGAACTTGGTCATGTAATTCT
GGATCGTGTTGGCCGCGCAGTAGGGATCGTTCACGCAATTGGCATACGCA
TCCTCCGACTGGGGACTCTCGTTGCCCAAGGTCAGCTTGCCGCCGTCGGC
CCAATATGCCCAGGTGATGCGAAACAGGCCGCAGACTCCGCCGCCGCAGT
AACGTGTCTGGTTGCATCCACTGATGGCCTCGCAGATGCATCCCAGGCAC
ACATCAGTCACCGGCTTATCCTGAGCTTGAATGAGGGCTGCGAATCCCAG
ACACAAAAGAGCGCCAATAGCCAAAGTGCAGCACAATTTGTTGGCAGCCA
TGTCGACTGATAACT

BO13606.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 486 CG6426-RA 1..483 501..19 2415 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..602 501..19 2415 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:47:53
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871740 249..19 1155 100 Minus
2R 25286936 2R 16871269..16871440 420..249 860 100 Minus
2R 25286936 2R 16869521..16869602 501..420 410 100 Minus
Blast to na_te.dros performed on 2015-01-31 11:47:56 has no hits.

BO13606.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:55 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 15..501 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:26 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 15..501 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:40 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..605 15..501 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:42 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..605 15..501 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:42 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 420..501 100 -> Minus
2R 16871270..16871440 249..419 100 -> Minus
2R 16871511..16871743 15..248 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:40 Download gff for BO13606.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12757026..12757107 420..501 100 -> Minus
arm_2R 12758775..12758945 249..419 100 -> Minus
arm_2R 12759016..12759248 15..248 99   Minus

BO13606.5prime Sequence

515 bp (514 high quality bases) assembled on 2006-05-08

> BO13606.5prime
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAG
CAAGCTTTCTAGACC

BO13606.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 486 CG6426-RA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..602 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871740 269..499 1155 100 Plus
2R 25286936 2R 16871269..16871440 98..269 860 100 Plus
2R 25286936 2R 16869521..16869602 17..98 410 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:49:21 has no hits.

BO13606.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:56 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:28 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-PA 1..486 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:42 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..605 17..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:14 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..605 17..503 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:14 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 17..98 100 -> Plus
2R 16871270..16871440 99..269 100 -> Plus
2R 16871511..16871743 270..503 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:42 Download gff for BO13606.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12757026..12757107 17..98 100 -> Plus
arm_2R 12758775..12758945 99..269 100 -> Plus
arm_2R 12759016..12759248 270..503 99   Plus

BO13606.complete Sequence

517 bp assembled on 2006-10-11

GenBank Submission: FJ632854

> BO13606.complete
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAG
CAAGCTTTCTAGACCAT

BO13606.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 486 CG6426-PA 1..483 17..499 2415 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-RA 713 CG6426-RA 120..602 17..499 2415 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16871510..16871740 269..499 1155 100 Plus
2R 25286936 2R 16871269..16871440 98..269 860 100 Plus
2R 25286936 2R 16869521..16869602 17..98 410 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:44:18 has no hits.

BO13606.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:22 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 1..486 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:33 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 130..615 17..503 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:52 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..602 17..501 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:22 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 130..615 17..503 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:45 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
CG6426-RA 120..602 17..501 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:45 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16869521..16869602 17..98 100 -> Plus
2R 16871270..16871440 99..269 100 -> Plus
2R 16871511..16871740 270..501 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:52 Download gff for BO13606.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12757026..12757107 17..98 100 -> Plus
arm_2R 12758775..12758945 99..269 100 -> Plus
arm_2R 12759016..12759245 270..501 99   Plus

BO13606.pep Sequence

Translation from 16 to 517

> BO13606.pep
MAANKLCCTLAIGALLCLGFAALIQAQDKPVTDVCLGCICEAISGCNQTR
YCGGGVCGLFRITWAYWADGGKLTLGNESPQSEDAYANCVNDPYCAANTI
QNYMTKFGQDCNGDNAIDCYDFAAIHKLGGYGCKGELSYQYQTQLTNCLN
SFQQIDVRSSIASFLDH

BO13606.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6426-PA 161 CG6426-PA 1..161 1..161 894 100 Plus
CG6421-PA 161 CG6421-PA 11..156 15..153 448 52.7 Plus
CG6435-PA 163 CG6435-PA 19..149 25..155 438 55.7 Plus
CG6429-PA 159 CG6429-PA 20..157 24..160 425 49.3 Plus
CG14823-PA 263 CG14823-PA 164..257 57..149 162 34.4 Plus