Clone Sequence Records
BO13606.3prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-08
> BO13606.3prime
ATGGTCTAGAAAGCTTGCTATGCTAGAGCGCACGTCGATCTGCTGGAACG
AATTAAGGCAGTTGGTCAGCTGCGTCTGGTACTGGTAGCTCAGCTCGCCC
TTGCATCCATAGCCGCCCAGCTTGTGGATGGCAGCAAAGTCGTAGCAATC
GATGGCGTTGTCTCCATTGCAGTCCTGGCCGAACTTGGTCATGTAATTCT
GGATCGTGTTGGCCGCGCAGTAGGGATCGTTCACGCAATTGGCATACGCA
TCCTCCGACTGGGGACTCTCGTTGCCCAAGGTCAGCTTGCCGCCGTCGGC
CCAATATGCCCAGGTGATGCGAAACAGGCCGCAGACTCCGCCGCCGCAGT
AACGTGTCTGGTTGCATCCACTGATGGCCTCGCAGATGCATCCCAGGCAC
ACATCAGTCACCGGCTTATCCTGAGCTTGAATGAGGGCTGCGAATCCCAG
ACACAAAAGAGCGCCAATAGCCAAAGTGCAGCACAATTTGTTGGCAGCCA
TGTCGACTGATAACT
BO13606.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 486 | CG6426-RA | 1..483 | 501..19 | 2415 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 11:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..602 | 501..19 | 2415 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 11:47:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871740 | 249..19 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 16871269..16871440 | 420..249 | 860 | 100 | Minus |
2R | 25286936 | 2R | 16869521..16869602 | 501..420 | 410 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 11:47:56 has no hits.
BO13606.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:55 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 15..501 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:26 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 15..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-06 23:52:40 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..605 | 15..501 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 12:58:42 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..605 | 15..501 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 12:58:42 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 420..501 | 100 | -> | Minus |
2R | 16871270..16871440 | 249..419 | 100 | -> | Minus |
2R | 16871511..16871743 | 15..248 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-06 23:52:40 Download gff for
BO13606.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12757026..12757107 | 420..501 | 100 | -> | Minus |
arm_2R | 12758775..12758945 | 249..419 | 100 | -> | Minus |
arm_2R | 12759016..12759248 | 15..248 | 99 | | Minus |
BO13606.5prime Sequence
515 bp (514 high quality bases) assembled on 2006-05-08
> BO13606.5prime
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAG
CAAGCTTTCTAGACC
BO13606.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 486 | CG6426-RA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..602 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871740 | 269..499 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 16871269..16871440 | 98..269 | 860 | 100 | Plus |
2R | 25286936 | 2R | 16869521..16869602 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:49:21 has no hits.
BO13606.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:56 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:28 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-PA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:42 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..605 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:14 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..605 | 17..503 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:14 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 17..98 | 100 | -> | Plus |
2R | 16871270..16871440 | 99..269 | 100 | -> | Plus |
2R | 16871511..16871743 | 270..503 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:42 Download gff for
BO13606.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12757026..12757107 | 17..98 | 100 | -> | Plus |
arm_2R | 12758775..12758945 | 99..269 | 100 | -> | Plus |
arm_2R | 12759016..12759248 | 270..503 | 99 | | Plus |
BO13606.complete Sequence
517 bp assembled on 2006-10-11
GenBank Submission: FJ632854
> BO13606.complete
GAAGTTATCAGTCGACATGGCTGCCAACAAATTGTGCTGCACTTTGGCTA
TTGGCGCTCTTTTGTGTCTGGGATTCGCAGCCCTCATTCAAGCTCAGGAT
AAGCCGGTGACTGATGTGTGCCTGGGATGCATCTGCGAGGCCATCAGTGG
ATGCAACCAGACACGTTACTGCGGCGGCGGAGTCTGCGGCCTGTTTCGCA
TCACCTGGGCATATTGGGCCGACGGCGGCAAGCTGACCTTGGGCAACGAG
AGTCCCCAGTCGGAGGATGCGTATGCCAATTGCGTGAACGATCCCTACTG
CGCGGCCAACACGATCCAGAATTACATGACCAAGTTCGGCCAGGACTGCA
ATGGAGACAACGCCATCGATTGCTACGACTTTGCTGCCATCCACAAGCTG
GGCGGCTATGGATGCAAGGGCGAGCTGAGCTACCAGTACCAGACGCAGCT
GACCAACTGCCTTAATTCGTTCCAGCAGATCGACGTGCGCTCTAGCATAG
CAAGCTTTCTAGACCAT
BO13606.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 486 | CG6426-PA | 1..483 | 17..499 | 2415 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-RA | 713 | CG6426-RA | 120..602 | 17..499 | 2415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16871510..16871740 | 269..499 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 16871269..16871440 | 98..269 | 860 | 100 | Plus |
2R | 25286936 | 2R | 16869521..16869602 | 17..98 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:44:18 has no hits.
BO13606.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:22 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 1..486 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:33 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 130..615 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:52 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..602 | 17..501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:22 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 130..615 | 17..503 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:45 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6426-RA | 120..602 | 17..501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:45 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16869521..16869602 | 17..98 | 100 | -> | Plus |
2R | 16871270..16871440 | 99..269 | 100 | -> | Plus |
2R | 16871511..16871740 | 270..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:52 Download gff for
BO13606.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12757026..12757107 | 17..98 | 100 | -> | Plus |
arm_2R | 12758775..12758945 | 99..269 | 100 | -> | Plus |
arm_2R | 12759016..12759245 | 270..501 | 99 | | Plus |
BO13606.pep Sequence
Translation from 16 to 517
> BO13606.pep
MAANKLCCTLAIGALLCLGFAALIQAQDKPVTDVCLGCICEAISGCNQTR
YCGGGVCGLFRITWAYWADGGKLTLGNESPQSEDAYANCVNDPYCAANTI
QNYMTKFGQDCNGDNAIDCYDFAAIHKLGGYGCKGELSYQYQTQLTNCLN
SFQQIDVRSSIASFLDH
BO13606.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:01:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6426-PA | 161 | CG6426-PA | 1..161 | 1..161 | 894 | 100 | Plus |
CG6421-PA | 161 | CG6421-PA | 11..156 | 15..153 | 448 | 52.7 | Plus |
CG6435-PA | 163 | CG6435-PA | 19..149 | 25..155 | 438 | 55.7 | Plus |
CG6429-PA | 159 | CG6429-PA | 20..157 | 24..160 | 425 | 49.3 | Plus |
CG14823-PA | 263 | CG14823-PA | 164..257 | 57..149 | 162 | 34.4 | Plus |