Clone BO13608 Report

Search the DGRC for BO13608

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptRpL18-RA
Protein status:BO13608.pep: validated full length
Sequenced Size:598

Clone Sequence Records

BO13608.3prime Sequence

596 bp (595 high quality bases) assembled on 2006-05-08

> BO13608.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTAGCCGCAGCTGGAGCGACGACCAC
GAGCACGCTCGAACTTGCGTCCCTTAGAGCGGACATAGGGGCGGGTGTGC
GAGTGGGGCACACCGGGAGCCTTGCCGAAGTGCTTGCAGGCGGTGCGGGC
GGTACGCCTGCCCTGCAGCAGCAGCGTGTTCTTGCCGGTGGGCGATCGGA
GAGCCAGTTGATCGAAGGTCAGGACCTCACCGCCGGCCTTCAGGATGCGC
TCCCTGGCGGTCTGCGTGACGTGCAGGGCGCACACGGTGAGCTTGGGCAC
CACCAGGAGGCGGGCATCGTCGGTGACGGTGCCGACGACCACGATGGTAG
ACTCCGGCTGGTTGGCGGCCTTGAAGAAGCGAGCGATGCGCTGAAGCGAT
AGCGGCGGCCTGTTGATCTTGCTCATGAACAAACGCTTCAGGATGATGCG
GTTGAACTTCTTGTTGGTGCGGCGCTGAAGGAAGCGGTACAGCTTGACCA
GCAGGCGCAGGTACACATCCTGGGATTTGGGCTCGGTTCTGCGAACCTTG
CGATCGTACTTGTGGTTGATATCAATACCCATGTCGACTGATAACT

BO13608.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG8615-PA 567 RpL18-RA 1..564 582..19 2820 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..655 582..19 2820 100 Minus
RpL18-RC 694 CG8615-RC 30..593 582..19 2820 100 Minus
RpL18-RA 724 CG8615-RA 60..623 582..19 2820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:37:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240304..7240779 19..494 2380 100 Plus
3L 28110227 3L 7240855..7240942 493..580 440 100 Plus
Blast to na_te.dros performed on 2015-02-08 12:37:37 has no hits.

BO13608.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:59 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-PA 1..567 15..582 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:32 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8615-PA 1..567 15..582 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:08 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..632 8..590 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:48 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..632 8..590 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:48 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 7240295..7240777 8..492 98 <- Plus
3L 7240855..7240951 493..591 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:08 Download gff for BO13608.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233395..7233877 8..492 98 <- Plus
arm_3L 7233955..7234051 493..591 94   Plus

BO13608.5prime Sequence

596 bp (595 high quality bases) assembled on 2006-05-08

> BO13608.5prime
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGGCAAGCTTTCTAGACC

BO13608.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8615-PA 567 RpL18-RA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:56
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..655 17..580 2820 100 Plus
RpL18-RC 694 CG8615-RC 30..593 17..580 2820 100 Plus
RpL18-RA 724 CG8615-RA 60..623 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240304..7240779 580..105 2380 100 Minus
3L 28110227 3L 7240855..7240942 106..19 440 100 Minus
Blast to na_te.dros performed on 2015-02-13 02:13:53 has no hits.

BO13608.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:00 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-PA 1..567 17..584 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:33 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8615-PA 1..567 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:54 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..632 9..591 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:42:57 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 52..632 9..591 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:42:57 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 7240295..7240777 107..591 98 <- Minus
3L 7240855..7240951 8..106 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:54 Download gff for BO13608.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233395..7233877 107..591 98 <- Minus
arm_3L 7233955..7234051 8..106 94   Minus

BO13608.complete Sequence

598 bp assembled on 2006-10-11

GenBank Submission: FJ632855

> BO13608.complete
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGGCAAGCTTTCTAGACCAT

BO13608.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 567 CG8615-PB 1..564 17..580 2820 100 Plus
RpL18-RC 567 CG8615-PC 1..564 17..580 2820 100 Plus
RpL18-RA 567 CG8615-PA 1..564 17..580 2820 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-RB 756 CG8615-RB 92..655 17..580 2820 100 Plus
RpL18-RC 694 CG8615-RC 30..593 17..580 2820 100 Plus
RpL18-RA 724 CG8615-RA 60..623 17..580 2820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:09
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7240304..7240779 580..105 2380 100 Minus
3L 28110227 3L 7240855..7240942 106..19 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:52:10 has no hits.

BO13608.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:23 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 1..567 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:35 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 50..630 9..591 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:09 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 60..623 17..582 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:23 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 50..630 9..591 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:32 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
RpL18-RA 60..623 17..582 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:32 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7240302..7240777 107..582 99 <- Minus
3L 7240855..7240943 17..106 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:09 Download gff for BO13608.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7233402..7233877 107..582 99 <- Minus
arm_3L 7233955..7234043 17..106 98   Minus

BO13608.pep Sequence

Translation from 16 to 598

> BO13608.pep
MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR
LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV
CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK
HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKKASFLDH

BO13608.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL18-PB 188 CG8615-PB 1..188 1..188 963 100 Plus
RpL18-PC 188 CG8615-PC 1..188 1..188 963 100 Plus
RpL18-PA 188 CG8615-PA 1..188 1..188 963 100 Plus