Clone Sequence Records
BO13608.3prime Sequence
596 bp (595 high quality bases) assembled on 2006-05-08
> BO13608.3prime
ATGGTCTAGAAAGCTTGCCTTCTTGTAGCCGCAGCTGGAGCGACGACCAC
GAGCACGCTCGAACTTGCGTCCCTTAGAGCGGACATAGGGGCGGGTGTGC
GAGTGGGGCACACCGGGAGCCTTGCCGAAGTGCTTGCAGGCGGTGCGGGC
GGTACGCCTGCCCTGCAGCAGCAGCGTGTTCTTGCCGGTGGGCGATCGGA
GAGCCAGTTGATCGAAGGTCAGGACCTCACCGCCGGCCTTCAGGATGCGC
TCCCTGGCGGTCTGCGTGACGTGCAGGGCGCACACGGTGAGCTTGGGCAC
CACCAGGAGGCGGGCATCGTCGGTGACGGTGCCGACGACCACGATGGTAG
ACTCCGGCTGGTTGGCGGCCTTGAAGAAGCGAGCGATGCGCTGAAGCGAT
AGCGGCGGCCTGTTGATCTTGCTCATGAACAAACGCTTCAGGATGATGCG
GTTGAACTTCTTGTTGGTGCGGCGCTGAAGGAAGCGGTACAGCTTGACCA
GCAGGCGCAGGTACACATCCTGGGATTTGGGCTCGGTTCTGCGAACCTTG
CGATCGTACTTGTGGTTGATATCAATACCCATGTCGACTGATAACT
BO13608.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8615-PA | 567 | RpL18-RA | 1..564 | 582..19 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..655 | 582..19 | 2820 | 100 | Minus |
RpL18-RC | 694 | CG8615-RC | 30..593 | 582..19 | 2820 | 100 | Minus |
RpL18-RA | 724 | CG8615-RA | 60..623 | 582..19 | 2820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240304..7240779 | 19..494 | 2380 | 100 | Plus |
3L | 28110227 | 3L | 7240855..7240942 | 493..580 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:37:37 has no hits.
BO13608.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:07:59 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-PA | 1..567 | 15..582 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:32 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8615-PA | 1..567 | 15..582 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:08 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..632 | 8..590 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:48 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..632 | 8..590 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:48 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240295..7240777 | 8..492 | 98 | <- | Plus |
3L | 7240855..7240951 | 493..591 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:08 Download gff for
BO13608.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233395..7233877 | 8..492 | 98 | <- | Plus |
arm_3L | 7233955..7234051 | 493..591 | 94 | | Plus |
BO13608.5prime Sequence
596 bp (595 high quality bases) assembled on 2006-05-08
> BO13608.5prime
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGGCAAGCTTTCTAGACC
BO13608.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8615-PA | 567 | RpL18-RA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..655 | 17..580 | 2820 | 100 | Plus |
RpL18-RC | 694 | CG8615-RC | 30..593 | 17..580 | 2820 | 100 | Plus |
RpL18-RA | 724 | CG8615-RA | 60..623 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240304..7240779 | 580..105 | 2380 | 100 | Minus |
3L | 28110227 | 3L | 7240855..7240942 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 02:13:53 has no hits.
BO13608.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:00 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-PA | 1..567 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:33 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8615-PA | 1..567 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:54 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..632 | 9..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:42:57 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 52..632 | 9..591 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:42:57 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240295..7240777 | 107..591 | 98 | <- | Minus |
3L | 7240855..7240951 | 8..106 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:54 Download gff for
BO13608.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233395..7233877 | 107..591 | 98 | <- | Minus |
arm_3L | 7233955..7234051 | 8..106 | 94 | | Minus |
BO13608.complete Sequence
598 bp assembled on 2006-10-11
GenBank Submission: FJ632855
> BO13608.complete
GAAGTTATCAGTCGACATGGGTATTGATATCAACCACAAGTACGATCGCA
AGGTTCGCAGAACCGAGCCCAAATCCCAGGATGTGTACCTGCGCCTGCTG
GTCAAGCTGTACCGCTTCCTTCAGCGCCGCACCAACAAGAAGTTCAACCG
CATCATCCTGAAGCGTTTGTTCATGAGCAAGATCAACAGGCCGCCGCTAT
CGCTTCAGCGCATCGCTCGCTTCTTCAAGGCCGCCAACCAGCCGGAGTCT
ACCATCGTGGTCGTCGGCACCGTCACCGACGATGCCCGCCTCCTGGTGGT
GCCCAAGCTCACCGTGTGCGCCCTGCACGTCACGCAGACCGCCAGGGAGC
GCATCCTGAAGGCCGGCGGTGAGGTCCTGACCTTCGATCAACTGGCTCTC
CGATCGCCCACCGGCAAGAACACGCTGCTGCTGCAGGGCAGGCGTACCGC
CCGCACCGCCTGCAAGCACTTCGGCAAGGCTCCCGGTGTGCCCCACTCGC
ACACCCGCCCCTATGTCCGCTCTAAGGGACGCAAGTTCGAGCGTGCTCGT
GGTCGTCGCTCCAGCTGCGGCTACAAGAAGGCAAGCTTTCTAGACCAT
BO13608.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:52:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 567 | CG8615-PB | 1..564 | 17..580 | 2820 | 100 | Plus |
RpL18-RC | 567 | CG8615-PC | 1..564 | 17..580 | 2820 | 100 | Plus |
RpL18-RA | 567 | CG8615-PA | 1..564 | 17..580 | 2820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:52:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-RB | 756 | CG8615-RB | 92..655 | 17..580 | 2820 | 100 | Plus |
RpL18-RC | 694 | CG8615-RC | 30..593 | 17..580 | 2820 | 100 | Plus |
RpL18-RA | 724 | CG8615-RA | 60..623 | 17..580 | 2820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:52:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 7240304..7240779 | 580..105 | 2380 | 100 | Minus |
3L | 28110227 | 3L | 7240855..7240942 | 106..19 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:52:10 has no hits.
BO13608.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:23 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 1..567 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:35 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 50..630 | 9..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:33:09 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 60..623 | 17..582 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:23 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 50..630 | 9..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:32 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL18-RA | 60..623 | 17..582 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:32 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 7240302..7240777 | 107..582 | 99 | <- | Minus |
3L | 7240855..7240943 | 17..106 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:33:09 Download gff for
BO13608.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 7233402..7233877 | 107..582 | 99 | <- | Minus |
arm_3L | 7233955..7234043 | 17..106 | 98 | | Minus |
BO13608.pep Sequence
Translation from 16 to 598
> BO13608.pep
MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKR
LFMSKINRPPLSLQRIARFFKAANQPESTIVVVGTVTDDARLLVVPKLTV
CALHVTQTARERILKAGGEVLTFDQLALRSPTGKNTLLLQGRRTARTACK
HFGKAPGVPHSHTRPYVRSKGRKFERARGRRSSCGYKKASFLDH
BO13608.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:00:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL18-PB | 188 | CG8615-PB | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PC | 188 | CG8615-PC | 1..188 | 1..188 | 963 | 100 | Plus |
RpL18-PA | 188 | CG8615-PA | 1..188 | 1..188 | 963 | 100 | Plus |