Clone Sequence Records
BO13610.5prime Sequence
350 bp (349 high quality bases) assembled on 2006-05-08
> BO13610.5prime
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCGCAAGCTTTCTAGACC
BO13610.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12763-PA | 321 | Dpt-RA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpt-RA | 496 | CG12763-RA | 45..362 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18865809..18866126 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:49:49 has no hits.
BO13610.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:05 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-PA | 1..321 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:40 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12763-PA | 1..321 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:32 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:34 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 14..342 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:34 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18865806..18866133 | 14..342 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:32 Download gff for
BO13610.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14753311..14753638 | 14..342 | 99 | | Plus |
BO13610.3prime Sequence
350 bp (349 high quality bases) assembled on 2006-05-08
> BO13610.3prime
ATGGTCTAGAAAGCTTGCGAAATTCGGAAATCTGTAGGTGTAGGTGCTTC
CCACTTTCCAGCTCGGTTCTGAGTTGCCATATGGTCCTCCCAAGTGCTGT
CCATATCCTCCATTCAGTCCAATCTCGTGGCGTCCATTGTCGCTGGTCCA
CACCTTCTGGTGACCCTGGACTGCAAAGCCAAAACCATCGCCGCTCTGGC
CACCGCCGCCTCCCTGAAGATTGAGTGGGTACTGCGGTGGTGGAGTGGGC
TTCATGGTCATGTCGTCGGGCATCGGATAAGCCAAAGTAGAAGCGATTGC
GCAGCAAAGTAAGGCGACGGCAATGGTGAACTGCATGTCGACTGATAACT
BO13610.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12763-PA | 321 | Dpt-RA | 1..318 | 336..19 | 1590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpt-RA | 496 | CG12763-RA | 45..362 | 336..19 | 1590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18865809..18866126 | 336..19 | 1590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:25:28 has no hits.
BO13610.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:04 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-PA | 1..321 | 15..336 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:38 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12763-PA | 1..321 | 15..336 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:50 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 11..339 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:50 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 11..339 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:50 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18865806..18866133 | 11..339 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:50 Download gff for
BO13610.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14753311..14753638 | 11..339 | 99 | | Minus |
BO13610.complete Sequence
352 bp assembled on 2007-06-22
GenBank Submission: FJ632856
> BO13610.complete
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCGCAAGCTTTCTAGACC
AT
BO13610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpt-RA | 321 | CG12763-PA | 1..318 | 17..334 | 1590 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpt-RA | 496 | CG12763-RA | 45..362 | 17..334 | 1590 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18865809..18866126 | 17..334 | 1590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:51:22 has no hits.
BO13610.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:58 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 1..321 | 17..338 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:37 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:51 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 45..362 | 17..336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:58 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 42..369 | 14..342 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:16 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dpt-RA | 45..362 | 17..336 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:16 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18865809..18866126 | 17..336 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:51 Download gff for
BO13610.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14753314..14753631 | 17..336 | 99 | | Plus |
BO13610.pep Sequence
Translation from 16 to 352
> BO13610.pep
MQFTIAVALLCCAIASTLAYPMPDDMTMKPTPPPQYPLNLQGGGGGQSGD
GFGFAVQGHQKVWTSDNGRHEIGLNGGYGQHLGGPYGNSEPSWKVGSTYT
YRFPNFASFLDH
BO13610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dpt-PA | 106 | CG12763-PA | 1..106 | 1..106 | 597 | 100 | Plus |
DptB-PA | 120 | CG10794-PA | 1..120 | 1..103 | 240 | 41.7 | Plus |