Clone BO13610 Report

Search the DGRC for BO13610

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptDpt-RA
Protein status:BO13610.pep:
Sequenced Size:352

Clone Sequence Records

BO13610.5prime Sequence

350 bp (349 high quality bases) assembled on 2006-05-08

> BO13610.5prime
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCGCAAGCTTTCTAGACC

BO13610.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12763-PA 321 Dpt-RA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dpt-RA 496 CG12763-RA 45..362 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18865809..18866126 17..334 1590 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:49:49 has no hits.

BO13610.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:05 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-PA 1..321 17..338 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:40 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12763-PA 1..321 17..338 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:32 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 14..342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:34 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 14..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:34 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18865806..18866133 14..342 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:32 Download gff for BO13610.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14753311..14753638 14..342 99   Plus

BO13610.3prime Sequence

350 bp (349 high quality bases) assembled on 2006-05-08

> BO13610.3prime
ATGGTCTAGAAAGCTTGCGAAATTCGGAAATCTGTAGGTGTAGGTGCTTC
CCACTTTCCAGCTCGGTTCTGAGTTGCCATATGGTCCTCCCAAGTGCTGT
CCATATCCTCCATTCAGTCCAATCTCGTGGCGTCCATTGTCGCTGGTCCA
CACCTTCTGGTGACCCTGGACTGCAAAGCCAAAACCATCGCCGCTCTGGC
CACCGCCGCCTCCCTGAAGATTGAGTGGGTACTGCGGTGGTGGAGTGGGC
TTCATGGTCATGTCGTCGGGCATCGGATAAGCCAAAGTAGAAGCGATTGC
GCAGCAAAGTAAGGCGACGGCAATGGTGAACTGCATGTCGACTGATAACT

BO13610.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG12763-PA 321 Dpt-RA 1..318 336..19 1590 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:25:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dpt-RA 496 CG12763-RA 45..362 336..19 1590 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18865809..18866126 336..19 1590 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:25:28 has no hits.

BO13610.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:04 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-PA 1..321 15..336 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:38 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12763-PA 1..321 15..336 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:50 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 11..339 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:08:50 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 11..339 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:08:50 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18865806..18866133 11..339 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:50 Download gff for BO13610.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14753311..14753638 11..339 99   Minus

BO13610.complete Sequence

352 bp assembled on 2007-06-22

GenBank Submission: FJ632856

> BO13610.complete
GAAGTTATCAGTCGACATGCAGTTCACCATTGCCGTCGCCTTACTTTGCT
GCGCAATCGCTTCTACTTTGGCTTATCCGATGCCCGACGACATGACCATG
AAGCCCACTCCACCACCGCAGTACCCACTCAATCTTCAGGGAGGCGGCGG
TGGCCAGAGCGGCGATGGTTTTGGCTTTGCAGTCCAGGGTCACCAGAAGG
TGTGGACCAGCGACAATGGACGCCACGAGATTGGACTGAATGGAGGATAT
GGACAGCACTTGGGAGGACCATATGGCAACTCAGAACCGAGCTGGAAAGT
GGGAAGCACCTACACCTACAGATTTCCGAATTTCGCAAGCTTTCTAGACC
AT

BO13610.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dpt-RA 321 CG12763-PA 1..318 17..334 1590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dpt-RA 496 CG12763-RA 45..362 17..334 1590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18865809..18866126 17..334 1590 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:51:22 has no hits.

BO13610.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:53:58 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 1..321 17..338 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:06:37 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 14..342 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:51 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 45..362 17..336 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:53:58 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 42..369 14..342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:16 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
Dpt-RA 45..362 17..336 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:16 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18865809..18866126 17..336 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:51 Download gff for BO13610.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14753314..14753631 17..336 99   Plus

BO13610.pep Sequence

Translation from 16 to 352

> BO13610.pep
MQFTIAVALLCCAIASTLAYPMPDDMTMKPTPPPQYPLNLQGGGGGQSGD
GFGFAVQGHQKVWTSDNGRHEIGLNGGYGQHLGGPYGNSEPSWKVGSTYT
YRFPNFASFLDH

BO13610.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:27:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dpt-PA 106 CG12763-PA 1..106 1..106 597 100 Plus
DptB-PA 120 CG10794-PA 1..120 1..103 240 41.7 Plus