Clone BO13612 Report

Search the DGRC for BO13612

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptCG14980-RB
Protein status:BO13612.pep: validated full length
Sequenced Size:1489

Clone Sequence Records

BO13612.3prime Sequence

885 bp (758 high quality bases) assembled on 2006-05-08

> BO13612.3prime
ATGGTCTAGAAAGCTTGCTTTGTCAAAAAATACATCATCTGTGAGCTCTT
GCTCGAAAATGCGCCTCGCTTCCTGGGTGACGTCCAGCAAGGTGGCCTTG
CTATTGCACAGGATCACATAGTACTGCCTGTAGTTACAGCGCCGCTTCAC
AATCCAATAGTCATTGGTGGTCTTGACCTGAACTTCCTCGGCAGGAGCAC
TCTCCATTTCCGCCTTGCCACTGCCATTGGCCAAGTCCGCAATGATACTA
AGCACATTGCGGGGCAGCCCTTGGGGCAGGTGCCTCTGAAAGTTCGTGTG
GTGCTGCAGGCTTTGTTCGTTAATGAACAAGTACTTCGGCGCCGTTTCGC
TGTTCCCGCTGGAGTTGTCCTGGCCTGCAGCACCCACCGCCTCCTTTGTC
AACTCGCTGGATATGTCCCGGGCCAACGAAGTCAGTTGGGGAGCCATGTA
GGCATGGAGATCGTCGTAGAGATCTTGTTTCGGCGCAACCTGGTCAGCAT
TCAGAAACAGACACAGAGTTATGTGCAAAGCGCGGTAGATGAGCAAGTAG
TAGGGTTTGGCCTCCTTGTCCAGTGTCACATAGACCTTCATTGGATGATC
TTCCTCATTCACAGCGTCATGTTCATCTCCTGCGACCTTCTGACGACTTC
TTACGAATCCGCCCACCTGGCATTCACTTATGCTTCGCTTTAGTGAAGGA
GAAACTGCAATGGTGGAACTGCTGGCCTCGACTTTCAGCACGTGTTGCAC
GACATACGAGTGCACGCAGTGCAGATCCTCCGGGCTAAGTTTTCCGCCAC
AAAGGACCTGCTCCTGGTAGAGCATTATGCTCTCCTTGATGTCGGGGAAG
GTCTCGCACAGGGTGCCAAAGTTTTGGGCCCGCAA

BO13612.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14980-PB 1458 CG14980-RB 589..1455 885..19 4335 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:25:55
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 647..1513 885..19 4335 100 Minus
CG14977-RB 543 CG14977-RB 507..543 19..55 185 100 Plus
CG14977-RA 543 CG14977-RA 507..543 19..55 185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3897462..3897941 19..498 2400 100 Plus
3L 28110227 3L 3898004..3898391 498..885 1940 100 Plus
Blast to na_te.dros performed 2015-02-02 19:25:51
Subject Length Description Subject Range Query Range Score Percent Strand
TAHRE 10463 TAHRE OSV 10463bp 6132..6160 41..13 109 86.2 Minus

BO13612.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:08 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 591..1458 15..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:44 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 591..1458 15..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:50 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 649..1518 14..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:43 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 649..1518 14..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:43 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 3897457..3897940 14..497 99 <- Plus
3L 3898004..3898389 498..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:50 Download gff for BO13612.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3897457..3897940 14..497 99 <- Plus
arm_3L 3898004..3898389 498..883 100   Plus

BO13612.5prime Sequence

846 bp (752 high quality bases) assembled on 2006-05-08

> BO13612.5prime
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCG

BO13612.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG14980-PB 1458 CG14980-RB 1..830 17..846 4150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 59..888 17..846 4150 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3898150..3898798 846..198 3245 100 Minus
3L 28110227 3L 3898862..3898961 198..99 500 100 Minus
3L 28110227 3L 3899014..3899098 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:22:21 has no hits.

BO13612.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:09 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:46 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14980-PB 1..830 17..846 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:40 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 56..888 14..846 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:18 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 56..888 14..846 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:18 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 3898150..3898797 199..846 100 <- Minus
3L 3898862..3898959 101..198 100 <- Minus
3L 3899015..3899101 14..100 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:40 Download gff for BO13612.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3898150..3898797 199..846 100 <- Minus
arm_3L 3898862..3898959 101..198 100 <- Minus
arm_3L 3899015..3899101 14..100 98   Minus

BO13612.complete Sequence

1489 bp assembled on 2006-10-11

GenBank Submission: FJ632857

> BO13612.complete
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAG
AAGGTCGCAGGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAAT
GAAGGTCTATGTGACACTGGACAAGGAGGCCAAACCCTACTACTTGCTCA
TCTACCGCGCTTTGCACATAACTCTGTGTCTGTTTCTGAATGCTGACCAG
GTTGCGCCGAAACAAGATCTCTACGACGATCTCCATGCCTACATGGCTCC
CCAACTGACTTCGTTGGCCCGGGACATATCCAGCGAGTTGACAAAGGAGG
CGGTGGGTGCTGCAGGCCAGGACAACTCCAGCGGGAACAGCGAAACGGCG
CCGAAGTACTTGTTCATTAACGAACAAAGCCTGCAGCACCACACGAACTT
TCAGAGGCACCTGCCCCAAGGGCTGCCCCGCAATGTGCTTAGTATCATTG
CGGACTTGGCCAATGGCAGTGGCAAGGCGGAAATGGAGAGTGCTCCTGCC
GAGGAAGTTCAGGTCAAGACCACCAATGACTATTGGATTGTGAAGCGGCG
CTGTAACTACAGGCAGTACTATGTGATCCTGTGCAATAGCAAGGCCACCT
TGCTGGACGTCACCCAGGAAGCGAGGCGCATTTTCGAGCAAGAGCTCACA
GATGATGTATTTTTTGACAAAGCAAGCTTTCTAGACCAT

BO13612.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1458 CG14980-PB 1..1455 17..1471 7275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:54
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-RB 1531 CG14980-RB 59..1513 17..1471 7275 100 Plus
CG14977-RB 543 CG14977-RB 507..543 1471..1435 185 100 Minus
CG14977-RA 543 CG14977-RA 507..543 1471..1435 185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 3898004..3898798 992..198 3975 100 Minus
3L 28110227 3L 3897462..3897941 1471..992 2400 100 Minus
3L 28110227 3L 3898862..3898961 198..99 500 100 Minus
3L 28110227 3L 3899014..3899098 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:34:52 has no hits.

BO13612.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:58 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 1..1458 17..1475 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:04 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
CG14980-RB 56..1518 14..1476 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:50 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 59..1513 17..1473 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:22 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
Ccz1-RB 59..1513 17..1473 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:22 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
3L 3898004..3898797 199..992 100 <- Minus
3L 3897460..3897940 993..1473 99 <- Minus
3L 3898862..3898959 101..198 100 <- Minus
3L 3899015..3899098 17..100 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:50 Download gff for BO13612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 3897460..3897940 993..1473 99 <- Minus
arm_3L 3898004..3898797 199..992 100 <- Minus
arm_3L 3898862..3898959 101..198 100 <- Minus
arm_3L 3899015..3899098 17..100 100   Minus

BO13612.pep Sequence

Translation from 16 to 1489

> BO13612.pep
MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDV
GLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEV
RLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPD
KRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQ
NFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEA
SSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVT
LDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSL
ARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLP
QGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQ
YYVILCNSKATLLDVTQEARRIFEQELTDDVFFDKASFLDH

BO13612.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ccz1-PB 485 CG14980-PB 1..485 1..485 2536 100 Plus