Clone Sequence Records
BO13612.3prime Sequence
885 bp (758 high quality bases) assembled on 2006-05-08
> BO13612.3prime
ATGGTCTAGAAAGCTTGCTTTGTCAAAAAATACATCATCTGTGAGCTCTT
GCTCGAAAATGCGCCTCGCTTCCTGGGTGACGTCCAGCAAGGTGGCCTTG
CTATTGCACAGGATCACATAGTACTGCCTGTAGTTACAGCGCCGCTTCAC
AATCCAATAGTCATTGGTGGTCTTGACCTGAACTTCCTCGGCAGGAGCAC
TCTCCATTTCCGCCTTGCCACTGCCATTGGCCAAGTCCGCAATGATACTA
AGCACATTGCGGGGCAGCCCTTGGGGCAGGTGCCTCTGAAAGTTCGTGTG
GTGCTGCAGGCTTTGTTCGTTAATGAACAAGTACTTCGGCGCCGTTTCGC
TGTTCCCGCTGGAGTTGTCCTGGCCTGCAGCACCCACCGCCTCCTTTGTC
AACTCGCTGGATATGTCCCGGGCCAACGAAGTCAGTTGGGGAGCCATGTA
GGCATGGAGATCGTCGTAGAGATCTTGTTTCGGCGCAACCTGGTCAGCAT
TCAGAAACAGACACAGAGTTATGTGCAAAGCGCGGTAGATGAGCAAGTAG
TAGGGTTTGGCCTCCTTGTCCAGTGTCACATAGACCTTCATTGGATGATC
TTCCTCATTCACAGCGTCATGTTCATCTCCTGCGACCTTCTGACGACTTC
TTACGAATCCGCCCACCTGGCATTCACTTATGCTTCGCTTTAGTGAAGGA
GAAACTGCAATGGTGGAACTGCTGGCCTCGACTTTCAGCACGTGTTGCAC
GACATACGAGTGCACGCAGTGCAGATCCTCCGGGCTAAGTTTTCCGCCAC
AAAGGACCTGCTCCTGGTAGAGCATTATGCTCTCCTTGATGTCGGGGAAG
GTCTCGCACAGGGTGCCAAAGTTTTGGGCCCGCAA
BO13612.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14980-PB | 1458 | CG14980-RB | 589..1455 | 885..19 | 4335 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:25:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 647..1513 | 885..19 | 4335 | 100 | Minus |
CG14977-RB | 543 | CG14977-RB | 507..543 | 19..55 | 185 | 100 | Plus |
CG14977-RA | 543 | CG14977-RA | 507..543 | 19..55 | 185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3897462..3897941 | 19..498 | 2400 | 100 | Plus |
3L | 28110227 | 3L | 3898004..3898391 | 498..885 | 1940 | 100 | Plus |
Blast to na_te.dros performed 2015-02-02 19:25:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TAHRE | 10463 | TAHRE OSV 10463bp | 6132..6160 | 41..13 | 109 | 86.2 | Minus |
BO13612.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:08 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 591..1458 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:44 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 591..1458 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:50 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 649..1518 | 14..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:43 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 649..1518 | 14..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:43 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3897457..3897940 | 14..497 | 99 | <- | Plus |
3L | 3898004..3898389 | 498..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:50 Download gff for
BO13612.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3897457..3897940 | 14..497 | 99 | <- | Plus |
arm_3L | 3898004..3898389 | 498..883 | 100 | | Plus |
BO13612.5prime Sequence
846 bp (752 high quality bases) assembled on 2006-05-08
> BO13612.5prime
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCG
BO13612.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14980-PB | 1458 | CG14980-RB | 1..830 | 17..846 | 4150 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 59..888 | 17..846 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3898150..3898798 | 846..198 | 3245 | 100 | Minus |
3L | 28110227 | 3L | 3898862..3898961 | 198..99 | 500 | 100 | Minus |
3L | 28110227 | 3L | 3899014..3899098 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:22:21 has no hits.
BO13612.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:09 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:46 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-PB | 1..830 | 17..846 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:02:40 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 56..888 | 14..846 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:09:18 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 56..888 | 14..846 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:09:18 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3898150..3898797 | 199..846 | 100 | <- | Minus |
3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
3L | 3899015..3899101 | 14..100 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:02:40 Download gff for
BO13612.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3898150..3898797 | 199..846 | 100 | <- | Minus |
arm_3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
arm_3L | 3899015..3899101 | 14..100 | 98 | | Minus |
BO13612.complete Sequence
1489 bp assembled on 2006-10-11
GenBank Submission: FJ632857
> BO13612.complete
GAAGTTATCAGTCGACATGGCTAAATTATTGCAACGCGTAGAAATTACGT
TACGCAGCTTTTACATTTTTAACTCGACTTTTGGCCAAGTTGAAGGCGAG
GAACACAAGAAGGTTTTGTTTTACCATCCAAATGACATTGAATTAAATAC
GAAAATCAAAGATGTGGGACTAAGTGAGGCCATCATAAGGTTCACTGGAA
CTTTTACATCTGAAGATGATTGCCAGGCCTTGCATACCCAGAAAACCACA
CAACTCTTCTACCAACCCGAGCCAGGGTATTGGTTAGTACTGGTCCTGAA
TGTTCCCAAGGAGGTGCGCTTAAAGGAGGGCGTGGAGGTGGCCGATTATC
GGGGTGCCGAGATCTCCGACAGGATTTATAGAGCAATACTTAGACAATGC
TATCAAATGTTTCGCTTTCAAAACGGATGTTTCTCCTCCTGCGGAAGTGA
AGAACCTAATCCGGATAAGCGTAGGGAACTGCTCTGCCAGAAGCTACTCC
AGTTCTATGATCAGCATCTGACCAACCTGAGGGATCCCGCGCAATGTGAT
ATCATCGATATGCTGCATTCCATTCAGTATCTGCCATTGGATAAAACGCT
CTTCTTGCGGGCCCAAAACTTTGGCACCCTGTGCGAGACCTTCCCCGACA
TCAAGGAGAGCATAATGCTCTACCAGGAGCAGGTCCTTTGTGGCGGAAAA
CTTAGCCCGGAGGATCTGCACTGCGTGCACTCGTATGTCGTGCAACACGT
GCTGAAAGTCGAGGCCAGCAGTTCCACCATTGCAGTTTCTCCTTCACTAA
AGCGAAGCATAAGTGAATGCCAGGTGGGCGGATTCGTAAGAAGTCGTCAG
AAGGTCGCAGGAGATGAACATGACGCTGTGAATGAGGAAGATCATCCAAT
GAAGGTCTATGTGACACTGGACAAGGAGGCCAAACCCTACTACTTGCTCA
TCTACCGCGCTTTGCACATAACTCTGTGTCTGTTTCTGAATGCTGACCAG
GTTGCGCCGAAACAAGATCTCTACGACGATCTCCATGCCTACATGGCTCC
CCAACTGACTTCGTTGGCCCGGGACATATCCAGCGAGTTGACAAAGGAGG
CGGTGGGTGCTGCAGGCCAGGACAACTCCAGCGGGAACAGCGAAACGGCG
CCGAAGTACTTGTTCATTAACGAACAAAGCCTGCAGCACCACACGAACTT
TCAGAGGCACCTGCCCCAAGGGCTGCCCCGCAATGTGCTTAGTATCATTG
CGGACTTGGCCAATGGCAGTGGCAAGGCGGAAATGGAGAGTGCTCCTGCC
GAGGAAGTTCAGGTCAAGACCACCAATGACTATTGGATTGTGAAGCGGCG
CTGTAACTACAGGCAGTACTATGTGATCCTGTGCAATAGCAAGGCCACCT
TGCTGGACGTCACCCAGGAAGCGAGGCGCATTTTCGAGCAAGAGCTCACA
GATGATGTATTTTTTGACAAAGCAAGCTTTCTAGACCAT
BO13612.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1458 | CG14980-PB | 1..1455 | 17..1471 | 7275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-RB | 1531 | CG14980-RB | 59..1513 | 17..1471 | 7275 | 100 | Plus |
CG14977-RB | 543 | CG14977-RB | 507..543 | 1471..1435 | 185 | 100 | Minus |
CG14977-RA | 543 | CG14977-RA | 507..543 | 1471..1435 | 185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 3898004..3898798 | 992..198 | 3975 | 100 | Minus |
3L | 28110227 | 3L | 3897462..3897941 | 1471..992 | 2400 | 100 | Minus |
3L | 28110227 | 3L | 3898862..3898961 | 198..99 | 500 | 100 | Minus |
3L | 28110227 | 3L | 3899014..3899098 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:34:52 has no hits.
BO13612.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:58 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-RB | 1..1458 | 17..1475 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:04 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14980-RB | 56..1518 | 14..1476 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:50 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 59..1513 | 17..1473 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:22 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccz1-RB | 59..1513 | 17..1473 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:22 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 3898004..3898797 | 199..992 | 100 | <- | Minus |
3L | 3897460..3897940 | 993..1473 | 99 | <- | Minus |
3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
3L | 3899015..3899098 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:50 Download gff for
BO13612.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 3897460..3897940 | 993..1473 | 99 | <- | Minus |
arm_3L | 3898004..3898797 | 199..992 | 100 | <- | Minus |
arm_3L | 3898862..3898959 | 101..198 | 100 | <- | Minus |
arm_3L | 3899015..3899098 | 17..100 | 100 | | Minus |
BO13612.pep Sequence
Translation from 16 to 1489
> BO13612.pep
MAKLLQRVEITLRSFYIFNSTFGQVEGEEHKKVLFYHPNDIELNTKIKDV
GLSEAIIRFTGTFTSEDDCQALHTQKTTQLFYQPEPGYWLVLVLNVPKEV
RLKEGVEVADYRGAEISDRIYRAILRQCYQMFRFQNGCFSSCGSEEPNPD
KRRELLCQKLLQFYDQHLTNLRDPAQCDIIDMLHSIQYLPLDKTLFLRAQ
NFGTLCETFPDIKESIMLYQEQVLCGGKLSPEDLHCVHSYVVQHVLKVEA
SSSTIAVSPSLKRSISECQVGGFVRSRQKVAGDEHDAVNEEDHPMKVYVT
LDKEAKPYYLLIYRALHITLCLFLNADQVAPKQDLYDDLHAYMAPQLTSL
ARDISSELTKEAVGAAGQDNSSGNSETAPKYLFINEQSLQHHTNFQRHLP
QGLPRNVLSIIADLANGSGKAEMESAPAEEVQVKTTNDYWIVKRRCNYRQ
YYVILCNSKATLLDVTQEARRIFEQELTDDVFFDKASFLDH
BO13612.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccz1-PB | 485 | CG14980-PB | 1..485 | 1..485 | 2536 | 100 | Plus |