Clone BO13613 Report

Search the DGRC for BO13613

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG17778-RA
Protein status:BO13613.pep: validated full length
Sequenced Size:415

Clone Sequence Records

BO13613.3prime Sequence

413 bp (412 high quality bases) assembled on 2006-05-08

> BO13613.3prime
ATGGTCTAGAAAGCTTGCTTCATGAATACCAACCCCTGCTCCATCGAGCC
CTTTCTCGGGCTTTTTGCGACCCTTCTGGGAGCTAGCTATCCGCTGTTTT
AGAGTGTGAAAAGTCTGCTGCATGCTGCGCATTTGGTACCGTATGGAGCT
GCTGACGTCACGCTGCAACTGCTGCACCTCGCGAATGTCCTTGCGCAGAT
TCTGGTACTCGTTGGTCACCTCGCTCATCGACTCGAGCAACTCGAGGACC
TCCATCTCGTCCATCTGCTCCATCGTCGTCTGTTCGAGGCTGCGCTCCAC
CGCGTGCAGTTTGTGGGCCATCGTGTACAGCTGCGATCCTGCATTGGCCA
CCGATTTTTCCAGAGCGCTGATGTCCTGGTAGCCCGGCGTGGCCTCCATG
TCGACTGATAACT

BO13613.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-PA 384 CG17778-RA 1..381 399..19 1905 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-RB 1344 CG17778-RB 396..776 399..19 1905 100 Minus
CG17778-RA 1119 CG17778-RA 171..551 399..19 1905 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 495468..495801 352..19 1670 100 Minus
X 23542271 X 495070..495120 399..349 255 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:13:24 has no hits.

BO13613.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:10 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-PA 1..384 15..399 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:47 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-PA 1..384 15..399 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:02 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 15..399 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:55 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 15..399 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:55 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
X 495070..495117 352..399 100 -> Minus
X 495469..495804 15..351 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:02 Download gff for BO13613.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 389103..389150 352..399 100 -> Minus
arm_X 389502..389837 15..351 99   Minus

BO13613.5prime Sequence

413 bp (412 high quality bases) assembled on 2006-05-08

> BO13613.5prime
GAAGTTATCAGTCGACATGGAGGCCACGCCGGGCTACCAGGACATCAGCG
CTCTGGAAAAATCGGTGGCCAATGCAGGATCGCAGCTGTACACGATGGCC
CACAAACTGCACGCGGTGGAGCGCAGCCTCGAACAGACGACGATGGAGCA
GATGGACGAGATGGAGGTCCTCGAGTTGCTCGAGTCGATGAGCGAGGTGA
CCAACGAGTACCAGAATCTGCGCAAGGACATTCGCGAGGTGCAGCAGTTG
CAGCGTGACGTCAGCAGCTCCATACGGTACCAAATGCGCAGCATGCAGCA
GACTTTTCACACTCTAAAACAGCGGATAGCTAGCTCCCAGAAGGGTCGCA
AAAAGCCCGAGAAAGGGCTCGATGGAGCAGGGGTTGGTATTCATGAAGCA
AGCTTTCTAGACC

BO13613.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-PA 384 CG17778-RA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-RB 1344 CG17778-RB 396..776 17..397 1905 100 Plus
CG17778-RA 1119 CG17778-RA 171..551 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 495468..495801 64..397 1670 100 Plus
X 23542271 X 495070..495120 17..67 255 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:07:32 has no hits.

BO13613.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:11 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-PA 1..384 17..401 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:49 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-PA 1..384 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:54 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 17..401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:30 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 17..401 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:30 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
X 495070..495117 17..64 100 -> Plus
X 495469..495804 65..401 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:54 Download gff for BO13613.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 389103..389150 17..64 100 -> Plus
arm_X 389502..389837 65..401 99   Plus

BO13613.complete Sequence

415 bp assembled on 2006-10-11

GenBank Submission: FJ632858

> BO13613.complete
GAAGTTATCAGTCGACATGGAGGCCACGCCGGGCTACCAGGACATCAGCG
CTCTGGAAAAATCGGTGGCCAATGCAGGATCGCAGCTGTACACGATGGCC
CACAAACTGCACGCGGTGGAGCGCAGCCTCGAACAGACGACGATGGAGCA
GATGGACGAGATGGAGGTCCTCGAGTTGCTCGAGTCGATGAGCGAGGTGA
CCAACGAGTACCAGAATCTGCGCAAGGACATTCGCGAGGTGCAGCAGTTG
CAGCGTGACGTCAGCAGCTCCATACGGTACCAAATGCGCAGCATGCAGCA
GACTTTTCACACTCTAAAACAGCGGATAGCTAGCTCCCAGAAGGGTCGCA
AAAAGCCCGAGAAAGGGCTCGATGGAGCAGGGGTTGGTATTCATGAAGCA
AGCTTTCTAGACCAT

BO13613.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-RB 384 CG17778-PB 1..381 17..397 1905 100 Plus
CG17778-RA 384 CG17778-PA 1..381 17..397 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-RB 1344 CG17778-RB 396..776 17..397 1905 100 Plus
CG17778-RA 1119 CG17778-RA 171..551 17..397 1905 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:10
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 495468..495801 64..397 1670 100 Plus
X 23542271 X 495070..495120 17..67 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:29:11 has no hits.

BO13613.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:37 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 1..384 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:38 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 17..401 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:13 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..551 17..399 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:37 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..554 17..401 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:05 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
CG17778-RA 171..551 17..399 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:05 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
X 495070..495117 17..64 100 -> Plus
X 495469..495801 65..399 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:13 Download gff for BO13613.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 389103..389150 17..64 100 -> Plus
arm_X 389502..389834 65..399 99   Plus

BO13613.pep Sequence

Translation from 16 to 415

> BO13613.pep
MEATPGYQDISALEKSVANAGSQLYTMAHKLHAVERSLEQTTMEQMDEME
VLELLESMSEVTNEYQNLRKDIREVQQLQRDVSSSIRYQMRSMQQTFHTL
KQRIASSQKGRKKPEKGLDGAGVGIHEASFLDH

BO13613.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG17778-PB 127 CG17778-PB 1..127 1..127 632 100 Plus
CG17778-PA 127 CG17778-PA 1..127 1..127 632 100 Plus