Clone Sequence Records
BO13613.3prime Sequence
413 bp (412 high quality bases) assembled on 2006-05-08
> BO13613.3prime
ATGGTCTAGAAAGCTTGCTTCATGAATACCAACCCCTGCTCCATCGAGCC
CTTTCTCGGGCTTTTTGCGACCCTTCTGGGAGCTAGCTATCCGCTGTTTT
AGAGTGTGAAAAGTCTGCTGCATGCTGCGCATTTGGTACCGTATGGAGCT
GCTGACGTCACGCTGCAACTGCTGCACCTCGCGAATGTCCTTGCGCAGAT
TCTGGTACTCGTTGGTCACCTCGCTCATCGACTCGAGCAACTCGAGGACC
TCCATCTCGTCCATCTGCTCCATCGTCGTCTGTTCGAGGCTGCGCTCCAC
CGCGTGCAGTTTGTGGGCCATCGTGTACAGCTGCGATCCTGCATTGGCCA
CCGATTTTTCCAGAGCGCTGATGTCCTGGTAGCCCGGCGTGGCCTCCATG
TCGACTGATAACT
BO13613.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-PA | 384 | CG17778-RA | 1..381 | 399..19 | 1905 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:13:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-RB | 1344 | CG17778-RB | 396..776 | 399..19 | 1905 | 100 | Minus |
CG17778-RA | 1119 | CG17778-RA | 171..551 | 399..19 | 1905 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:13:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 495468..495801 | 352..19 | 1670 | 100 | Minus |
X | 23542271 | X | 495070..495120 | 399..349 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:13:24 has no hits.
BO13613.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:10 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-PA | 1..384 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:47 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-PA | 1..384 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:02 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 15..399 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:55 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 15..399 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:55 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 495070..495117 | 352..399 | 100 | -> | Minus |
X | 495469..495804 | 15..351 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:02 Download gff for
BO13613.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 389103..389150 | 352..399 | 100 | -> | Minus |
arm_X | 389502..389837 | 15..351 | 99 | | Minus |
BO13613.5prime Sequence
413 bp (412 high quality bases) assembled on 2006-05-08
> BO13613.5prime
GAAGTTATCAGTCGACATGGAGGCCACGCCGGGCTACCAGGACATCAGCG
CTCTGGAAAAATCGGTGGCCAATGCAGGATCGCAGCTGTACACGATGGCC
CACAAACTGCACGCGGTGGAGCGCAGCCTCGAACAGACGACGATGGAGCA
GATGGACGAGATGGAGGTCCTCGAGTTGCTCGAGTCGATGAGCGAGGTGA
CCAACGAGTACCAGAATCTGCGCAAGGACATTCGCGAGGTGCAGCAGTTG
CAGCGTGACGTCAGCAGCTCCATACGGTACCAAATGCGCAGCATGCAGCA
GACTTTTCACACTCTAAAACAGCGGATAGCTAGCTCCCAGAAGGGTCGCA
AAAAGCCCGAGAAAGGGCTCGATGGAGCAGGGGTTGGTATTCATGAAGCA
AGCTTTCTAGACC
BO13613.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-PA | 384 | CG17778-RA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-RB | 1344 | CG17778-RB | 396..776 | 17..397 | 1905 | 100 | Plus |
CG17778-RA | 1119 | CG17778-RA | 171..551 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 495468..495801 | 64..397 | 1670 | 100 | Plus |
X | 23542271 | X | 495070..495120 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:07:32 has no hits.
BO13613.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:11 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-PA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:49 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-PA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:54 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:30 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 17..401 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:30 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 495070..495117 | 17..64 | 100 | -> | Plus |
X | 495469..495804 | 65..401 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:54 Download gff for
BO13613.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 389103..389150 | 17..64 | 100 | -> | Plus |
arm_X | 389502..389837 | 65..401 | 99 | | Plus |
BO13613.complete Sequence
415 bp assembled on 2006-10-11
GenBank Submission: FJ632858
> BO13613.complete
GAAGTTATCAGTCGACATGGAGGCCACGCCGGGCTACCAGGACATCAGCG
CTCTGGAAAAATCGGTGGCCAATGCAGGATCGCAGCTGTACACGATGGCC
CACAAACTGCACGCGGTGGAGCGCAGCCTCGAACAGACGACGATGGAGCA
GATGGACGAGATGGAGGTCCTCGAGTTGCTCGAGTCGATGAGCGAGGTGA
CCAACGAGTACCAGAATCTGCGCAAGGACATTCGCGAGGTGCAGCAGTTG
CAGCGTGACGTCAGCAGCTCCATACGGTACCAAATGCGCAGCATGCAGCA
GACTTTTCACACTCTAAAACAGCGGATAGCTAGCTCCCAGAAGGGTCGCA
AAAAGCCCGAGAAAGGGCTCGATGGAGCAGGGGTTGGTATTCATGAAGCA
AGCTTTCTAGACCAT
BO13613.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-RB | 384 | CG17778-PB | 1..381 | 17..397 | 1905 | 100 | Plus |
CG17778-RA | 384 | CG17778-PA | 1..381 | 17..397 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-RB | 1344 | CG17778-RB | 396..776 | 17..397 | 1905 | 100 | Plus |
CG17778-RA | 1119 | CG17778-RA | 171..551 | 17..397 | 1905 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 495468..495801 | 64..397 | 1670 | 100 | Plus |
X | 23542271 | X | 495070..495120 | 17..67 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:29:11 has no hits.
BO13613.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:37 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 1..384 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:38 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:12:13 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..551 | 17..399 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:37 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..554 | 17..401 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:05 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17778-RA | 171..551 | 17..399 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:05 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 495070..495117 | 17..64 | 100 | -> | Plus |
X | 495469..495801 | 65..399 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:12:13 Download gff for
BO13613.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 389103..389150 | 17..64 | 100 | -> | Plus |
arm_X | 389502..389834 | 65..399 | 99 | | Plus |
BO13613.pep Sequence
Translation from 16 to 415
> BO13613.pep
MEATPGYQDISALEKSVANAGSQLYTMAHKLHAVERSLEQTTMEQMDEME
VLELLESMSEVTNEYQNLRKDIREVQQLQRDVSSSIRYQMRSMQQTFHTL
KQRIASSQKGRKKPEKGLDGAGVGIHEASFLDH
BO13613.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:20:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17778-PB | 127 | CG17778-PB | 1..127 | 1..127 | 632 | 100 | Plus |
CG17778-PA | 127 | CG17778-PA | 1..127 | 1..127 | 632 | 100 | Plus |