Clone Sequence Records
BO13614.3prime Sequence
846 bp (727 high quality bases) assembled on 2006-05-08
> BO13614.3prime
ATGGTCTAGAAAGCTTGCCTTTACATCCTTTAGAACCTGAGCATACGATG
GTGGGGGCTTAAAGTTGGTGACCTCCTTGTAGATCAATTCCTTCCATTTG
TCTACGGGCAAATCCATATCCTCGAAGCTGTGATCGTATGGTGGTGAGGT
CTGCTCGACGCTGGGCTCCGCATACTTCTCCAGATATGGATGGGAAAGAG
CCTCCTCGGCTGTGATCCGCTTTTCGGCATCTAGCTCCAACATCTTTTCC
AGCAAATCAATGGCCAGCGGATTGGCGTTCTTAAAAACATTTTTAAAACT
TCGTCCCTTCATAGGCGGAAGTGACTGGATGTAGGAACGTGCACTTTCCG
ATGAGATCTTCTTCAAAAATTCGGCGGGTGGCGTGCCCAACATCTCCATA
ATCAGGTTTAGCTGGTGAATATGGTCGGTGCCTGGGAAGAGGGTTCGTCT
GGTAATTAGTTCGGCCATGATGCAGCCCACCGACCAGATGTCCACTGTTT
GGTCGTAGTGCATCCAATTGAGCATTATTTCAGGTGCCCGGTACCAACGC
GTGGCCACATAGCCTGTCATCTCGTTCTCCGTTGGGCGGGCCAGCCCGAA
GTCTAGAATGCGCAGCTCGCAATCCTCGTTGACGGCAATGTTTGAGGGCT
TAAGATCACGGTGGATCACTCCGGCGCTGTGGATATACTTCAAGCCACGG
AGTATCTGGTAGACTAAAAACTGGACGTGGCCGTCGGACAAGTGCTGCAT
CCCGATGATGTTGTTCAGATCTGCGTCCATCAAGTGGGTAACCAAGTACA
CCTGTTGGAAGTTCTCCAGCGATCCATTACCGGGAAGTGGAATGGA
BO13614.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5475-PA | 1101 | Mpk2-RA | 276..1098 | 841..19 | 3990 | 99.3 | Minus |
CG5475-PB | 1101 | Mpk2-RB | 276..1098 | 841..19 | 3990 | 99.3 | Minus |
CG7393-PA | 1098 | p38b-RA | 562..650 | 552..464 | 220 | 89.8 | Minus |
CG7393-PA | 1098 | p38b-RA | 313..356 | 801..758 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:37:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38a-RC | 1474 | CG5475-RC | 463..1285 | 841..19 | 4040 | 99.4 | Minus |
p38a-RB | 1634 | CG5475-RB | 623..1445 | 841..19 | 4040 | 99.4 | Minus |
p38a-RA | 1450 | CG5475-RA | 439..1261 | 841..19 | 4040 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24150605..24151427 | 19..841 | 4040 | 99.4 | Plus |
2L | 23513712 | 2L | 13781291..13781994 | 822..119 | 925 | 75.4 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:37:13 has no hits.
BO13614.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:12 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-PB | 273..1101 | 16..845 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:50 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5475-PB | 273..1101 | 16..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:04 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RA | 436..1265 | 15..845 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:45 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38a-RA | 436..1265 | 15..845 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:45 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24150601..24151430 | 15..845 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:04 Download gff for
BO13614.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19976323..19977152 | 15..845 | 99 | | Plus |
BO13614.5prime Sequence
928 bp (767 high quality bases) assembled on 2006-05-08
> BO13614.5prime
GAAGTTATCAGTCGACATGTCAGTGTCCATTACAAAAAAGTTTTACAAGT
TGGATATAAATCGAACGGAATGGGAGATCCCGGATATATACCAGGATCTG
CAGCCCGTGGGATCGGGAGCTTACGGACAGGTGTCAAAGGCAGTTGTTCG
TGGCACCAATATGCATGTGGCCATTAAAAAGCTTGCCAGGCCTTTTCAAT
CAGCTGTCCATGCAAAGAGGACGTACCGGGAGCTTCGACTTTTAAAGCAT
ATGGATCATGAGAACGTAATCGGTCTGCTGGACATATTCCATCCACATCC
CGCTAATGGATCGCTGGAGAACTTCCAACAGGTGTACTTGGTTACCCACT
TGATGGACGCAGATCTGAACAACATCATACGGATGCAGCACTTGTCCGAC
GACCACGTCCAGTTTTTAGTCTACCAGATACTCCGTGGCTTGAAGTATAT
CCACAGCGCCGGAGTGATCCACCGTGATCTTAAGCCCTCAAACATTGCCG
TCAACGAGGATTGCGAGCTGCGCATTCTAGACTTCGGGCTGGCCCGCCCA
ACGGAGAACGAGATGACAGGCTATGTGGCCACGCGTTGGTACCGGGCACC
TGAAATAATGCTCAATTGGATGCACTACGACCAAACAGTGGACATCTGGT
CGGTGGGCTGCATCATGGCCGAACTAATTACCAGACGAACCCTCTTCCCA
GGCACCGACCATATTCACCAGCTAAACCTGATTATGGAGATGTTGGGCAC
GCCACCCGCCGAATTTTTGAAGAAGATCTCATCGGAAAGTGCACGTTCCT
ACATCCAGTCACTTCCGCCTATGAAGGGACGAATTTTAAAAATGTTTTTA
AAAAGCCAATCCGCTGGCCATTGATTTGCTGGAAAGATGTTGGAGCTAAA
TGCCGAAAAGCGGATCACACCCAAGGAG
BO13614.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5475-PA | 1101 | Mpk2-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 1..817 | 17..833 | 4085 | 100 | Plus |
CG7393-PA | 1098 | p38b-RA | 562..650 | 581..669 | 220 | 89.8 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 870..906 | 883..919 | 160 | 97.2 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 870..906 | 883..919 | 160 | 97.2 | Plus |
CG5475-PA | 1101 | Mpk2-RA | 841..871 | 855..885 | 155 | 100 | Plus |
CG5475-PB | 1101 | Mpk2-RB | 841..871 | 855..885 | 155 | 100 | Plus |
CG7393-PA | 1098 | p38b-RA | 313..362 | 332..381 | 150 | 92 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38a-RC | 1474 | CG5475-RC | 187..1102 | 16..928 | 4445 | 99.2 | Plus |
p38a-RB | 1634 | CG5475-RB | 347..1262 | 16..928 | 4445 | 99.2 | Plus |
p38a-RA | 1450 | CG5475-RA | 163..1078 | 16..928 | 4445 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24150788..24151703 | 928..16 | 4370 | 99.2 | Minus |
2L | 23513712 | 2L | 13781024..13781734 | 44..754 | 1215 | 78.1 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:32:17 has no hits.
BO13614.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:13 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-PB | 1..915 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:51 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5475-PA | 1..915 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:57 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RA | 157..1078 | 9..928 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:38 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38a-RA | 157..1078 | 9..928 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:38 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24150788..24151709 | 9..928 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:57 Download gff for
BO13614.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19976510..19977431 | 9..928 | 98 | | Minus |
BO13614.complete Sequence
1132 bp assembled on 2006-10-11
GenBank Submission: FJ632859
> BO13614.complete
GAAGTTATCAGTCGACATGTCAGTGTCCATTACAAAAAAGTTTTACAAGT
TGGATATAAATCGAACGGAATGGGAGATCCCGGATATATACCAGGATCTG
CAGCCCGTGGGATCGGGAGCTTACGGACAGGTGTCAAAGGCAGTTGTTCG
TGGCACCAATATGCATGTGGCCATTAAAAAGCTTGCCAGGCCTTTTCAAT
CAGCTGTCCATGCAAAGAGGACGTACCGGGAGCTTCGACTTTTAAAGCAT
ATGGATCATGAGAACGTAATCGGTCTGCTGGACATATTCCATCCACATCC
CGCTAATGGATCGCTGGAGAACTTCCAACAGGTGTACTTGGTTACCCACT
TGATGGACGCAGATCTGAACAACATCATACGGATGCAGCACTTGTCCGAC
GACCACGTCCAGTTTTTAGTCTACCAGATACTCCGTGGCTTGAAGTATAT
CCACAGCGCCGGAGTGATCCACCGTGATCTTAAGCCCTCAAACATTGCCG
TCAACGAGGATTGCGAGCTGCGCATTCTAGACTTCGGGCTGGCCCGCCCA
ACGGAGAACGAGATGACAGGCTATGTGGCCACGCGTTGGTACCGGGCACC
TGAAATAATGCTCAATTGGATGCACTACGACCAAACAGTGGACATCTGGT
CGGTGGGCTGCATCATGGCCGAACTAATTACCAGACGAACCCTCTTCCCA
GGCACCGACCATATTCACCAGCTAAACCTGATTATGGAGATGTTGGGCAC
GCCACCCGCCGAATTTTTGAAGAAGATCTCATCGGAAAGTGCACGTTCCT
ACATCCAGTCACTTCCGCCTATGAAGGGACGAAGTTTTAAAAATGTTTTT
AAGAACGCCAATCCGCTGGCCATTGATTTGCTGGAAAAGATGTTGGAGCT
AGATGCCGAAAAGCGGATCACAGCCGAGGAGGCTCTTTCCCATCCATATC
TGGAGAAGTATGCGGAGCCCAGCGTCGAGCAGACCTCACCACCATACGAT
CACAGCTTCGAGGATATGGATTTGCCCGTAGACAAATGGAAGGAATTGAT
CTACAAGGAGGTCACCAACTTTAAGCCCCCACCATCGTATGCTCAGGTTC
TAAAGGATGTAAAGGCAAGCTTTCTAGACCAT
BO13614.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38a-RC | 1101 | CG5475-PC | 1..1098 | 17..1114 | 5490 | 100 | Plus |
p38a-RB | 1101 | CG5475-PB | 1..1098 | 17..1114 | 5490 | 100 | Plus |
p38a-RA | 1101 | CG5475-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38a-RC | 1474 | CG5475-RC | 187..1285 | 16..1114 | 5495 | 100 | Plus |
p38a-RB | 1634 | CG5475-RB | 347..1445 | 16..1114 | 5495 | 100 | Plus |
p38a-RA | 1450 | CG5475-RA | 163..1261 | 16..1114 | 5495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24150605..24151703 | 1114..16 | 5495 | 100 | Minus |
2L | 23513712 | 2L | 13781024..13781994 | 44..1014 | 1270 | 75.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:38:24 has no hits.
BO13614.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:01 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RB | 1..1101 | 17..1117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:08 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RB | 393..1501 | 9..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:32 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RA | 164..1261 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:01 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mpk2-RB | 393..1501 | 9..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:06 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
p38a-RA | 164..1261 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:06 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24150602..24151702 | 17..1116 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:32 Download gff for
BO13614.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19976324..19977424 | 17..1116 | 99 | | Minus |
BO13614.pep Sequence
Translation from 16 to 1132
> BO13614.pep
MSVSITKKFYKLDINRTEWEIPDIYQDLQPVGSGAYGQVSKAVVRGTNMH
VAIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDIFHPHPANGSL
ENFQQVYLVTHLMDADLNNIIRMQHLSDDHVQFLVYQILRGLKYIHSAGV
IHRDLKPSNIAVNEDCELRILDFGLARPTENEMTGYVATRWYRAPEIMLN
WMHYDQTVDIWSVGCIMAELITRRTLFPGTDHIHQLNLIMEMLGTPPAEF
LKKISSESARSYIQSLPPMKGRSFKNVFKNANPLAIDLLEKMLELDAEKR
ITAEEALSHPYLEKYAEPSVEQTSPPYDHSFEDMDLPVDKWKELIYKEVT
NFKPPPSYAQVLKDVKASFLDH
BO13614.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
p38a-PC | 366 | CG5475-PC | 1..366 | 1..366 | 1926 | 100 | Plus |
p38a-PB | 366 | CG5475-PB | 1..366 | 1..366 | 1926 | 100 | Plus |
p38a-PA | 366 | CG5475-PA | 1..366 | 1..366 | 1926 | 100 | Plus |
p38b-PA | 365 | CG7393-PA | 7..361 | 8..362 | 1530 | 80.3 | Plus |
p38c-PA | 356 | CG33338-PA | 3..349 | 8..354 | 953 | 52.7 | Plus |