Clone BO13614 Report

Search the DGRC for BO13614

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptMpk2-RA
Protein status:BO13614.pep: validated full length
Sequenced Size:1132

Clone Sequence Records

BO13614.3prime Sequence

846 bp (727 high quality bases) assembled on 2006-05-08

> BO13614.3prime
ATGGTCTAGAAAGCTTGCCTTTACATCCTTTAGAACCTGAGCATACGATG
GTGGGGGCTTAAAGTTGGTGACCTCCTTGTAGATCAATTCCTTCCATTTG
TCTACGGGCAAATCCATATCCTCGAAGCTGTGATCGTATGGTGGTGAGGT
CTGCTCGACGCTGGGCTCCGCATACTTCTCCAGATATGGATGGGAAAGAG
CCTCCTCGGCTGTGATCCGCTTTTCGGCATCTAGCTCCAACATCTTTTCC
AGCAAATCAATGGCCAGCGGATTGGCGTTCTTAAAAACATTTTTAAAACT
TCGTCCCTTCATAGGCGGAAGTGACTGGATGTAGGAACGTGCACTTTCCG
ATGAGATCTTCTTCAAAAATTCGGCGGGTGGCGTGCCCAACATCTCCATA
ATCAGGTTTAGCTGGTGAATATGGTCGGTGCCTGGGAAGAGGGTTCGTCT
GGTAATTAGTTCGGCCATGATGCAGCCCACCGACCAGATGTCCACTGTTT
GGTCGTAGTGCATCCAATTGAGCATTATTTCAGGTGCCCGGTACCAACGC
GTGGCCACATAGCCTGTCATCTCGTTCTCCGTTGGGCGGGCCAGCCCGAA
GTCTAGAATGCGCAGCTCGCAATCCTCGTTGACGGCAATGTTTGAGGGCT
TAAGATCACGGTGGATCACTCCGGCGCTGTGGATATACTTCAAGCCACGG
AGTATCTGGTAGACTAAAAACTGGACGTGGCCGTCGGACAAGTGCTGCAT
CCCGATGATGTTGTTCAGATCTGCGTCCATCAAGTGGGTAACCAAGTACA
CCTGTTGGAAGTTCTCCAGCGATCCATTACCGGGAAGTGGAATGGA

BO13614.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG5475-PA 1101 Mpk2-RA 276..1098 841..19 3990 99.3 Minus
CG5475-PB 1101 Mpk2-RB 276..1098 841..19 3990 99.3 Minus
CG7393-PA 1098 p38b-RA 562..650 552..464 220 89.8 Minus
CG7393-PA 1098 p38b-RA 313..356 801..758 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:37:17
Subject Length Description Subject Range Query Range Score Percent Strand
p38a-RC 1474 CG5475-RC 463..1285 841..19 4040 99.4 Minus
p38a-RB 1634 CG5475-RB 623..1445 841..19 4040 99.4 Minus
p38a-RA 1450 CG5475-RA 439..1261 841..19 4040 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24150605..24151427 19..841 4040 99.4 Plus
2L 23513712 2L 13781291..13781994 822..119 925 75.4 Minus
Blast to na_te.dros performed on 2015-02-08 12:37:13 has no hits.

BO13614.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:12 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
Mpk2-PB 273..1101 16..845 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:50 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5475-PB 273..1101 16..845 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:04 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RA 436..1265 15..845 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:45 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
p38a-RA 436..1265 15..845 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:45 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24150601..24151430 15..845 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:04 Download gff for BO13614.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19976323..19977152 15..845 99   Plus

BO13614.5prime Sequence

928 bp (767 high quality bases) assembled on 2006-05-08

> BO13614.5prime
GAAGTTATCAGTCGACATGTCAGTGTCCATTACAAAAAAGTTTTACAAGT
TGGATATAAATCGAACGGAATGGGAGATCCCGGATATATACCAGGATCTG
CAGCCCGTGGGATCGGGAGCTTACGGACAGGTGTCAAAGGCAGTTGTTCG
TGGCACCAATATGCATGTGGCCATTAAAAAGCTTGCCAGGCCTTTTCAAT
CAGCTGTCCATGCAAAGAGGACGTACCGGGAGCTTCGACTTTTAAAGCAT
ATGGATCATGAGAACGTAATCGGTCTGCTGGACATATTCCATCCACATCC
CGCTAATGGATCGCTGGAGAACTTCCAACAGGTGTACTTGGTTACCCACT
TGATGGACGCAGATCTGAACAACATCATACGGATGCAGCACTTGTCCGAC
GACCACGTCCAGTTTTTAGTCTACCAGATACTCCGTGGCTTGAAGTATAT
CCACAGCGCCGGAGTGATCCACCGTGATCTTAAGCCCTCAAACATTGCCG
TCAACGAGGATTGCGAGCTGCGCATTCTAGACTTCGGGCTGGCCCGCCCA
ACGGAGAACGAGATGACAGGCTATGTGGCCACGCGTTGGTACCGGGCACC
TGAAATAATGCTCAATTGGATGCACTACGACCAAACAGTGGACATCTGGT
CGGTGGGCTGCATCATGGCCGAACTAATTACCAGACGAACCCTCTTCCCA
GGCACCGACCATATTCACCAGCTAAACCTGATTATGGAGATGTTGGGCAC
GCCACCCGCCGAATTTTTGAAGAAGATCTCATCGGAAAGTGCACGTTCCT
ACATCCAGTCACTTCCGCCTATGAAGGGACGAATTTTAAAAATGTTTTTA
AAAAGCCAATCCGCTGGCCATTGATTTGCTGGAAAGATGTTGGAGCTAAA
TGCCGAAAAGCGGATCACACCCAAGGAG

BO13614.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG5475-PA 1101 Mpk2-RA 1..817 17..833 4085 100 Plus
CG5475-PB 1101 Mpk2-RB 1..817 17..833 4085 100 Plus
CG7393-PA 1098 p38b-RA 562..650 581..669 220 89.8 Plus
CG5475-PA 1101 Mpk2-RA 870..906 883..919 160 97.2 Plus
CG5475-PB 1101 Mpk2-RB 870..906 883..919 160 97.2 Plus
CG5475-PA 1101 Mpk2-RA 841..871 855..885 155 100 Plus
CG5475-PB 1101 Mpk2-RB 841..871 855..885 155 100 Plus
CG7393-PA 1098 p38b-RA 313..362 332..381 150 92 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
p38a-RC 1474 CG5475-RC 187..1102 16..928 4445 99.2 Plus
p38a-RB 1634 CG5475-RB 347..1262 16..928 4445 99.2 Plus
p38a-RA 1450 CG5475-RA 163..1078 16..928 4445 99.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24150788..24151703 928..16 4370 99.2 Minus
2L 23513712 2L 13781024..13781734 44..754 1215 78.1 Plus
Blast to na_te.dros performed on 2015-02-10 22:32:17 has no hits.

BO13614.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:13 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
Mpk2-PB 1..915 17..928 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:51 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5475-PA 1..915 17..928 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:57 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RA 157..1078 9..928 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:38 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
p38a-RA 157..1078 9..928 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:38 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24150788..24151709 9..928 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:57 Download gff for BO13614.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19976510..19977431 9..928 98   Minus

BO13614.complete Sequence

1132 bp assembled on 2006-10-11

GenBank Submission: FJ632859

> BO13614.complete
GAAGTTATCAGTCGACATGTCAGTGTCCATTACAAAAAAGTTTTACAAGT
TGGATATAAATCGAACGGAATGGGAGATCCCGGATATATACCAGGATCTG
CAGCCCGTGGGATCGGGAGCTTACGGACAGGTGTCAAAGGCAGTTGTTCG
TGGCACCAATATGCATGTGGCCATTAAAAAGCTTGCCAGGCCTTTTCAAT
CAGCTGTCCATGCAAAGAGGACGTACCGGGAGCTTCGACTTTTAAAGCAT
ATGGATCATGAGAACGTAATCGGTCTGCTGGACATATTCCATCCACATCC
CGCTAATGGATCGCTGGAGAACTTCCAACAGGTGTACTTGGTTACCCACT
TGATGGACGCAGATCTGAACAACATCATACGGATGCAGCACTTGTCCGAC
GACCACGTCCAGTTTTTAGTCTACCAGATACTCCGTGGCTTGAAGTATAT
CCACAGCGCCGGAGTGATCCACCGTGATCTTAAGCCCTCAAACATTGCCG
TCAACGAGGATTGCGAGCTGCGCATTCTAGACTTCGGGCTGGCCCGCCCA
ACGGAGAACGAGATGACAGGCTATGTGGCCACGCGTTGGTACCGGGCACC
TGAAATAATGCTCAATTGGATGCACTACGACCAAACAGTGGACATCTGGT
CGGTGGGCTGCATCATGGCCGAACTAATTACCAGACGAACCCTCTTCCCA
GGCACCGACCATATTCACCAGCTAAACCTGATTATGGAGATGTTGGGCAC
GCCACCCGCCGAATTTTTGAAGAAGATCTCATCGGAAAGTGCACGTTCCT
ACATCCAGTCACTTCCGCCTATGAAGGGACGAAGTTTTAAAAATGTTTTT
AAGAACGCCAATCCGCTGGCCATTGATTTGCTGGAAAAGATGTTGGAGCT
AGATGCCGAAAAGCGGATCACAGCCGAGGAGGCTCTTTCCCATCCATATC
TGGAGAAGTATGCGGAGCCCAGCGTCGAGCAGACCTCACCACCATACGAT
CACAGCTTCGAGGATATGGATTTGCCCGTAGACAAATGGAAGGAATTGAT
CTACAAGGAGGTCACCAACTTTAAGCCCCCACCATCGTATGCTCAGGTTC
TAAAGGATGTAAAGGCAAGCTTTCTAGACCAT

BO13614.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
p38a-RC 1101 CG5475-PC 1..1098 17..1114 5490 100 Plus
p38a-RB 1101 CG5475-PB 1..1098 17..1114 5490 100 Plus
p38a-RA 1101 CG5475-PA 1..1098 17..1114 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:38:26
Subject Length Description Subject Range Query Range Score Percent Strand
p38a-RC 1474 CG5475-RC 187..1285 16..1114 5495 100 Plus
p38a-RB 1634 CG5475-RB 347..1445 16..1114 5495 100 Plus
p38a-RA 1450 CG5475-RA 163..1261 16..1114 5495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24150605..24151703 1114..16 5495 100 Minus
2L 23513712 2L 13781024..13781994 44..1014 1270 75.4 Plus
Blast to na_te.dros performed on 2014-11-27 13:38:24 has no hits.

BO13614.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:01 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RB 1..1101 17..1117 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:08 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RB 393..1501 9..1118 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 13:10:32 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RA 164..1261 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:01 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
Mpk2-RB 393..1501 9..1118 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:06 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
p38a-RA 164..1261 17..1116 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:06 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24150602..24151702 17..1116 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 13:10:32 Download gff for BO13614.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19976324..19977424 17..1116 99   Minus

BO13614.pep Sequence

Translation from 16 to 1132

> BO13614.pep
MSVSITKKFYKLDINRTEWEIPDIYQDLQPVGSGAYGQVSKAVVRGTNMH
VAIKKLARPFQSAVHAKRTYRELRLLKHMDHENVIGLLDIFHPHPANGSL
ENFQQVYLVTHLMDADLNNIIRMQHLSDDHVQFLVYQILRGLKYIHSAGV
IHRDLKPSNIAVNEDCELRILDFGLARPTENEMTGYVATRWYRAPEIMLN
WMHYDQTVDIWSVGCIMAELITRRTLFPGTDHIHQLNLIMEMLGTPPAEF
LKKISSESARSYIQSLPPMKGRSFKNVFKNANPLAIDLLEKMLELDAEKR
ITAEEALSHPYLEKYAEPSVEQTSPPYDHSFEDMDLPVDKWKELIYKEVT
NFKPPPSYAQVLKDVKASFLDH

BO13614.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:03
Subject Length Description Subject Range Query Range Score Percent Strand
p38a-PC 366 CG5475-PC 1..366 1..366 1926 100 Plus
p38a-PB 366 CG5475-PB 1..366 1..366 1926 100 Plus
p38a-PA 366 CG5475-PA 1..366 1..366 1926 100 Plus
p38b-PA 365 CG7393-PA 7..361 8..362 1530 80.3 Plus
p38c-PA 356 CG33338-PA 3..349 8..354 953 52.7 Plus