Clone BO13615 Report

Search the DGRC for BO13615

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:15
Vector:pDNR-Dual
Associated Gene/TranscriptFmrf-RA
Protein status:BO13615.pep: validated full length
Sequenced Size:1075

Clone Sequence Records

BO13615.3prime Sequence

859 bp (783 high quality bases) assembled on 2006-05-08

> BO13615.3prime
ATGGTCTAGAAAGCTTGCCTGGCCGAAGAACTGGTCCTGTTCCACACTCC
CATCCTGCGTGGTGGTCGCCTGTGCGCCGTTCTTCACCTGCTGATCCTGC
AGCTCCTGTTTCTTGAACAGCTCCGTCATGGCCTTGTCCACTGGACTGCG
TTCGCCTGGGTTGCCTTGATTGGACTTGACTGGCTTGGACTCGGGAGCCG
CCGGCTTCAAGCTCTTACCGAATCGAATGAAGTTTGAGTCCATCTTCCCG
GAGCGCACAAAATCCTGCGGAGCGGAACGCCCGAAGCGCATGAAGTTGTC
CGGGCGACCGAATCGCATGAAATCCTGTTTGGGACTGCGAAGCTCCTCGT
GGGGACTGCGTCCGAAGCGCATGAAATTGTCGGAGCGTCCGAACCTCATG
AAGTCCTCCGCCGGAGTGCGTCCGAACCTCATGAAATCCTCAGCCGGAGT
GCGTCCAAACCTCATGAAATCCTGCTTGGGATCTCGACCGAATCTCATGA
AATCCTGCTTGGGATCCCGACCGAATCTCATGAAGTCCTGCTTTGGATCC
CTGCCAAACCTCATGAAGTCCTGTTTCGGATCCCGACCAAACCGCATGAA
GTCCTGCTTGGGATCTCTGCCATACCGATCCATAGCTGCTCGCTTGGCCA
TGCCCTCCAGTTCATCGGATTCAGCATAGCTGCCCTCCGGTGGCAGCTGC
TCCGCCTGCCTCTTGCCGAAGTGCATGAAGTTGTCCTGCACGGACCTTCG
CTTGGCCTCCAGCTCGGGATCGTACTTGTAGCGCGGTTTCCGGCCGTGTT
TCTGGAAGTGCAGCACCACGGCGTTCTTCCAGTAGTCGATGCCCATCACA
GAGATGGGG

BO13615.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG2346-PA 1044 Fmrf-RA 201..1041 859..19 4155 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 309..1149 859..19 4175 99.8 Minus
FMRFa-RA 1427 CG2346-RA 553..750 582..385 570 85.9 Minus
FMRFa-RA 1427 CG2346-RA 586..783 615..418 570 85.9 Minus
FMRFa-RA 1427 CG2346-RA 542..755 560..353 320 77.6 Minus
FMRFa-RA 1427 CG2346-RA 608..815 626..413 320 77.6 Minus
FMRFa-RA 1427 CG2346-RA 553..614 516..455 190 87.1 Minus
FMRFa-RA 1427 CG2346-RA 652..713 615..554 190 87.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:26
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909339..9910179 859..19 4175 99.8 Minus
2R 25286936 2R 9909616..9909813 615..418 570 85.9 Minus
2R 25286936 2R 9909583..9909780 582..385 570 85.9 Minus
2R 25286936 2R 9909572..9909747 560..385 310 78.4 Minus
2R 25286936 2R 9909638..9909813 626..451 310 78.4 Minus
2R 25286936 2R 9909583..9909644 516..455 190 87.1 Minus
2R 25286936 2R 9909682..9909743 615..554 190 87.1 Minus
Blast to na_te.dros performed on 2015-02-10 15:11:30 has no hits.

BO13615.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:14 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
Fmrf-PA 201..1044 16..859 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:53 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2346-PA 201..1044 16..859 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:54 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 309..1149 19..859 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:41 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 309..1149 19..859 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:41 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9909339..9910179 19..859 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:54 Download gff for BO13615.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5796844..5797684 19..859 99   Minus

BO13615.5prime Sequence

887 bp (829 high quality bases) assembled on 2006-05-08

> BO13615.5prime
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGT

BO13615.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG2346-PA 1044 Fmrf-RA 1..871 17..887 4355 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 109..979 17..887 4355 100 Plus
FMRFa-RA 1427 CG2346-RA 553..750 494..691 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 586..783 461..658 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 542..755 516..723 320 77.6 Plus
FMRFa-RA 1427 CG2346-RA 608..815 450..663 320 77.6 Plus
FMRFa-RA 1427 CG2346-RA 553..614 560..621 190 87.1 Plus
FMRFa-RA 1427 CG2346-RA 652..713 461..522 190 87.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909139..9910009 17..887 4355 100 Plus
2R 25286936 2R 9909616..9909813 461..658 570 85.9 Plus
2R 25286936 2R 9909583..9909780 494..691 570 85.9 Plus
2R 25286936 2R 9909572..9909747 516..691 310 78.4 Plus
2R 25286936 2R 9909638..9909813 450..625 310 78.4 Plus
2R 25286936 2R 9909583..9909644 560..621 190 87.1 Plus
2R 25286936 2R 9909682..9909743 461..522 190 87.1 Plus
Blast to na_te.dros performed on 2015-02-13 08:22:01 has no hits.

BO13615.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:15 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
Fmrf-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:55 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2346-PA 1..871 17..887 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:55 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 103..979 8..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:07:16 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 103..979 8..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:07:16 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9909139..9910009 17..887 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:55 Download gff for BO13615.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5796644..5797514 17..887 100   Plus

BO13615.complete Sequence

1075 bp assembled on 2006-10-11

GenBank Submission: FJ632860

> BO13615.complete
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGTCCAAGCCAGTCAA
GTCCAATCAAGGCAACCCAGGCGAACGCAGTCCAGTGGACAAGGCCATGA
CGGAGCTGTTCAAGAAACAGGAGCTGCAGGATCAGCAGGTGAAGAACGGC
GCACAGGCGACCACCACGCAGGATGGGAGTGTGGAACAGGACCAGTTCTT
CGGCCAGGCAAGCTTTCTAGACCAT

BO13615.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:07:54
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1044 CG2346-PA 1..1041 17..1057 5205 100 Plus
FMRFa-RA 1044 CG2346-PA 445..642 494..691 570 85.9 Plus
FMRFa-RA 1044 CG2346-PA 478..675 461..658 570 85.9 Plus
FMRFa-RA 1044 CG2346-PA 434..609 516..691 310 78.4 Plus
FMRFa-RA 1044 CG2346-PA 500..675 450..625 310 78.4 Plus
FMRFa-RA 1044 CG2346-PA 445..506 560..621 190 87.1 Plus
FMRFa-RA 1044 CG2346-PA 544..605 461..522 190 87.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-RA 1427 CG2346-RA 109..1149 17..1057 5205 100 Plus
FMRFa-RA 1427 CG2346-RA 553..750 494..691 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 586..783 461..658 570 85.9 Plus
FMRFa-RA 1427 CG2346-RA 542..717 516..691 310 78.4 Plus
FMRFa-RA 1427 CG2346-RA 608..783 450..625 310 78.4 Plus
FMRFa-RA 1427 CG2346-RA 553..614 560..621 190 87.1 Plus
FMRFa-RA 1427 CG2346-RA 652..713 461..522 190 87.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9909139..9910179 17..1057 5205 100 Plus
2R 25286936 2R 9909583..9909780 494..691 570 85.9 Plus
2R 25286936 2R 9909616..9909813 461..658 570 85.9 Plus
2R 25286936 2R 9909572..9909747 516..691 310 78.4 Plus
2R 25286936 2R 9909638..9909813 450..625 310 78.4 Plus
2R 25286936 2R 9909583..9909644 560..621 190 87.1 Plus
2R 25286936 2R 9909682..9909743 461..522 190 87.1 Plus
Blast to na_te.dros performed on 2014-11-26 15:07:52 has no hits.

BO13615.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:02 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 1..1044 17..1060 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:10 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 106..1152 8..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:31 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 109..1149 17..1059 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:02 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
Fmrf-RA 106..1152 8..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:05 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
FMRFa-RA 109..1149 17..1059 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:05 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9909139..9910179 17..1059 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:31 Download gff for BO13615.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5796644..5797684 17..1059 99   Plus

BO13615.pep Sequence

Translation from 16 to 1075

> BO13615.pep
MGIALMFLLALYQMQSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVD
ALLGNDQTERAELEFRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPEL
EAKRRSVQDNFMHFGKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDP
KQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMR
FGRTPAEDFMRFGRTPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRF
GRPDNFMRFGRSAPQDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGN
PGERSPVDKAMTELFKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQASF
LDH

BO13615.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
FMRFa-PA 347 CG2346-PA 1..347 1..347 1838 100 Plus