Clone Sequence Records
BO13615.3prime Sequence
859 bp (783 high quality bases) assembled on 2006-05-08
> BO13615.3prime
ATGGTCTAGAAAGCTTGCCTGGCCGAAGAACTGGTCCTGTTCCACACTCC
CATCCTGCGTGGTGGTCGCCTGTGCGCCGTTCTTCACCTGCTGATCCTGC
AGCTCCTGTTTCTTGAACAGCTCCGTCATGGCCTTGTCCACTGGACTGCG
TTCGCCTGGGTTGCCTTGATTGGACTTGACTGGCTTGGACTCGGGAGCCG
CCGGCTTCAAGCTCTTACCGAATCGAATGAAGTTTGAGTCCATCTTCCCG
GAGCGCACAAAATCCTGCGGAGCGGAACGCCCGAAGCGCATGAAGTTGTC
CGGGCGACCGAATCGCATGAAATCCTGTTTGGGACTGCGAAGCTCCTCGT
GGGGACTGCGTCCGAAGCGCATGAAATTGTCGGAGCGTCCGAACCTCATG
AAGTCCTCCGCCGGAGTGCGTCCGAACCTCATGAAATCCTCAGCCGGAGT
GCGTCCAAACCTCATGAAATCCTGCTTGGGATCTCGACCGAATCTCATGA
AATCCTGCTTGGGATCCCGACCGAATCTCATGAAGTCCTGCTTTGGATCC
CTGCCAAACCTCATGAAGTCCTGTTTCGGATCCCGACCAAACCGCATGAA
GTCCTGCTTGGGATCTCTGCCATACCGATCCATAGCTGCTCGCTTGGCCA
TGCCCTCCAGTTCATCGGATTCAGCATAGCTGCCCTCCGGTGGCAGCTGC
TCCGCCTGCCTCTTGCCGAAGTGCATGAAGTTGTCCTGCACGGACCTTCG
CTTGGCCTCCAGCTCGGGATCGTACTTGTAGCGCGGTTTCCGGCCGTGTT
TCTGGAAGTGCAGCACCACGGCGTTCTTCCAGTAGTCGATGCCCATCACA
GAGATGGGG
BO13615.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2346-PA | 1044 | Fmrf-RA | 201..1041 | 859..19 | 4155 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:11:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 309..1149 | 859..19 | 4175 | 99.8 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 582..385 | 570 | 85.9 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 615..418 | 570 | 85.9 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 542..755 | 560..353 | 320 | 77.6 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 608..815 | 626..413 | 320 | 77.6 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 516..455 | 190 | 87.1 | Minus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 615..554 | 190 | 87.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:11:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909339..9910179 | 859..19 | 4175 | 99.8 | Minus |
2R | 25286936 | 2R | 9909616..9909813 | 615..418 | 570 | 85.9 | Minus |
2R | 25286936 | 2R | 9909583..9909780 | 582..385 | 570 | 85.9 | Minus |
2R | 25286936 | 2R | 9909572..9909747 | 560..385 | 310 | 78.4 | Minus |
2R | 25286936 | 2R | 9909638..9909813 | 626..451 | 310 | 78.4 | Minus |
2R | 25286936 | 2R | 9909583..9909644 | 516..455 | 190 | 87.1 | Minus |
2R | 25286936 | 2R | 9909682..9909743 | 615..554 | 190 | 87.1 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:11:30 has no hits.
BO13615.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:14 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-PA | 201..1044 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:53 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2346-PA | 201..1044 | 16..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:53:54 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 309..1149 | 19..859 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:51:41 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 309..1149 | 19..859 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:51:41 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909339..9910179 | 19..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:53:54 Download gff for
BO13615.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5796844..5797684 | 19..859 | 99 | | Minus |
BO13615.5prime Sequence
887 bp (829 high quality bases) assembled on 2006-05-08
> BO13615.5prime
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGT
BO13615.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2346-PA | 1044 | Fmrf-RA | 1..871 | 17..887 | 4355 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 109..979 | 17..887 | 4355 | 100 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 494..691 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 542..755 | 516..723 | 320 | 77.6 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 608..815 | 450..663 | 320 | 77.6 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 560..621 | 190 | 87.1 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 461..522 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909139..9910009 | 17..887 | 4355 | 100 | Plus |
2R | 25286936 | 2R | 9909616..9909813 | 461..658 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909583..9909780 | 494..691 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909572..9909747 | 516..691 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909638..9909813 | 450..625 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909583..9909644 | 560..621 | 190 | 87.1 | Plus |
2R | 25286936 | 2R | 9909682..9909743 | 461..522 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:22:01 has no hits.
BO13615.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:15 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:55 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2346-PA | 1..871 | 17..887 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:55 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 103..979 | 8..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:07:16 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 103..979 | 8..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:07:16 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909139..9910009 | 17..887 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:55 Download gff for
BO13615.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5796644..5797514 | 17..887 | 100 | | Plus |
BO13615.complete Sequence
1075 bp assembled on 2006-10-11
GenBank Submission: FJ632860
> BO13615.complete
GAAGTTATCAGTCGACATGGGCATTGCCTTGATGTTCCTGCTGGCCCTGT
ACCAGATGCAGTCGGCCATCCACAGCGAGATCATCGATACGCCCAACTAT
GCGGGCAACTCGTTGCAGGACGCTGACTCCGAGGTGAGTCCACCGCAGGA
CAATGACCTGGTAGATGCACTGCTCGGCAACGATCAGACCGAGAGGGCGG
AGCTGGAGTTCCGGCACCCCATCTCTGTGATTGGCATCGACTACTCGAAG
AACGCCGTGGTGCTGCACTTCCAGAAACACGGCCGGAAACCGCGCTACAA
GTACGATCCCGAGCTGGAGGCCAAGCGAAGGTCCGTGCAGGACAACTTCA
TGCACTTCGGCAAGAGGCAGGCGGAGCAGCTGCCACCGGAGGGCAGCTAT
GCTGAATCCGATGAACTGGAGGGCATGGCCAAGCGAGCAGCTATGGATCG
GTATGGCAGAGATCCCAAGCAGGACTTCATGCGGTTTGGTCGGGATCCGA
AACAGGACTTCATGAGGTTTGGCAGGGATCCAAAGCAGGACTTCATGAGA
TTCGGTCGGGATCCCAAGCAGGATTTCATGAGATTCGGTCGAGATCCCAA
GCAGGATTTCATGAGGTTTGGACGCACTCCGGCTGAGGATTTCATGAGGT
TCGGACGCACTCCGGCGGAGGACTTCATGAGGTTCGGACGCTCCGACAAT
TTCATGCGCTTCGGACGCAGTCCCCACGAGGAGCTTCGCAGTCCCAAACA
GGATTTCATGCGATTCGGTCGCCCGGACAACTTCATGCGCTTCGGGCGTT
CCGCTCCGCAGGATTTTGTGCGCTCCGGGAAGATGGACTCAAACTTCATT
CGATTCGGTAAGAGCTTGAAGCCGGCGGCTCCCGAGTCCAAGCCAGTCAA
GTCCAATCAAGGCAACCCAGGCGAACGCAGTCCAGTGGACAAGGCCATGA
CGGAGCTGTTCAAGAAACAGGAGCTGCAGGATCAGCAGGTGAAGAACGGC
GCACAGGCGACCACCACGCAGGATGGGAGTGTGGAACAGGACCAGTTCTT
CGGCCAGGCAAGCTTTCTAGACCAT
BO13615.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:07:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1044 | CG2346-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 445..642 | 494..691 | 570 | 85.9 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 478..675 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 434..609 | 516..691 | 310 | 78.4 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 500..675 | 450..625 | 310 | 78.4 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 445..506 | 560..621 | 190 | 87.1 | Plus |
FMRFa-RA | 1044 | CG2346-PA | 544..605 | 461..522 | 190 | 87.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-RA | 1427 | CG2346-RA | 109..1149 | 17..1057 | 5205 | 100 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..750 | 494..691 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 586..783 | 461..658 | 570 | 85.9 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 542..717 | 516..691 | 310 | 78.4 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 608..783 | 450..625 | 310 | 78.4 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 553..614 | 560..621 | 190 | 87.1 | Plus |
FMRFa-RA | 1427 | CG2346-RA | 652..713 | 461..522 | 190 | 87.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9909139..9910179 | 17..1057 | 5205 | 100 | Plus |
2R | 25286936 | 2R | 9909583..9909780 | 494..691 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909616..9909813 | 461..658 | 570 | 85.9 | Plus |
2R | 25286936 | 2R | 9909572..9909747 | 516..691 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909638..9909813 | 450..625 | 310 | 78.4 | Plus |
2R | 25286936 | 2R | 9909583..9909644 | 560..621 | 190 | 87.1 | Plus |
2R | 25286936 | 2R | 9909682..9909743 | 461..522 | 190 | 87.1 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:07:52 has no hits.
BO13615.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:02 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 1..1044 | 17..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:10 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 106..1152 | 8..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:48:31 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 109..1149 | 17..1059 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:02 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fmrf-RA | 106..1152 | 8..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:07:05 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
FMRFa-RA | 109..1149 | 17..1059 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:07:05 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9909139..9910179 | 17..1059 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:48:31 Download gff for
BO13615.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5796644..5797684 | 17..1059 | 99 | | Plus |
BO13615.pep Sequence
Translation from 16 to 1075
> BO13615.pep
MGIALMFLLALYQMQSAIHSEIIDTPNYAGNSLQDADSEVSPPQDNDLVD
ALLGNDQTERAELEFRHPISVIGIDYSKNAVVLHFQKHGRKPRYKYDPEL
EAKRRSVQDNFMHFGKRQAEQLPPEGSYAESDELEGMAKRAAMDRYGRDP
KQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMRFGRDPKQDFMR
FGRTPAEDFMRFGRTPAEDFMRFGRSDNFMRFGRSPHEELRSPKQDFMRF
GRPDNFMRFGRSAPQDFVRSGKMDSNFIRFGKSLKPAAPESKPVKSNQGN
PGERSPVDKAMTELFKKQELQDQQVKNGAQATTTQDGSVEQDQFFGQASF
LDH
BO13615.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
FMRFa-PA | 347 | CG2346-PA | 1..347 | 1..347 | 1838 | 100 | Plus |