Clone Sequence Records
BO13616.3prime Sequence
826 bp (778 high quality bases) assembled on 2006-05-08
> BO13616.3prime
ATGGTCTAGAAAGCTTGCCAGGAAGTTAACATTACTCAGTATGCTTTCGA
TGGTGGAGTTCACCTCGCGCTCCTTGGGCGCCGGATCGCACTGTAGCTGG
AAGTAGCCCGGCAGATCCTGCTCCGCCTCGAACGCACTCGTCCTGTTGGC
GCCCAGCCAGAGGTCGAGTCGATCGTAGATGACTCCAGTGGGTCCCTGCT
GCAGGAACCAGTCGATGGACTCCCGATCCTTGAGGTCCGAGCCCCAGAGC
AGGACAATGGGCACCTGTGCCTTTGCCCGTTGCACCAAACCCGGATCCGC
CTTGACGAACACGGCGTTGGGTGACACGCCGCCCAGATCGAAGGCCTGGG
CAAAGTTGACGCTCTGCTCCACGGTGCTGGTGCGGGGATCGTTGAAGACG
TTCTCCTTGCTGCTGGAGAGGAAGAGCACCGGGTACATGTGCTGCTTGAA
GCGCAGCAGGGAGCATAAGTCCGCGTCGAAGCTCTTGATCACATTGAGTC
GACCGCAGCCATGTCGTCGCACCACAGCCAGAATGCGATCCGCGAACAGG
TTCTTGTCCAGCGTCTGTTCGCTCTCAAACAGTCCATCGGCCCTCTGCTG
TGGCCACTTGATCTCGATGTCGAATCCGGTGGACAGGTTCACCCGCTCAA
AGAAGTCCTGCAGTGTGGGGAAAAGTCGCTGCTCCGGCGGTTCCACGTTG
TTGTGCGCCGGATACTCGACAATCTTGTTGCCCACGATCTGGTAGGTTTT
CAGATCCTTGAGCTGCTCATAGGATATGTCCTTTAGCAGCACCTCGGTCA
AATCATCTTTGCTCGTTGGGGTCTTC
BO13616.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PA | 2040 | CG9394-RA | 1230..2037 | 826..19 | 4040 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 1267..2074 | 826..19 | 4040 | 100 | Minus |
| CG9394-RA | 2312 | CG9394-RA | 1445..2252 | 826..19 | 4040 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21119838..21120645 | 826..19 | 4040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:25:10 has no hits.
BO13616.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:16 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1230..2040 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:56 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1230..2040 | 18..826 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:39:19 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 1445..2252 | 19..826 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:52 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 1445..2252 | 19..826 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:52 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21119838..21120645 | 19..826 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:39:19 Download gff for
BO13616.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17007343..17008150 | 19..826 | 100 | | Minus |
BO13616.5prime Sequence
936 bp (812 high quality bases) assembled on 2006-05-08
> BO13616.5prime
GAAGTTATCAGTCGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCAT
TCACCGTCGCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTC
TGTGACACCTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCC
CCTCAAGCGAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGG
ATGCGGATCAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTG
CCAGTGCTGGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCAC
TGCAATCCTGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCA
GCGTTGAGTATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTG
CAGATTCGCCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCAC
CAAGTTCAGTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGC
GCCAGTTGTCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTG
AAGCTCTTCCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCA
GGAGAAGCTGCGTCTGCGTTTGCAACCAGTAGATCCAAAGACTCTAGCGC
CCATCCTAAGTTCGGCACGTGCCAATGTGGAGTACGTGCGAATGGCGTAC
GGTGACAGTAAGCTGCGGGTGCAGCCGGAGTACGGAGTGCCCTACGCCAC
CGGTGACATCCTCATGTTCCATGTGAACCTGGAACAGCTGGATCGAGTGG
CCTATCTGGTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGT
CTCCTAGGATACTCGCACCTGCTGCACACCTCGTTCTCCGGCACTGAAAG
CGATGTGTCCATCGACCTTATTTCGCCGCTCTGGCA
BO13616.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PA | 2040 | CG9394-RA | 1..920 | 17..936 | 4575 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:34:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 35..957 | 14..936 | 4600 | 99.9 | Plus |
| CG9394-RA | 2312 | CG9394-RA | 213..1135 | 14..936 | 4600 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:34:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21118606..21119528 | 14..936 | 4600 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:34:49 has no hits.
BO13616.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:18 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:57 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-PA | 1..919 | 17..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:41:09 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..1134 | 14..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:53:41 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..1134 | 14..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:53:41 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21118606..21119527 | 14..935 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:41:09 Download gff for
BO13616.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17006111..17007032 | 14..935 | 99 | | Plus |
BO13616.complete Sequence
2071 bp assembled on 2008-08-14
GenBank Submission: FJ632861
> BO13616.complete
GAAGTTATCAGTCGACATGTCGGTGTCCTGGTCGAAGACTTTCGCGGCAT
TCACCGTCGCCTGGCTCAGTGCCCTGTGCCTGCTGCCCGTGGAGACATTC
TGTGACACCTCCTACTACGAGAAGTACTACGCGGCGCGGCGCTATGTGCC
CCTCAAGCGAAATGCTCCGCTGGTCTTCAACTTTACCCTAACGCTGCCGG
ATGCGGATCAACTGGCGTCCTTCGAGCGGCCCGCCCTGGTGGGCAATCTG
CCAGTGCTGGGCGCCTGGCAAGCGGGACGCGCTGTGCTCCTCAACCGCAC
TGCAATCCTGAATGTTTGGAGCGCCTCCGTGGAGATACCGCAAAACAGCA
GCGTTGAGTATCGCTACTTTGCCGCCGCCGTTGGCCAGAGTGGAGCCGTG
CAGATTCGCCGCTGGGAGTCGCATGTCCAGGCAAGGACCTTTAATACCAC
CAAGTTCAGTGGCAATCGCAGCGATGAGTTCGGACTCATTGGCAATGAGC
GCCAGTTGTCGCGTGGCTGGCTTCAGGACTCGGGCAACATTCTGCAGTTG
AAGCTCTTCCGCGAGGCTCTGAGCTTGGAGGAGCAACCGGAGGTGGGGCA
GGAGAAGCTGCGTCTGCGTTTGCAACCAGTAGATCCAAAGACTCTAGCGC
CCATCCTAAGTTCGGCACGTGCCAATGTGGAGTACGTGCGAATGGCGTAC
GGTGACAGTAAGCTGCGGGTGCAGCCGGAGTACGGAGTGCCCTACGCCAC
CGGTGACATCCTCATGTTCCATGTGAACCTGGAACAGCTGGATCGAGTGG
CCTATCTGGTGGAAGTTTATGCCGAACAACCGGATGAGGACCTGGTCCGT
CTCCTAGGATACTCGCACCTGCTGCACACCTCGTTCTCCGGCACTGAAGG
CGATGTGTCCATCGACCTTATTTCGCCGCTCTGGCAGCGCGTGGTGGGTC
AACTGCGTATTGAGTACCTGCACATTCGGCCCATGGAGAAGGATGGCTTC
GATCTGCGCACCAGCTTCGCCAACTACTGGCGCTCCAATTGGACAGCCCT
GGAGATTGGCCATCGGGGATTGGGAAAATCTCTTACGGTCACCACGAATG
CGGCTCCGCTTATCGAGAACACGGTGGCCACCATGCTGGCCTCCTCTGAA
TTGGGCGCTGATCTCGTGGAGTTTGATGTGCAGCTGACCAGCGACCTGGT
GCCCATCATCCACCATGATTTTTCCATTCGCGTCTGCATTGACTCGAAGA
CCCCAACGAGCAAAGATGATTTGACCGAGGTGCTGCTAAAGGACATATCC
TATGAGCAGCTCAAGGATCTGAAAACCTACCAGATCGTGGGCAACAAGAT
TGTCGAGTATCCGGCGCACAACAACGTGGAACCGCCGGAGCAGCGACTTT
TCCCCACACTGCAGGACTTCTTTGAGCGGGTGAACCTGTCCACCGGATTC
GACATCGAGATCAAGTGGCCACAGCAGAGGGCCGATGGACTGTTTGAGAG
CGAACAGACGCTGGACAAGAACCTGTTCGCGGATCGCATTCTGGCTGTGG
TGCGACGACATGGCTGCGGTCGACTCAATGTGATCAAGAGCTTCGACGCG
GACTTATGCTCCCTGCTGCGCTTCAAGCAGCACATGTACCCGGTGCTCTT
CCTCTCCAGCAGCAAGGAGAACGTCTTCAACGATCCCCGCACCAGCACCG
TGGAGCAGAGCGTCAACTTTGCCCAGGCCTTCGATCTGGGCGGCGTGTCA
CCCAACGCCGTGTTCGTCAAGGCGGATCCGGGTTTGGTGCAACGGGCAAA
GGCACAGGTGCCCATTGTCCTGCTCTGGGGCTCGGACCTCAAGGATCGGG
AGTCCATCGACTGGTTCCTGCAGCAGGGACCCACTGGAGTCATCTACGAT
CGACTCGACCTCTGGCTGGGCGCCAACAGGACGAGTGCGTTCGAGGCGGA
GCAGGATCTGCCGGGCTACTTCCAGCTACAGTGCGATCCGGCGCCCAAGG
AGCGCGAGGTGAACTCCACCATCGAAAGCATACTGAGTAATGTTAACTTC
CTGGCAAGCTTTCTAGACCAT
BO13616.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:21:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2040 | CG9394-PB | 1..2037 | 17..2053 | 10185 | 100 | Plus |
| CG9394-RA | 2040 | CG9394-PA | 1..2037 | 17..2053 | 10185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:21:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-RB | 2134 | CG9394-RB | 35..2074 | 14..2053 | 10200 | 100 | Plus |
| CG9394-RA | 2312 | CG9394-RA | 213..2252 | 14..2053 | 10200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:21:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21118606..21120645 | 14..2053 | 10200 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:21:53 has no hits.
BO13616.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:41:37 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 213..2252 | 14..2053 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:58 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2252 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:03:05 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2252 | 17..2055 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:47 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9394-RA | 216..2252 | 17..2055 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:47 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21118609..21120645 | 17..2055 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:58 Download gff for
BO13616.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17006114..17008150 | 17..2055 | 99 | | Plus |
BO13616.pep Sequence
Translation from 16 to 2071
> BO13616.pep
MSVSWSKTFAAFTVAWLSALCLLPVETFCDTSYYEKYYAARRYVPLKRNA
PLVFNFTLTLPDADQLASFERPALVGNLPVLGAWQAGRAVLLNRTAILNV
WSASVEIPQNSSVEYRYFAAAVGQSGAVQIRRWESHVQARTFNTTKFSGN
RSDEFGLIGNERQLSRGWLQDSGNILQLKLFREALSLEEQPEVGQEKLRL
RLQPVDPKTLAPILSSARANVEYVRMAYGDSKLRVQPEYGVPYATGDILM
FHVNLEQLDRVAYLVEVYAEQPDEDLVRLLGYSHLLHTSFSGTEGDVSID
LISPLWQRVVGQLRIEYLHIRPMEKDGFDLRTSFANYWRSNWTALEIGHR
GLGKSLTVTTNAAPLIENTVATMLASSELGADLVEFDVQLTSDLVPIIHH
DFSIRVCIDSKTPTSKDDLTEVLLKDISYEQLKDLKTYQIVGNKIVEYPA
HNNVEPPEQRLFPTLQDFFERVNLSTGFDIEIKWPQQRADGLFESEQTLD
KNLFADRILAVVRRHGCGRLNVIKSFDADLCSLLRFKQHMYPVLFLSSSK
ENVFNDPRTSTVEQSVNFAQAFDLGGVSPNAVFVKADPGLVQRAKAQVPI
VLLWGSDLKDRESIDWFLQQGPTGVIYDRLDLWLGANRTSAFEAEQDLPG
YFQLQCDPAPKEREVNSTIESILSNVNFLASFLDH
BO13616.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9394-PB | 679 | CG9394-PB | 1..679 | 1..679 | 3513 | 100 | Plus |
| CG9394-PA | 679 | CG9394-PA | 1..679 | 1..679 | 3513 | 100 | Plus |
| CG18135-PB | 636 | CG18135-PB | 39..634 | 54..656 | 1001 | 37 | Plus |
| CG18135-PE | 649 | CG18135-PE | 52..647 | 54..656 | 1001 | 37 | Plus |
| CG18135-PA | 653 | CG18135-PA | 56..651 | 54..656 | 1001 | 37 | Plus |
