Clone BO13617 Report

Search the DGRC for BO13617

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG31313-RA
Protein status:BO13617.pep: validated full length
Sequenced Size:406

Clone Sequence Records

BO13617.3prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO13617.3prime
ATGGTCTAGAAAGCTTGCCCAGGTCTTCTCGAGCACATCTTCATCCTTGC
ACTGGACCTTCACATTGGTGGCCTCCCCCTGCTCATGCAGCCATGGCCTG
TCCCAGATCTTTACGTTGCACTCCTTGGTCTCGGCTCCGTTGGACAGCTT
CACCTCGAATTTGTAGAGCGACCCAGCCACCAGTTGGCTAGATGCCGAGA
TCACATTCACTACCTGATAATTGGGACCATCTCCTGTGGCAAGTTTGGCG
AGCGTTGTGTCCAAGAGCTCCTTAGCCTTGGATAAGTCATCTCCATCCAG
CGGCTTCGGGGCACCGGGCGGCAACCTCGGGTTAGCAAAGGCAACCGCCA
GGGTCACAGACAGAACAAAGATCACTTTCACGGACTGCATGTCGACTGAT
AACT

BO13617.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-PA 375 CG31313-RA 1..372 390..19 1860 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-RB 470 CG31313-RB 32..403 390..19 1860 100 Minus
CG31313-RA 782 CG31313-RA 32..403 390..19 1860 100 Minus
CG31313-RC 645 CG31313-RC 32..414 390..19 1740 97.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14566811..14567006 19..214 980 100 Plus
3R 32079331 3R 14567164..14567280 214..330 585 100 Plus
3R 32079331 3R 14567339..14567398 331..390 300 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:30:56 has no hits.

BO13617.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:19 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:59 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-PA 1..375 18..390 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:08 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 20..403 19..403 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:08 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 20..403 19..403 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:03:08 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14566811..14567006 19..214 100 <- Plus
3R 14567165..14567280 215..330 100 <- Plus
3R 14567339..14567410 331..403 93   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:08 Download gff for BO13617.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10392533..10392728 19..214 100 <- Plus
arm_3R 10392887..10393002 215..330 100 <- Plus
arm_3R 10393061..10393132 331..403 93   Plus

BO13617.5prime Sequence

404 bp (403 high quality bases) assembled on 2006-05-08

> BO13617.5prime
GAAGTTATCAGTCGACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTG
TGACCCTGGCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCG
AAGCCGCTGGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACAC
AACGCTCGCCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGA
ATGTGATCTCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTC
GAGGTGAAGCTGTCCAACGGAGCCGAGACCAAGGAGTGCAACGTAAAGAT
CTGGGACAGGCCATGGCTGCATGAGCAGGGGGAGGCCACCAATGTGAAGG
TCCAGTGCAAGGATGAAGATGTGCTCGAGAAGACCTGGGCAAGCTTTCTA
GACC

BO13617.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-PA 375 CG31313-RA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-RB 470 CG31313-RB 32..403 17..388 1860 100 Plus
CG31313-RA 782 CG31313-RA 32..403 17..388 1860 100 Plus
CG31313-RC 645 CG31313-RC 32..414 17..388 1740 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:49:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14566811..14567006 388..193 980 100 Minus
3R 32079331 3R 14567164..14567280 193..77 585 100 Minus
3R 32079331 3R 14567339..14567398 76..17 300 100 Minus
Blast to na_te.dros performed on 2015-02-09 08:49:36 has no hits.

BO13617.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:20 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:01 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-PA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:30 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 20..403 4..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:32 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 20..403 4..388 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:32 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14566811..14567006 193..388 100 <- Minus
3R 14567165..14567280 77..192 100 <- Minus
3R 14567339..14567410 4..76 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:30 Download gff for BO13617.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10392533..10392728 193..388 100 <- Minus
arm_3R 10392887..10393002 77..192 100 <- Minus
arm_3R 10393061..10393132 4..76 93   Minus

BO13617.complete Sequence

406 bp assembled on 2006-10-11

GenBank Submission: FJ632862

> BO13617.complete
GAAGTTATCAGTCGACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTG
TGACCCTGGCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCG
AAGCCGCTGGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACAC
AACGCTCGCCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGA
ATGTGATCTCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTC
GAGGTGAAGCTGTCCAACGGAGCCGAGACCAAGGAGTGCAACGTAAAGAT
CTGGGACAGGCCATGGCTGCATGAGCAGGGGGAGGCCACCAATGTGAAGG
TCCAGTGCAAGGATGAAGATGTGCTCGAGAAGACCTGGGCAAGCTTTCTA
GACCAT

BO13617.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-RB 375 CG31313-PB 1..372 17..388 1860 100 Plus
CG31313-RA 375 CG31313-PA 1..372 17..388 1860 100 Plus
CG31313-RC 180 CG31313-PC 1..177 17..193 885 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-RB 470 CG31313-RB 32..403 17..388 1860 100 Plus
CG31313-RA 782 CG31313-RA 32..403 17..388 1860 100 Plus
CG31313-RC 645 CG31313-RC 32..414 17..388 1715 97.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14566811..14567006 388..193 980 100 Minus
3R 32079331 3R 14567164..14567280 193..77 585 100 Minus
3R 32079331 3R 14567339..14567398 76..17 300 100 Minus
Blast to na_te.dros performed on 2014-11-27 15:16:53 has no hits.

BO13617.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:03 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 1..375 17..389 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:11 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 17..400 4..388 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:28 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 32..403 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:04 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 17..400 4..388 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:04 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
CG31313-RA 32..403 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:04 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14566809..14567006 193..390 98 <- Minus
3R 14567165..14567280 77..192 100 <- Minus
3R 14567339..14567398 17..76 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:28 Download gff for BO13617.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10393061..10393120 17..76 100   Minus
arm_3R 10392531..10392728 193..390 98 <- Minus
arm_3R 10392887..10393002 77..192 100 <- Minus

BO13617.pep Sequence

Translation from 16 to 406

> BO13617.pep
MQSVKVIFVLSVTLAVAFANPRLPPGAPKPLDGDDLSKAKELLDTTLAKL
ATGDGPNYQVVNVISASSQLVAGSLYKFEVKLSNGAETKECNVKIWDRPW
LHEQGEATNVKVQCKDEDVLEKTWASFLDH

BO13617.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG31313-PB 124 CG31313-PB 1..124 1..124 641 100 Plus
CG31313-PA 124 CG31313-PA 1..124 1..124 641 100 Plus
CG31313-PC 59 CG31313-PC 1..59 1..59 297 100 Plus
Cys-PA 126 CG8050-PA 4..126 1..124 284 44.8 Plus
CG8066-PB 104 CG8066-PB 8..104 26..124 251 49.5 Plus