Clone Sequence Records
BO13617.3prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO13617.3prime
ATGGTCTAGAAAGCTTGCCCAGGTCTTCTCGAGCACATCTTCATCCTTGC
ACTGGACCTTCACATTGGTGGCCTCCCCCTGCTCATGCAGCCATGGCCTG
TCCCAGATCTTTACGTTGCACTCCTTGGTCTCGGCTCCGTTGGACAGCTT
CACCTCGAATTTGTAGAGCGACCCAGCCACCAGTTGGCTAGATGCCGAGA
TCACATTCACTACCTGATAATTGGGACCATCTCCTGTGGCAAGTTTGGCG
AGCGTTGTGTCCAAGAGCTCCTTAGCCTTGGATAAGTCATCTCCATCCAG
CGGCTTCGGGGCACCGGGCGGCAACCTCGGGTTAGCAAAGGCAACCGCCA
GGGTCACAGACAGAACAAAGATCACTTTCACGGACTGCATGTCGACTGAT
AACT
BO13617.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-PA | 375 | CG31313-RA | 1..372 | 390..19 | 1860 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-RB | 470 | CG31313-RB | 32..403 | 390..19 | 1860 | 100 | Minus |
CG31313-RA | 782 | CG31313-RA | 32..403 | 390..19 | 1860 | 100 | Minus |
CG31313-RC | 645 | CG31313-RC | 32..414 | 390..19 | 1740 | 97.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14566811..14567006 | 19..214 | 980 | 100 | Plus |
3R | 32079331 | 3R | 14567164..14567280 | 214..330 | 585 | 100 | Plus |
3R | 32079331 | 3R | 14567339..14567398 | 331..390 | 300 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:30:56 has no hits.
BO13617.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:19 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:55:59 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-PA | 1..375 | 18..390 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 14:59:08 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 20..403 | 19..403 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:03:08 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 20..403 | 19..403 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:03:08 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14566811..14567006 | 19..214 | 100 | <- | Plus |
3R | 14567165..14567280 | 215..330 | 100 | <- | Plus |
3R | 14567339..14567410 | 331..403 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 14:59:08 Download gff for
BO13617.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10392533..10392728 | 19..214 | 100 | <- | Plus |
arm_3R | 10392887..10393002 | 215..330 | 100 | <- | Plus |
arm_3R | 10393061..10393132 | 331..403 | 93 | | Plus |
BO13617.5prime Sequence
404 bp (403 high quality bases) assembled on 2006-05-08
> BO13617.5prime
GAAGTTATCAGTCGACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTG
TGACCCTGGCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCG
AAGCCGCTGGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACAC
AACGCTCGCCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGA
ATGTGATCTCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTC
GAGGTGAAGCTGTCCAACGGAGCCGAGACCAAGGAGTGCAACGTAAAGAT
CTGGGACAGGCCATGGCTGCATGAGCAGGGGGAGGCCACCAATGTGAAGG
TCCAGTGCAAGGATGAAGATGTGCTCGAGAAGACCTGGGCAAGCTTTCTA
GACC
BO13617.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-PA | 375 | CG31313-RA | 1..372 | 17..388 | 1860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:49:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-RB | 470 | CG31313-RB | 32..403 | 17..388 | 1860 | 100 | Plus |
CG31313-RA | 782 | CG31313-RA | 32..403 | 17..388 | 1860 | 100 | Plus |
CG31313-RC | 645 | CG31313-RC | 32..414 | 17..388 | 1740 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:49:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14566811..14567006 | 388..193 | 980 | 100 | Minus |
3R | 32079331 | 3R | 14567164..14567280 | 193..77 | 585 | 100 | Minus |
3R | 32079331 | 3R | 14567339..14567398 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 08:49:36 has no hits.
BO13617.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:20 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:01 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-PA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:13:30 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 20..403 | 4..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:43:32 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 20..403 | 4..388 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:43:32 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14566811..14567006 | 193..388 | 100 | <- | Minus |
3R | 14567165..14567280 | 77..192 | 100 | <- | Minus |
3R | 14567339..14567410 | 4..76 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:13:30 Download gff for
BO13617.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10392533..10392728 | 193..388 | 100 | <- | Minus |
arm_3R | 10392887..10393002 | 77..192 | 100 | <- | Minus |
arm_3R | 10393061..10393132 | 4..76 | 93 | | Minus |
BO13617.complete Sequence
406 bp assembled on 2006-10-11
GenBank Submission: FJ632862
> BO13617.complete
GAAGTTATCAGTCGACATGCAGTCCGTGAAAGTGATCTTTGTTCTGTCTG
TGACCCTGGCGGTTGCCTTTGCTAACCCGAGGTTGCCGCCCGGTGCCCCG
AAGCCGCTGGATGGAGATGACTTATCCAAGGCTAAGGAGCTCTTGGACAC
AACGCTCGCCAAACTTGCCACAGGAGATGGTCCCAATTATCAGGTAGTGA
ATGTGATCTCGGCATCTAGCCAACTGGTGGCTGGGTCGCTCTACAAATTC
GAGGTGAAGCTGTCCAACGGAGCCGAGACCAAGGAGTGCAACGTAAAGAT
CTGGGACAGGCCATGGCTGCATGAGCAGGGGGAGGCCACCAATGTGAAGG
TCCAGTGCAAGGATGAAGATGTGCTCGAGAAGACCTGGGCAAGCTTTCTA
GACCAT
BO13617.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:16:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-RB | 375 | CG31313-PB | 1..372 | 17..388 | 1860 | 100 | Plus |
CG31313-RA | 375 | CG31313-PA | 1..372 | 17..388 | 1860 | 100 | Plus |
CG31313-RC | 180 | CG31313-PC | 1..177 | 17..193 | 885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-RB | 470 | CG31313-RB | 32..403 | 17..388 | 1860 | 100 | Plus |
CG31313-RA | 782 | CG31313-RA | 32..403 | 17..388 | 1860 | 100 | Plus |
CG31313-RC | 645 | CG31313-RC | 32..414 | 17..388 | 1715 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14566811..14567006 | 388..193 | 980 | 100 | Minus |
3R | 32079331 | 3R | 14567164..14567280 | 193..77 | 585 | 100 | Minus |
3R | 32079331 | 3R | 14567339..14567398 | 76..17 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:16:53 has no hits.
BO13617.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:03 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 1..375 | 17..389 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:11 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 17..400 | 4..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:28 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 32..403 | 17..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:04 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 17..400 | 4..388 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:04:04 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31313-RA | 32..403 | 17..390 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:04:04 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14566809..14567006 | 193..390 | 98 | <- | Minus |
3R | 14567165..14567280 | 77..192 | 100 | <- | Minus |
3R | 14567339..14567398 | 17..76 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:28 Download gff for
BO13617.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10393061..10393120 | 17..76 | 100 | | Minus |
arm_3R | 10392531..10392728 | 193..390 | 98 | <- | Minus |
arm_3R | 10392887..10393002 | 77..192 | 100 | <- | Minus |
BO13617.pep Sequence
Translation from 16 to 406
> BO13617.pep
MQSVKVIFVLSVTLAVAFANPRLPPGAPKPLDGDDLSKAKELLDTTLAKL
ATGDGPNYQVVNVISASSQLVAGSLYKFEVKLSNGAETKECNVKIWDRPW
LHEQGEATNVKVQCKDEDVLEKTWASFLDH
BO13617.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31313-PB | 124 | CG31313-PB | 1..124 | 1..124 | 641 | 100 | Plus |
CG31313-PA | 124 | CG31313-PA | 1..124 | 1..124 | 641 | 100 | Plus |
CG31313-PC | 59 | CG31313-PC | 1..59 | 1..59 | 297 | 100 | Plus |
Cys-PA | 126 | CG8050-PA | 4..126 | 1..124 | 284 | 44.8 | Plus |
CG8066-PB | 104 | CG8066-PB | 8..104 | 26..124 | 251 | 49.5 | Plus |