Clone Sequence Records
BO13618.3prime Sequence
758 bp (711 high quality bases) assembled on 2006-05-08
> BO13618.3prime
ATGGTCTAGAAAGCTTGCAAAGTTGCGATAAGATGATCCAAATCCATCCC
GCGAGTCGAACACATCCCGCTCGATTTGGGGAGGTCCTCTTCCATCCGAT
GTGTAGCTATAGGATTCGCTCCGGTAAAAGTTGTTAGAAGAGCCCCCGGA
ACCAAGGGGACCACTTCTACCAGTCGGAATACTGGAACCACCGGCGATAA
GGGGGATAATGGAACCACTGGATGGCATAGGTACCGGTCGAGATACAAAG
GTTCCTAAGTTTTGATTGCGGAATGGGGAGTCAGGAATTGGTCGAATGCC
TCTGCCACGGAAATCCGGGGAACTGGGAAAAGGTCTGTTGTCGAAGCCGC
TGCCTCTGGGACCCACATTGTAATCGGTTTGGAATGCATTGTCATAGTTG
GGTTGACGAATGGGGAAACCGTTGGATCGGGGAGGGATCTGAGGATAAAA
CGGTCGAGGTTGGAAGGGGATAGGTCGGAGTGGAACGTCCTCCTCTTCGT
AGGTGTCGGTCACCTCCTCCACTTCACCGCTAGATCTCTCTAGAAACTCG
ACATCGTTATTTGCTTCGGCCAGGGCAGAGCTGTTTCCGCCATTTAAGGA
TGATCTATTAGAAATAGGTTTGTTGCTCGATTTCGGACTCACTGGCTTGA
AGAGATGCGTGGGAATGTTGATAGTTTCACGAGGCACCCTTAGCTTGGGA
TCCGGCAGAGTGTGGCATATCCCCTGAGCGATGAACAGACAGCCCAGCAA
AACGAATT
BO13618.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-PA | 756 | CG10680-RA | 14..753 | 758..19 | 3700 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 1272 | CG10680-RB | 109..848 | 758..19 | 3700 | 100 | Minus |
CG10680-RA | 1026 | CG10680-RA | 72..811 | 758..19 | 3700 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19965062..19965278 | 235..19 | 1085 | 100 | Minus |
2L | 23513712 | 2L | 19964840..19965013 | 405..232 | 870 | 100 | Minus |
2L | 23513712 | 2L | 19964424..19964581 | 695..538 | 790 | 100 | Minus |
2L | 23513712 | 2L | 19964642..19964775 | 539..406 | 670 | 100 | Minus |
2L | 23513712 | 2L | 19964244..19964281 | 758..721 | 190 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:27:47 has no hits.
BO13618.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:21 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-PA | 14..756 | 15..758 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:02 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-PA | 14..756 | 15..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:22 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 72..822 | 9..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:59 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 72..822 | 9..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:59 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19964244..19964281 | 721..758 | 100 | -> | Minus |
2L | 19964339..19964365 | 694..720 | 100 | -> | Minus |
2L | 19964426..19964581 | 538..693 | 100 | -> | Minus |
2L | 19964644..19964775 | 406..537 | 100 | -> | Minus |
2L | 19964840..19965010 | 235..405 | 100 | -> | Minus |
2L | 19965063..19965289 | 9..234 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:22 Download gff for
BO13618.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19964244..19964281 | 721..758 | 100 | -> | Minus |
arm_2L | 19964339..19964365 | 694..720 | 100 | -> | Minus |
arm_2L | 19964426..19964581 | 538..693 | 100 | -> | Minus |
arm_2L | 19964644..19964775 | 406..537 | 100 | -> | Minus |
arm_2L | 19964840..19965010 | 235..405 | 100 | -> | Minus |
arm_2L | 19965063..19965289 | 9..234 | 98 | | Minus |
BO13618.5prime Sequence
785 bp (784 high quality bases) assembled on 2006-05-08
> BO13618.5prime
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTGCAAGCTTTCTAGACC
BO13618.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-PA | 756 | CG10680-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 1272 | CG10680-RB | 92..848 | 13..769 | 3770 | 99.9 | Plus |
CG10680-RA | 1026 | CG10680-RA | 55..811 | 13..769 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19965062..19965278 | 553..769 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 19964840..19965013 | 383..556 | 870 | 100 | Plus |
2L | 23513712 | 2L | 19964424..19964581 | 93..250 | 790 | 100 | Plus |
2L | 23513712 | 2L | 19964642..19964775 | 249..382 | 670 | 100 | Plus |
2L | 23513712 | 2L | 19964227..19964281 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:49:04 has no hits.
BO13618.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:22 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-PA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:03 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-PA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:40 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 48..822 | 3..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:16 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 48..822 | 3..779 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:16 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19964220..19964281 | 3..67 | 92 | -> | Plus |
2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
2L | 19965063..19965289 | 554..779 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:40 Download gff for
BO13618.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19964220..19964281 | 3..67 | 92 | -> | Plus |
arm_2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
arm_2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
arm_2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
arm_2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
arm_2L | 19965063..19965289 | 554..779 | 98 | | Plus |
BO13618.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ632863
> BO13618.complete
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTGCAAGCTTTCTAGACCAT
BO13618.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 756 | CG10680-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG10680-RA | 756 | CG10680-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-RB | 1272 | CG10680-RB | 92..848 | 13..769 | 3770 | 99.9 | Plus |
CG10680-RA | 1026 | CG10680-RA | 55..811 | 13..769 | 3770 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19965062..19965278 | 553..769 | 1085 | 100 | Plus |
2L | 23513712 | 2L | 19964840..19965013 | 383..556 | 870 | 100 | Plus |
2L | 23513712 | 2L | 19964424..19964581 | 93..250 | 790 | 100 | Plus |
2L | 23513712 | 2L | 19964642..19964775 | 249..382 | 670 | 100 | Plus |
2L | 23513712 | 2L | 19964227..19964281 | 13..67 | 260 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:18:12 has no hits.
BO13618.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:05 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 1..756 | 17..773 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:13 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 47..821 | 3..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:20 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 64..811 | 22..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:05 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 47..821 | 3..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:10 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10680-RA | 64..811 | 22..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:10 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19964236..19964281 | 22..67 | 100 | -> | Plus |
2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
2L | 19965063..19965278 | 554..771 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:20 Download gff for
BO13618.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19964236..19964281 | 22..67 | 100 | -> | Plus |
arm_2L | 19964339..19964365 | 68..94 | 100 | -> | Plus |
arm_2L | 19964426..19964581 | 95..250 | 100 | -> | Plus |
arm_2L | 19964644..19964775 | 251..382 | 100 | -> | Plus |
arm_2L | 19964840..19965010 | 383..553 | 100 | -> | Plus |
arm_2L | 19965063..19965278 | 554..771 | 99 | | Plus |
BO13618.pep Sequence
Translation from 16 to 787
> BO13618.pep
MLPLQFVLLGCLFIAQGICHTLPDPKLRVPRETINIPTHLFKPVSPKSSN
KPISNRSSLNGGNSSALAEANNDVEFLERSSGEVEEVTDTYEEEDVPLRP
IPFQPRPFYPQIPPRSNGFPIRQPNYDNAFQTDYNVGPRGSGFDNRPFPS
SPDFRGRGIRPIPDSPFRNQNLGTFVSRPVPMPSSGSIIPLIAGGSSIPT
GRSGPLGSGGSSNNFYRSESYSYTSDGRGPPQIERDVFDSRDGFGSSYRN
FASFLDH
BO13618.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10680-PB | 251 | CG10680-PB | 1..251 | 1..251 | 1343 | 100 | Plus |
CG10680-PA | 251 | CG10680-PA | 1..251 | 1..251 | 1343 | 100 | Plus |