Clone BO13618 Report

Search the DGRC for BO13618

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG10680-RA
Protein status:BO13618.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO13618.3prime Sequence

758 bp (711 high quality bases) assembled on 2006-05-08

> BO13618.3prime
ATGGTCTAGAAAGCTTGCAAAGTTGCGATAAGATGATCCAAATCCATCCC
GCGAGTCGAACACATCCCGCTCGATTTGGGGAGGTCCTCTTCCATCCGAT
GTGTAGCTATAGGATTCGCTCCGGTAAAAGTTGTTAGAAGAGCCCCCGGA
ACCAAGGGGACCACTTCTACCAGTCGGAATACTGGAACCACCGGCGATAA
GGGGGATAATGGAACCACTGGATGGCATAGGTACCGGTCGAGATACAAAG
GTTCCTAAGTTTTGATTGCGGAATGGGGAGTCAGGAATTGGTCGAATGCC
TCTGCCACGGAAATCCGGGGAACTGGGAAAAGGTCTGTTGTCGAAGCCGC
TGCCTCTGGGACCCACATTGTAATCGGTTTGGAATGCATTGTCATAGTTG
GGTTGACGAATGGGGAAACCGTTGGATCGGGGAGGGATCTGAGGATAAAA
CGGTCGAGGTTGGAAGGGGATAGGTCGGAGTGGAACGTCCTCCTCTTCGT
AGGTGTCGGTCACCTCCTCCACTTCACCGCTAGATCTCTCTAGAAACTCG
ACATCGTTATTTGCTTCGGCCAGGGCAGAGCTGTTTCCGCCATTTAAGGA
TGATCTATTAGAAATAGGTTTGTTGCTCGATTTCGGACTCACTGGCTTGA
AGAGATGCGTGGGAATGTTGATAGTTTCACGAGGCACCCTTAGCTTGGGA
TCCGGCAGAGTGTGGCATATCCCCTGAGCGATGAACAGACAGCCCAGCAA
AACGAATT

BO13618.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-PA 756 CG10680-RA 14..753 758..19 3700 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:27:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 1272 CG10680-RB 109..848 758..19 3700 100 Minus
CG10680-RA 1026 CG10680-RA 72..811 758..19 3700 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19965062..19965278 235..19 1085 100 Minus
2L 23513712 2L 19964840..19965013 405..232 870 100 Minus
2L 23513712 2L 19964424..19964581 695..538 790 100 Minus
2L 23513712 2L 19964642..19964775 539..406 670 100 Minus
2L 23513712 2L 19964244..19964281 758..721 190 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:27:47 has no hits.

BO13618.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:21 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-PA 14..756 15..758 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:02 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-PA 14..756 15..758 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:22 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 72..822 9..758 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:03:59 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 72..822 9..758 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:03:59 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 19964244..19964281 721..758 100 -> Minus
2L 19964339..19964365 694..720 100 -> Minus
2L 19964426..19964581 538..693 100 -> Minus
2L 19964644..19964775 406..537 100 -> Minus
2L 19964840..19965010 235..405 100 -> Minus
2L 19965063..19965289 9..234 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:22 Download gff for BO13618.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19964244..19964281 721..758 100 -> Minus
arm_2L 19964339..19964365 694..720 100 -> Minus
arm_2L 19964426..19964581 538..693 100 -> Minus
arm_2L 19964644..19964775 406..537 100 -> Minus
arm_2L 19964840..19965010 235..405 100 -> Minus
arm_2L 19965063..19965289 9..234 98   Minus

BO13618.5prime Sequence

785 bp (784 high quality bases) assembled on 2006-05-08

> BO13618.5prime
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTGCAAGCTTTCTAGACC

BO13618.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-PA 756 CG10680-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:49:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 1272 CG10680-RB 92..848 13..769 3770 99.9 Plus
CG10680-RA 1026 CG10680-RA 55..811 13..769 3770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:49:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19965062..19965278 553..769 1085 100 Plus
2L 23513712 2L 19964840..19965013 383..556 870 100 Plus
2L 23513712 2L 19964424..19964581 93..250 790 100 Plus
2L 23513712 2L 19964642..19964775 249..382 670 100 Plus
2L 23513712 2L 19964227..19964281 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2015-02-11 11:49:04 has no hits.

BO13618.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:22 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:03 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-PA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:18:40 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 48..822 3..779 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:11:16 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 48..822 3..779 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:11:16 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19964220..19964281 3..67 92 -> Plus
2L 19964339..19964365 68..94 100 -> Plus
2L 19964426..19964581 95..250 100 -> Plus
2L 19964644..19964775 251..382 100 -> Plus
2L 19964840..19965010 383..553 100 -> Plus
2L 19965063..19965289 554..779 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:18:40 Download gff for BO13618.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19964220..19964281 3..67 92 -> Plus
arm_2L 19964339..19964365 68..94 100 -> Plus
arm_2L 19964426..19964581 95..250 100 -> Plus
arm_2L 19964644..19964775 251..382 100 -> Plus
arm_2L 19964840..19965010 383..553 100 -> Plus
arm_2L 19965063..19965289 554..779 98   Plus

BO13618.complete Sequence

787 bp assembled on 2006-10-11

GenBank Submission: FJ632863

> BO13618.complete
GAAGTTATCAGTCGACATGTTGCCGCTCCAATTCGTTTTGCTGGGCTGTC
TGTTCATCGCTCAGGGGATATGCCACACTCTGCCGGATCCCAAGCTAAGG
GTGCCTCGTGAAACTATCAACATTCCCACGCATCTCTTCAAGCCAGTGAG
TCCGAAATCGAGCAACAAACCTATTTCTAATAGATCATCCTTAAATGGCG
GAAACAGCTCTGCCCTGGCCGAAGCAAATAACGATGTCGAGTTTCTAGAG
AGATCTAGCGGTGAAGTGGAGGAGGTGACCGACACCTACGAAGAGGAGGA
CGTTCCACTCCGACCTATCCCCTTCCAACCTCGACCGTTTTATCCTCAGA
TCCCTCCCCGATCCAACGGTTTCCCCATTCGTCAACCCAACTATGACAAT
GCATTCCAAACCGATTACAATGTGGGTCCCAGAGGCAGCGGCTTCGACAA
CAGACCTTTTCCCAGTTCCCCGGATTTCCGTGGCAGAGGCATTCGACCAA
TTCCTGACTCCCCATTCCGCAATCAAAACTTAGGAACCTTTGTATCTCGA
CCGGTACCTATGCCATCCAGTGGTTCCATTATCCCCCTTATCGCCGGTGG
TTCCAGTATTCCGACTGGTAGAAGTGGTCCCCTTGGTTCCGGGGGCTCTT
CTAACAACTTTTACCGGAGCGAATCCTATAGCTACACATCGGATGGAAGA
GGACCTCCCCAAATCGAGCGGGATGTGTTCGACTCGCGGGATGGATTTGG
ATCATCTTATCGCAACTTTGCAAGCTTTCTAGACCAT

BO13618.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 756 CG10680-PB 1..753 17..769 3765 100 Plus
CG10680-RA 756 CG10680-PA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-RB 1272 CG10680-RB 92..848 13..769 3770 99.9 Plus
CG10680-RA 1026 CG10680-RA 55..811 13..769 3770 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19965062..19965278 553..769 1085 100 Plus
2L 23513712 2L 19964840..19965013 383..556 870 100 Plus
2L 23513712 2L 19964424..19964581 93..250 790 100 Plus
2L 23513712 2L 19964642..19964775 249..382 670 100 Plus
2L 23513712 2L 19964227..19964281 13..67 260 98.2 Plus
Blast to na_te.dros performed on 2014-11-27 14:18:12 has no hits.

BO13618.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:05 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 1..756 17..773 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:13 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 47..821 3..779 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:20 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 64..811 22..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:05 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 47..821 3..779 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:10 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
CG10680-RA 64..811 22..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:10 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19964236..19964281 22..67 100 -> Plus
2L 19964339..19964365 68..94 100 -> Plus
2L 19964426..19964581 95..250 100 -> Plus
2L 19964644..19964775 251..382 100 -> Plus
2L 19964840..19965010 383..553 100 -> Plus
2L 19965063..19965278 554..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:20 Download gff for BO13618.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19964236..19964281 22..67 100 -> Plus
arm_2L 19964339..19964365 68..94 100 -> Plus
arm_2L 19964426..19964581 95..250 100 -> Plus
arm_2L 19964644..19964775 251..382 100 -> Plus
arm_2L 19964840..19965010 383..553 100 -> Plus
arm_2L 19965063..19965278 554..771 99   Plus

BO13618.pep Sequence

Translation from 16 to 787

> BO13618.pep
MLPLQFVLLGCLFIAQGICHTLPDPKLRVPRETINIPTHLFKPVSPKSSN
KPISNRSSLNGGNSSALAEANNDVEFLERSSGEVEEVTDTYEEEDVPLRP
IPFQPRPFYPQIPPRSNGFPIRQPNYDNAFQTDYNVGPRGSGFDNRPFPS
SPDFRGRGIRPIPDSPFRNQNLGTFVSRPVPMPSSGSIIPLIAGGSSIPT
GRSGPLGSGGSSNNFYRSESYSYTSDGRGPPQIERDVFDSRDGFGSSYRN
FASFLDH

BO13618.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10680-PB 251 CG10680-PB 1..251 1..251 1343 100 Plus
CG10680-PA 251 CG10680-PA 1..251 1..251 1343 100 Plus