Clone Sequence Records
BO13619.3prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13619.3prime
ATGGTCTAGAAAGCTTGCAACATCGACAACCATTTTCTTGTGAATATCGG
TATTGCCCACCACCGAGCAGAATTCATCGAACGATATCTTGCCATCCTCG
TCCTTGTCCGCAAAGCAAATGGTCTTGTCCACGATCTGCTGCAGCTGTGT
GTCCTTCAGATTGTTGCCCACCATCATCTTGAGCACCTGGAAGAGTTCCC
CGTTCGAGATGTAGCCATCATTGTCCATATCATAGATGCGGAAGGCGAAT
CGCAGCTTGGACAGCTTATCGCCGCGCACGCTAAACTGCGACACTCCCTG
GATAAACTCCTTGAAGTCCACCTCCCCGTTTCCATCCGCATCGAAGATAT
CGATAACCCGCTGCACCAGCGGATTCTGCTGCAATTCCGGCAGCGACATG
AACTCATCTATGCTCAGCGCACCCGAGTTGTCCAGATCCAGCTTGCGGAA
TCGCTTGCCCAGCCTACGGATCTCGTCCGCATCGAAGTTGGAACACATGT
CCATGGGCAGGGAGGTCTCGTTACCCATGTCGACTGATAACT
BO13619.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4209-PA | 513 | CanB-RA | 1..510 | 528..19 | 2550 | 100 | Minus |
CG11217-PA | 513 | CanB2-RA | 19..251 | 510..278 | 415 | 87.1 | Minus |
CG11217-PA | 513 | CanB2-RA | 418..509 | 111..20 | 185 | 88 | Minus |
CG11217-PA | 513 | CanB2-RA | 349..407 | 180..122 | 170 | 91.5 | Minus |
CG11217-PA | 513 | CanB2-RA | 256..320 | 273..209 | 150 | 89.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 1148 | CG4209-RB | 103..613 | 529..19 | 2555 | 100 | Minus |
CanB-RA | 1214 | CG4209-RA | 169..679 | 529..19 | 2555 | 100 | Minus |
CanB2-RB | 2061 | CG11217-RB | 257..765 | 528..20 | 1405 | 85.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5333404..5333914 | 529..19 | 2555 | 100 | Minus |
2R | 25286936 | 2R | 7787234..7787533 | 485..186 | 825 | 85 | Minus |
2R | 25286936 | 2R | 7787597..7787757 | 180..20 | 490 | 87 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:09:11 has no hits.
BO13619.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:23 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:05 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4209-PA | 1..513 | 18..528 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:05 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..685 | 11..535 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:27 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..685 | 11..535 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:27 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5333397..5333920 | 11..535 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:05 Download gff for
BO13619.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5227430..5227953 | 11..535 | 98 | | Minus |
BO13619.5prime Sequence
542 bp (541 high quality bases) assembled on 2006-05-08
> BO13619.5prime
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTGCAAGCTTTCTAGACC
BO13619.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4209-PA | 513 | CanB-RA | 1..510 | 17..526 | 2550 | 100 | Plus |
CG11217-PA | 513 | CanB2-RA | 19..251 | 35..267 | 415 | 87.1 | Plus |
CG11217-PA | 513 | CanB2-RA | 418..509 | 434..525 | 185 | 88 | Plus |
CG11217-PA | 513 | CanB2-RA | 349..407 | 365..423 | 170 | 91.5 | Plus |
CG11217-PA | 513 | CanB2-RA | 256..320 | 272..336 | 150 | 89.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 1148 | CG4209-RB | 103..613 | 16..526 | 2555 | 100 | Plus |
CanB-RA | 1214 | CG4209-RA | 169..679 | 16..526 | 2555 | 100 | Plus |
CanB2-RB | 2061 | CG11217-RB | 257..765 | 17..525 | 1405 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5333404..5333914 | 16..526 | 2555 | 100 | Plus |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 825 | 85 | Plus |
2R | 25286936 | 2R | 7787597..7787757 | 365..525 | 490 | 87 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:22:15 has no hits.
BO13619.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:24 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:06 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4209-PA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:58 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..685 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:25 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 162..685 | 10..534 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:25 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5333397..5333920 | 10..534 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:58 Download gff for
BO13619.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5227430..5227953 | 10..534 | 98 | | Plus |
BO13619.complete Sequence
544 bp assembled on 2006-10-11
GenBank Submission: FJ632864
> BO13619.complete
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTGCAAGCTTTCTAGACCAT
BO13619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 513 | CG4209-PB | 1..510 | 17..526 | 2550 | 100 | Plus |
CanB-RA | 513 | CG4209-PA | 1..510 | 17..526 | 2550 | 100 | Plus |
CanB2-RB | 513 | CG11217-PB | 1..509 | 17..525 | 1405 | 85.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-RB | 1148 | CG4209-RB | 103..613 | 16..526 | 2555 | 100 | Plus |
CanB-RA | 1214 | CG4209-RA | 169..679 | 16..526 | 2555 | 100 | Plus |
CanB2-RB | 2061 | CG11217-RB | 257..765 | 17..525 | 1405 | 85.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5333404..5333914 | 16..526 | 2555 | 100 | Plus |
2R | 25286936 | 2R | 7787234..7787533 | 60..359 | 825 | 85 | Plus |
2R | 25286936 | 2R | 7787597..7787757 | 365..525 | 490 | 87 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:18:51 has no hits.
BO13619.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:06 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 1..513 | 17..527 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:15 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 159..682 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:38 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 170..679 | 17..528 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:06 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 159..682 | 10..534 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:23 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CanB-RA | 170..679 | 17..528 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:23 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5333405..5333914 | 17..528 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:38 Download gff for
BO13619.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5227438..5227947 | 17..528 | 99 | | Plus |
BO13619.pep Sequence
Translation from 16 to 544
> BO13619.pep
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDVASFLDH
BO13619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CanB-PB | 170 | CG4209-PB | 1..170 | 1..170 | 878 | 100 | Plus |
CanB-PA | 170 | CG4209-PA | 1..170 | 1..170 | 878 | 100 | Plus |
CanB2-PB | 170 | CG11217-PB | 1..170 | 1..170 | 858 | 97.6 | Plus |
CanB2-PA | 170 | CG11217-PA | 1..170 | 1..170 | 858 | 97.6 | Plus |
elm-PB | 189 | CG2185-PB | 1..185 | 1..168 | 311 | 38.9 | Plus |