Clone BO13619 Report

Search the DGRC for BO13619

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:19
Vector:pDNR-Dual
Associated Gene/TranscriptCanB-RA
Protein status:BO13619.pep: validated full length
Sequenced Size:544

Clone Sequence Records

BO13619.3prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13619.3prime
ATGGTCTAGAAAGCTTGCAACATCGACAACCATTTTCTTGTGAATATCGG
TATTGCCCACCACCGAGCAGAATTCATCGAACGATATCTTGCCATCCTCG
TCCTTGTCCGCAAAGCAAATGGTCTTGTCCACGATCTGCTGCAGCTGTGT
GTCCTTCAGATTGTTGCCCACCATCATCTTGAGCACCTGGAAGAGTTCCC
CGTTCGAGATGTAGCCATCATTGTCCATATCATAGATGCGGAAGGCGAAT
CGCAGCTTGGACAGCTTATCGCCGCGCACGCTAAACTGCGACACTCCCTG
GATAAACTCCTTGAAGTCCACCTCCCCGTTTCCATCCGCATCGAAGATAT
CGATAACCCGCTGCACCAGCGGATTCTGCTGCAATTCCGGCAGCGACATG
AACTCATCTATGCTCAGCGCACCCGAGTTGTCCAGATCCAGCTTGCGGAA
TCGCTTGCCCAGCCTACGGATCTCGTCCGCATCGAAGTTGGAACACATGT
CCATGGGCAGGGAGGTCTCGTTACCCATGTCGACTGATAACT

BO13619.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4209-PA 513 CanB-RA 1..510 528..19 2550 100 Minus
CG11217-PA 513 CanB2-RA 19..251 510..278 415 87.1 Minus
CG11217-PA 513 CanB2-RA 418..509 111..20 185 88 Minus
CG11217-PA 513 CanB2-RA 349..407 180..122 170 91.5 Minus
CG11217-PA 513 CanB2-RA 256..320 273..209 150 89.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 1148 CG4209-RB 103..613 529..19 2555 100 Minus
CanB-RA 1214 CG4209-RA 169..679 529..19 2555 100 Minus
CanB2-RB 2061 CG11217-RB 257..765 528..20 1405 85.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:09:07
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333404..5333914 529..19 2555 100 Minus
2R 25286936 2R 7787234..7787533 485..186 825 85 Minus
2R 25286936 2R 7787597..7787757 180..20 490 87 Minus
Blast to na_te.dros performed on 2015-02-03 07:09:11 has no hits.

BO13619.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:23 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:05 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4209-PA 1..513 18..528 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:05 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..685 11..535 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:27 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..685 11..535 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:27 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
X 5333397..5333920 11..535 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:05 Download gff for BO13619.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5227430..5227953 11..535 98   Minus

BO13619.5prime Sequence

542 bp (541 high quality bases) assembled on 2006-05-08

> BO13619.5prime
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTGCAAGCTTTCTAGACC

BO13619.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4209-PA 513 CanB-RA 1..510 17..526 2550 100 Plus
CG11217-PA 513 CanB2-RA 19..251 35..267 415 87.1 Plus
CG11217-PA 513 CanB2-RA 418..509 434..525 185 88 Plus
CG11217-PA 513 CanB2-RA 349..407 365..423 170 91.5 Plus
CG11217-PA 513 CanB2-RA 256..320 272..336 150 89.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 1148 CG4209-RB 103..613 16..526 2555 100 Plus
CanB-RA 1214 CG4209-RA 169..679 16..526 2555 100 Plus
CanB2-RB 2061 CG11217-RB 257..765 17..525 1405 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333404..5333914 16..526 2555 100 Plus
2R 25286936 2R 7787234..7787533 60..359 825 85 Plus
2R 25286936 2R 7787597..7787757 365..525 490 87 Plus
Blast to na_te.dros performed on 2015-02-13 08:22:15 has no hits.

BO13619.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:24 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:06 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4209-PA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:36:58 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..685 10..534 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:10:25 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 162..685 10..534 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:10:25 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
X 5333397..5333920 10..534 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:36:58 Download gff for BO13619.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 5227430..5227953 10..534 98   Plus

BO13619.complete Sequence

544 bp assembled on 2006-10-11

GenBank Submission: FJ632864

> BO13619.complete
GAAGTTATCAGTCGACATGGGTAACGAGACCTCCCTGCCCATGGACATGT
GTTCCAACTTCGATGCGGACGAGATCCGTAGGCTGGGCAAGCGATTCCGC
AAGCTGGATCTGGACAACTCGGGTGCGCTGAGCATAGATGAGTTCATGTC
GCTGCCGGAATTGCAGCAGAATCCGCTGGTGCAGCGGGTTATCGATATCT
TCGATGCGGATGGAAACGGGGAGGTGGACTTCAAGGAGTTTATCCAGGGA
GTGTCGCAGTTTAGCGTGCGCGGCGATAAGCTGTCCAAGCTGCGATTCGC
CTTCCGCATCTATGATATGGACAATGATGGCTACATCTCGAACGGGGAAC
TCTTCCAGGTGCTCAAGATGATGGTGGGCAACAATCTGAAGGACACACAG
CTGCAGCAGATCGTGGACAAGACCATTTGCTTTGCGGACAAGGACGAGGA
TGGCAAGATATCGTTCGATGAATTCTGCTCGGTGGTGGGCAATACCGATA
TTCACAAGAAAATGGTTGTCGATGTTGCAAGCTTTCTAGACCAT

BO13619.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 513 CG4209-PB 1..510 17..526 2550 100 Plus
CanB-RA 513 CG4209-PA 1..510 17..526 2550 100 Plus
CanB2-RB 513 CG11217-PB 1..509 17..525 1405 85.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-RB 1148 CG4209-RB 103..613 16..526 2555 100 Plus
CanB-RA 1214 CG4209-RA 169..679 16..526 2555 100 Plus
CanB2-RB 2061 CG11217-RB 257..765 17..525 1405 85.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:18:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 5333404..5333914 16..526 2555 100 Plus
2R 25286936 2R 7787234..7787533 60..359 825 85 Plus
2R 25286936 2R 7787597..7787757 365..525 490 87 Plus
Blast to na_te.dros performed on 2014-11-27 14:18:51 has no hits.

BO13619.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:06 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 1..513 17..527 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:15 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 159..682 10..534 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:39:38 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 170..679 17..528 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:06 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 159..682 10..534 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:08:23 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
CanB-RA 170..679 17..528 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:08:23 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
X 5333405..5333914 17..528 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:39:38 Download gff for BO13619.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 5227438..5227947 17..528 99   Plus

BO13619.pep Sequence

Translation from 16 to 544

> BO13619.pep
MGNETSLPMDMCSNFDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ
QNPLVQRVIDIFDADGNGEVDFKEFIQGVSQFSVRGDKLSKLRFAFRIYD
MDNDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTICFADKDEDGKISF
DEFCSVVGNTDIHKKMVVDVASFLDH

BO13619.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
CanB-PB 170 CG4209-PB 1..170 1..170 878 100 Plus
CanB-PA 170 CG4209-PA 1..170 1..170 878 100 Plus
CanB2-PB 170 CG11217-PB 1..170 1..170 858 97.6 Plus
CanB2-PA 170 CG11217-PA 1..170 1..170 858 97.6 Plus
elm-PB 189 CG2185-PB 1..185 1..168 311 38.9 Plus