Clone Sequence Records
BO13620.3prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO13620.3prime
ATGGTCTAGAAAGCTTGCCTTAGCCTTGTCGTCCTGCTGCTTAGCCTCCT
CCGCTTTCAGCAGCTCCGAAATGATGCCCGCCTTCTTGAGCTCCTCGATG
AGATCGCCGCTCTGGTGCATCTGCAGCAGGATGTCGCAACCGCCGACAAA
TTCGCCATTGATGAACACCTGCGGAATGGTCGGCCAGTCGGTGTAGTCCT
TGACACCCTGTCGCAGGGACTCGTTTTGCAGCACATCGTGGGCATCGTAC
TGGACACCGTGCATCCGCATAATCTGCACCACCGCATTGCTGAAGCCGCA
GCGTGGCGCCTGTGGGTTGCCCTTCATGAAGACGACCACCTTGTTGGTGC
GCACCAGCTTGTCCATTGTCGCCTTGTCCACTGCCGCGCCGGTGGCCGCA
TCCGCCGCAAGAAAGCGGGTGAGCAGGGATTGCGGTGCTGTGGTGGCGAG
AATCTGGTATCTCGGATGGCGGAGACTCTGGCAAATTCGGTTCATGTCGA
CTGATAACT
BO13620.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-PA | 480 | CG14407-RA | 1..477 | 495..19 | 2385 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-RA | 668 | CG14407-RA | 97..573 | 495..19 | 2385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:08:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14837811..14838102 | 204..495 | 1460 | 100 | Plus |
| X | 23542271 | X | 14837566..14837754 | 19..207 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 07:08:58 has no hits.
BO13620.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:25 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:08 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-PA | 1..480 | 16..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:03 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 91..581 | 11..501 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:24 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 91..581 | 11..501 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:24 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14837558..14837753 | 11..206 | 97 | <- | Plus |
| X | 14837814..14838108 | 207..501 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:03 Download gff for
BO13620.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14731591..14731786 | 11..206 | 97 | <- | Plus |
| arm_X | 14731847..14732141 | 207..501 | 99 | | Plus |
BO13620.5prime Sequence
509 bp (508 high quality bases) assembled on 2006-05-08
> BO13620.5prime
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGGCAAGCT
TTCTAGACC
BO13620.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-PA | 480 | CG14407-RA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-RA | 668 | CG14407-RA | 97..573 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14837811..14838102 | 308..17 | 1460 | 100 | Minus |
| X | 23542271 | X | 14837566..14837754 | 493..305 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 11:07:25 has no hits.
BO13620.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:25 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:09 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-PA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:53 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 91..581 | 11..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:27 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 91..581 | 11..501 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:27 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14837558..14837753 | 306..501 | 97 | <- | Minus |
| X | 14837814..14838108 | 11..305 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:53 Download gff for
BO13620.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14731591..14731786 | 306..501 | 97 | <- | Minus |
| arm_X | 14731847..14732141 | 11..305 | 99 | | Minus |
BO13620.complete Sequence
511 bp assembled on 2006-10-11
GenBank Submission: FJ632865
> BO13620.complete
GAAGTTATCAGTCGACATGAACCGAATTTGCCAGAGTCTCCGCCATCCGA
GATACCAGATTCTCGCCACCACAGCACCGCAATCCCTGCTCACCCGCTTT
CTTGCGGCGGATGCGGCCACCGGCGCGGCAGTGGACAAGGCGACAATGGA
CAAGCTGGTGCGCACCAACAAGGTGGTCGTCTTCATGAAGGGCAACCCAC
AGGCGCCACGCTGCGGCTTCAGCAATGCGGTGGTGCAGATTATGCGGATG
CACGGTGTCCAGTACGATGCCCACGATGTGCTGCAAAACGAGTCCCTGCG
ACAGGGTGTCAAGGACTACACCGACTGGCCGACCATTCCGCAGGTGTTCA
TCAATGGCGAATTTGTCGGCGGTTGCGACATCCTGCTGCAGATGCACCAG
AGCGGCGATCTCATCGAGGAGCTCAAGAAGGCGGGCATCATTTCGGAGCT
GCTGAAAGCGGAGGAGGCTAAGCAGCAGGACGACAAGGCTAAGGCAAGCT
TTCTAGACCAT
BO13620.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:26:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-RA | 480 | CG14407-PA | 1..477 | 17..493 | 2385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:26:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-RA | 668 | CG14407-RA | 97..573 | 17..493 | 2385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14837811..14838102 | 308..17 | 1460 | 100 | Minus |
| X | 23542271 | X | 14837566..14837754 | 493..305 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:26:53 has no hits.
BO13620.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:07 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 1..480 | 17..496 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:16 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 90..580 | 11..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:06 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 97..573 | 17..495 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:07 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 90..580 | 11..501 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:25:39 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14407-RA | 97..573 | 17..495 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:25:39 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14837563..14837753 | 306..495 | 98 | <- | Minus |
| X | 14837814..14838102 | 17..305 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:06 Download gff for
BO13620.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14731596..14731786 | 306..495 | 98 | <- | Minus |
| arm_X | 14731847..14732135 | 17..305 | 100 | | Minus |
BO13620.pep Sequence
Translation from 16 to 511
> BO13620.pep
MNRICQSLRHPRYQILATTAPQSLLTRFLAADAATGAAVDKATMDKLVRT
NKVVVFMKGNPQAPRCGFSNAVVQIMRMHGVQYDAHDVLQNESLRQGVKD
YTDWPTIPQVFINGEFVGGCDILLQMHQSGDLIEELKKAGIISELLKAEE
AKQQDDKAKASFLDH
BO13620.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14407-PA | 159 | CG14407-PA | 1..159 | 1..159 | 818 | 100 | Plus |
| CG6523-PA | 216 | CG6523-PA | 94..215 | 15..137 | 243 | 37.4 | Plus |
