Clone BO13621 Report

Search the DGRC for BO13621

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:21
Vector:pDNR-Dual
Associated Gene/Transcriptlevy-RA
Protein status:BO13621.pep: validated full length
Sequenced Size:361

Clone Sequence Records

BO13621.3prime Sequence

359 bp (358 high quality bases) assembled on 2006-05-08

> BO13621.3prime
ATGGTCTAGAAAGCTTGCGTGCTCGTAGCCGTCGGGCAGGGCGTTAACGT
GGGGGTTGTGGAACAGGCTCTTCTGGCCCTCACCCCAGGGGAAGCGCTTC
TCGCGGCGGCGCAGGTAGTCGTACTTGACGAACTCCTGGCGGGGCTTGTC
GTGCTCCTCCTGGTGCTTCAGGTAGGCGTTCAGCATGCACAGTCCCACGG
CGGGCACGGCCACGAAGAAGGACAGGCGCTTCCACACCTTGTAGCCACCA
GAGTGCTCGCCGGCCACGGCGGCGGTGCCGGACATATTCCGGGCGGCAGA
AGCGCCGAATTGGCGGCGAATTGCGTGGTTTAGAATAGCGGACATGTCGA
CTGATAACT

BO13621.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG17280-PA 330 CG17280-RA 1..327 345..19 1635 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:22:17
Subject Length Description Subject Range Query Range Score Percent Strand
levy-RB 490 CG17280-RB 52..378 345..19 1635 100 Minus
levy-RA 593 CG17280-RA 52..378 345..19 1635 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23548537..23548767 249..19 1155 100 Minus
2R 25286936 2R 23548290..23548388 345..247 495 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:22:14 has no hits.

BO13621.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:26 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17280-PA 1..330 18..345 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:10 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17280-PA 1..330 18..345 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:40 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 19..345 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:25 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 19..345 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:25 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23548290..23548386 249..345 100 -> Minus
2R 23548538..23548767 19..248 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:40 Download gff for BO13621.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19435813..19435909 249..345 100 -> Minus
arm_2R 19436061..19436290 19..248 100   Minus

BO13621.5prime Sequence

359 bp (358 high quality bases) assembled on 2006-05-08

> BO13621.5prime
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACGCAAGCT
TTCTAGACC

BO13621.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG17280-PA 330 CG17280-RA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
levy-RB 490 CG17280-RB 52..378 17..343 1635 100 Plus
levy-RA 593 CG17280-RA 52..378 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23548537..23548767 113..343 1155 100 Plus
2R 25286936 2R 23548290..23548388 17..115 495 100 Plus
Blast to na_te.dros performed on 2015-02-11 23:04:25 has no hits.

BO13621.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:27 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17280-PA 1..330 17..344 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:11 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17280-PA 1..330 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:29 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 17..343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:45 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 17..343 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:45 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23548538..23548767 114..343 100   Plus
2R 23548290..23548386 17..113 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:29 Download gff for BO13621.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19436061..19436290 114..343 100   Plus
arm_2R 19435813..19435909 17..113 100 -> Plus

BO13621.complete Sequence

361 bp assembled on 2006-10-11

GenBank Submission: FJ632866

> BO13621.complete
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACGCAAGCT
TTCTAGACCAT

BO13621.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
levy-RB 330 CG17280-PB 1..327 17..343 1635 100 Plus
levy-RA 330 CG17280-PA 1..327 17..343 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
levy-RB 490 CG17280-RB 52..378 17..343 1635 100 Plus
levy-RA 593 CG17280-RA 52..378 17..343 1635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23548537..23548767 113..343 1155 100 Plus
2R 25286936 2R 23548290..23548388 17..115 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:10:19 has no hits.

BO13621.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:08 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
levy-RA 1..330 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:18 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
levy-RA 51..377 17..343 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:14 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 17..345 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:08 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
levy-RA 51..377 17..343 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:24 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
levy-RA 52..378 17..345 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:24 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23548290..23548386 17..113 100 -> Plus
2R 23548538..23548767 114..345 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:14 Download gff for BO13621.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19435813..19435909 17..113 100 -> Plus
arm_2R 19436061..19436290 114..345 99   Plus

BO13621.pep Sequence

Translation from 16 to 361

> BO13621.pep
MSAILNHAIRRQFGASAARNMSGTAAVAGEHSGGYKVWKRLSFFVAVPAV
GLCMLNAYLKHQEEHDKPRQEFVKYDYLRRREKRFPWGEGQKSLFHNPHV
NALPDGYEHASFLDH

BO13621.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
levy-PB 109 CG17280-PB 1..109 1..109 590 100 Plus
levy-PA 109 CG17280-PA 1..109 1..109 590 100 Plus
CG30093-PA 94 CG30093-PA 19..87 37..108 234 56.9 Plus
CG14077-PB 289 CG14077-PB 153..229 27..108 141 36.1 Plus
CG14077-PC 289 CG14077-PC 153..229 27..108 141 36.1 Plus