Clone Sequence Records
BO13621.3prime Sequence
359 bp (358 high quality bases) assembled on 2006-05-08
> BO13621.3prime
ATGGTCTAGAAAGCTTGCGTGCTCGTAGCCGTCGGGCAGGGCGTTAACGT
GGGGGTTGTGGAACAGGCTCTTCTGGCCCTCACCCCAGGGGAAGCGCTTC
TCGCGGCGGCGCAGGTAGTCGTACTTGACGAACTCCTGGCGGGGCTTGTC
GTGCTCCTCCTGGTGCTTCAGGTAGGCGTTCAGCATGCACAGTCCCACGG
CGGGCACGGCCACGAAGAAGGACAGGCGCTTCCACACCTTGTAGCCACCA
GAGTGCTCGCCGGCCACGGCGGCGGTGCCGGACATATTCCGGGCGGCAGA
AGCGCCGAATTGGCGGCGAATTGCGTGGTTTAGAATAGCGGACATGTCGA
CTGATAACT
BO13621.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17280-PA | 330 | CG17280-RA | 1..327 | 345..19 | 1635 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..378 | 345..19 | 1635 | 100 | Minus |
levy-RA | 593 | CG17280-RA | 52..378 | 345..19 | 1635 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:22:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548767 | 249..19 | 1155 | 100 | Minus |
2R | 25286936 | 2R | 23548290..23548388 | 345..247 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:22:14 has no hits.
BO13621.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:26 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 18..345 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:10 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 18..345 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:40 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 19..345 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:25 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 19..345 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:25 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548290..23548386 | 249..345 | 100 | -> | Minus |
2R | 23548538..23548767 | 19..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:40 Download gff for
BO13621.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19435813..19435909 | 249..345 | 100 | -> | Minus |
arm_2R | 19436061..19436290 | 19..248 | 100 | | Minus |
BO13621.5prime Sequence
359 bp (358 high quality bases) assembled on 2006-05-08
> BO13621.5prime
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACGCAAGCT
TTCTAGACC
BO13621.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17280-PA | 330 | CG17280-RA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..378 | 17..343 | 1635 | 100 | Plus |
levy-RA | 593 | CG17280-RA | 52..378 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:04:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548767 | 113..343 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 23548290..23548388 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:04:25 has no hits.
BO13621.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:27 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:11 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17280-PA | 1..330 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:40:29 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:53:45 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 17..343 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:53:45 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548538..23548767 | 114..343 | 100 | | Plus |
2R | 23548290..23548386 | 17..113 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:40:29 Download gff for
BO13621.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19436061..19436290 | 114..343 | 100 | | Plus |
arm_2R | 19435813..19435909 | 17..113 | 100 | -> | Plus |
BO13621.complete Sequence
361 bp assembled on 2006-10-11
GenBank Submission: FJ632866
> BO13621.complete
GAAGTTATCAGTCGACATGTCCGCTATTCTAAACCACGCAATTCGCCGCC
AATTCGGCGCTTCTGCCGCCCGGAATATGTCCGGCACCGCCGCCGTGGCC
GGCGAGCACTCTGGTGGCTACAAGGTGTGGAAGCGCCTGTCCTTCTTCGT
GGCCGTGCCCGCCGTGGGACTGTGCATGCTGAACGCCTACCTGAAGCACC
AGGAGGAGCACGACAAGCCCCGCCAGGAGTTCGTCAAGTACGACTACCTG
CGCCGCCGCGAGAAGCGCTTCCCCTGGGGTGAGGGCCAGAAGAGCCTGTT
CCACAACCCCCACGTTAACGCCCTGCCCGACGGCTACGAGCACGCAAGCT
TTCTAGACCAT
BO13621.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 330 | CG17280-PB | 1..327 | 17..343 | 1635 | 100 | Plus |
levy-RA | 330 | CG17280-PA | 1..327 | 17..343 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-RB | 490 | CG17280-RB | 52..378 | 17..343 | 1635 | 100 | Plus |
levy-RA | 593 | CG17280-RA | 52..378 | 17..343 | 1635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:10:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23548537..23548767 | 113..343 | 1155 | 100 | Plus |
2R | 25286936 | 2R | 23548290..23548388 | 17..115 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:10:19 has no hits.
BO13621.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:08 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 1..330 | 17..344 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:18 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 51..377 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:19:14 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 17..345 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:08 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 51..377 | 17..343 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:24 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
levy-RA | 52..378 | 17..345 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:24 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23548290..23548386 | 17..113 | 100 | -> | Plus |
2R | 23548538..23548767 | 114..345 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:19:14 Download gff for
BO13621.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19435813..19435909 | 17..113 | 100 | -> | Plus |
arm_2R | 19436061..19436290 | 114..345 | 99 | | Plus |
BO13621.pep Sequence
Translation from 16 to 361
> BO13621.pep
MSAILNHAIRRQFGASAARNMSGTAAVAGEHSGGYKVWKRLSFFVAVPAV
GLCMLNAYLKHQEEHDKPRQEFVKYDYLRRREKRFPWGEGQKSLFHNPHV
NALPDGYEHASFLDH
BO13621.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
levy-PB | 109 | CG17280-PB | 1..109 | 1..109 | 590 | 100 | Plus |
levy-PA | 109 | CG17280-PA | 1..109 | 1..109 | 590 | 100 | Plus |
CG30093-PA | 94 | CG30093-PA | 19..87 | 37..108 | 234 | 56.9 | Plus |
CG14077-PB | 289 | CG14077-PB | 153..229 | 27..108 | 141 | 36.1 | Plus |
CG14077-PC | 289 | CG14077-PC | 153..229 | 27..108 | 141 | 36.1 | Plus |