Clone Sequence Records
BO13622.3prime Sequence
782 bp (707 high quality bases) assembled on 2006-05-08
> BO13622.3prime
ATGGTCTAGAAAGCTTGCTGTCTTGTTCAGGGCCACCAAAAGAAAGATTA
GCCACTGGTGTAGACTAGTGTACCCGTGACCCAGTCTGTGGGGCCTAGCA
GCAGTCGACTTTATGGCGGAGGCAGAATATTCCCCGCTCAGGACGTGCAA
CTGCATAGAAGCTGCCGCACTGTTTTCCGGCTCACACGTGTAGTTGCCGG
AGTGAATCTTGCGCACCAGAGGAATGACCAGGGAACCAATCGTGTTCCGA
TTGTGCTCGGTGCTGCCGAAGATATTCCGGTCGATTTGCGTGTACCATCC
GCTCTGGGCGCCGCTGGCCTCGTTTTCGGCAGTCACTTGTTGGTCGCCAC
GGTACCAGAAGATATACTTGGGGGCCTCCAGGGTGCCACGTACGATGCAG
TGCAGCTCCACCCTGCTGCCGGCCTTCACAAAGCGCTGCCGATCGCCGAT
TAGCTCGGTTCGGGGTGTTATCACAAACAGCTGCACCTTGGCGCTCATTT
TGGGCTCCGTTGCCAGCTGGCACTCGTACCAGCCGGCGTCCTCCAGATTC
ACATACTTGATTTGCAGCGTCCAGCTGAGGCTGCTGCTGTTGCCCCTCTC
CTGACCCCCAGGAACAGCGTGGGCGAAGGAGTTGCCCAGGGCAGCGACGG
GCGTCGCAGTTGTGGACAGGGCCCCTCCGGATACAAGTGTCGTCAAGGTG
GTCGACTGGAACAGCGATGCGAACCGGGCATCGTTGATAAAGGTTGTGTG
ATCCACCGCAATGATATGTTCATCCCGCAACC
BO13622.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12591-PB | 1332 | dpr16-RB | 566..1329 | 782..19 | 3795 | 99.8 | Minus |
CG12591-PA | 960 | dpr16-RA | 194..957 | 782..19 | 3795 | 99.8 | Minus |
CG31361-PB | 1527 | dpr17-RB | 1087..1145 | 435..377 | 170 | 91.5 | Minus |
CG31361-PA | 1995 | dpr17-RA | 1555..1613 | 435..377 | 170 | 91.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:36:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 2810 | CG12591-RC | 1489..2252 | 782..19 | 3805 | 99.9 | Minus |
dpr16-RB | 1968 | CG12591-RB | 647..1410 | 782..19 | 3805 | 99.9 | Minus |
dpr17-RE | 2663 | CG31361-RE | 1647..1875 | 574..346 | 335 | 77.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:36:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5166117..5166431 | 782..468 | 1560 | 99.7 | Minus |
3R | 32079331 | 3R | 5166863..5167089 | 467..241 | 1135 | 100 | Minus |
3R | 32079331 | 3R | 5169447..5169563 | 135..19 | 585 | 100 | Minus |
3R | 32079331 | 3R | 5167159..5167266 | 241..134 | 540 | 100 | Minus |
3R | 32079331 | 3R | 12110323..12110412 | 435..346 | 255 | 85.6 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:36:24 has no hits.
BO13622.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:28 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-PA | 194..960 | 16..782 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:13 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12591-PA | 194..960 | 16..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:56 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 628..1391 | 19..782 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:41 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 647..1410 | 19..782 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:41 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5166117..5166431 | 468..782 | 99 | -> | Minus |
3R | 5166863..5167089 | 241..467 | 100 | -> | Minus |
3R | 5167160..5167265 | 135..240 | 100 | -> | Minus |
3R | 5169448..5169565 | 18..134 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:56 Download gff for
BO13622.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 995170..995287 | 18..134 | 99 | -> | Minus |
arm_3R | 991839..992153 | 468..782 | 99 | -> | Minus |
arm_3R | 992585..992811 | 241..467 | 100 | -> | Minus |
arm_3R | 992882..992987 | 135..240 | 100 | -> | Minus |
BO13622.5prime Sequence
925 bp (850 high quality bases) assembled on 2006-05-08
> BO13622.5prime
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAACCGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACT
BO13622.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12591-PA | 960 | dpr16-RA | 1..909 | 17..925 | 4495 | 99.7 | Plus |
CG12591-PB | 1332 | dpr16-RB | 527..1281 | 171..925 | 3725 | 99.7 | Plus |
CG31361-PB | 1527 | dpr17-RB | 1087..1145 | 557..615 | 170 | 91.5 | Plus |
CG31361-PA | 1995 | dpr17-RA | 1555..1613 | 557..615 | 170 | 91.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 2810 | CG12591-RC | 1450..2204 | 171..925 | 3745 | 99.7 | Plus |
dpr16-RB | 1968 | CG12591-RB | 608..1362 | 171..925 | 3745 | 99.7 | Plus |
dpr17-RE | 2663 | CG31361-RE | 1647..1875 | 418..646 | 335 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5165924..5166431 | 17..524 | 2540 | 100 | Plus |
3R | 32079331 | 3R | 5166863..5167089 | 525..751 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 5167159..5167262 | 751..854 | 520 | 100 | Plus |
3R | 32079331 | 3R | 5169448..5169515 | 858..925 | 340 | 100 | Plus |
3R | 32079331 | 3R | 12110323..12110412 | 557..646 | 255 | 85.6 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:27:43 has no hits.
BO13622.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:29 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:14 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12591-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:40 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1538..2449 | 11..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:25 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 600..1362 | 163..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:25 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5167160..5167265 | 752..857 | 98 | -> | Plus |
3R | 5169448..5169515 | 858..925 | 100 | | Plus |
3R | 5165921..5166431 | 11..524 | 99 | -> | Plus |
3R | 5166863..5167089 | 525..751 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:40 Download gff for
BO13622.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 991643..992153 | 11..524 | 99 | -> | Plus |
arm_3R | 992585..992811 | 525..751 | 100 | -> | Plus |
arm_3R | 992882..992987 | 752..857 | 98 | -> | Plus |
arm_3R | 995170..995237 | 858..925 | 100 | | Plus |
BO13622.complete Sequence
991 bp assembled on 2006-10-11
GenBank Submission: FJ632867
> BO13622.complete
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAGCGGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACTAGTCTACACCAGTGGCTAATCTTTC
TTTTGGTGGCCCTGAACAAGACAGCAAGCTTTCTAGACCAT
BO13622.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 1467 | CG12591-PC | 662..1464 | 171..973 | 4015 | 100 | Plus |
dpr16-RB | 1332 | CG12591-PB | 527..1329 | 171..973 | 4015 | 100 | Plus |
dpr17-RE | 1527 | CG31361-PE | 948..1176 | 418..646 | 335 | 76.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-RC | 2810 | CG12591-RC | 1450..2252 | 171..973 | 4015 | 100 | Plus |
dpr16-RB | 1968 | CG12591-RB | 608..1410 | 171..973 | 4015 | 100 | Plus |
dpr17-RE | 2663 | CG31361-RE | 1647..1875 | 418..646 | 335 | 76.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5165924..5166431 | 17..524 | 2540 | 100 | Plus |
3R | 32079331 | 3R | 5166863..5167089 | 525..751 | 1135 | 100 | Plus |
3R | 32079331 | 3R | 5169447..5169563 | 857..973 | 585 | 100 | Plus |
3R | 32079331 | 3R | 5167159..5167266 | 751..858 | 540 | 100 | Plus |
3R | 32079331 | 3R | 12110323..12110412 | 557..646 | 255 | 85.6 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:04:18 has no hits.
BO13622.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:51 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1..960 | 17..976 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:52 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1538..2497 | 11..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:34 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1541..2497 | 17..975 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:51 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RA | 1538..2497 | 11..973 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:06 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
dpr16-RB | 600..1410 | 163..975 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:06 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5165924..5166431 | 17..524 | 100 | -> | Plus |
3R | 5166863..5167089 | 525..751 | 100 | -> | Plus |
3R | 5167160..5167265 | 752..857 | 100 | -> | Plus |
3R | 5169448..5169563 | 858..975 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:34 Download gff for
BO13622.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 991646..992153 | 17..524 | 100 | -> | Plus |
arm_3R | 992585..992811 | 525..751 | 100 | -> | Plus |
arm_3R | 992882..992987 | 752..857 | 100 | -> | Plus |
arm_3R | 995170..995285 | 858..975 | 98 | | Plus |
BO13622.pep Sequence
Translation from 16 to 991
> BO13622.pep
MGFLSHTIVNLVGDAKCRIMNELIGEGASLLPNSFVHYKQHTNNIHDNSH
LQLNQHSGKPLSWVRLRDEHIIAVDHTTFINDARFASLLQSTTLTTLVSG
GALSTTATPVAALGNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGWY
ECQLATEPKMSAKVQLFVITPRTELIGDRQRFVKAGSRVELHCIVRGTLE
APKYIFWYRGDQQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLV
IPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSASAIKSTAARPHRLGH
GYTSLHQWLIFLLVALNKTASFLDH
BO13622.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
dpr16-PB | 443 | CG12591-PB | 176..443 | 52..319 | 1390 | 99.6 | Plus |
dpr16-PC | 488 | CG12591-PC | 221..488 | 52..319 | 1390 | 99.6 | Plus |
dpr17-PE | 508 | CG31361-PE | 243..477 | 25..299 | 675 | 49.8 | Plus |
dpr17-PC | 508 | CG31361-PC | 243..477 | 25..299 | 675 | 49.8 | Plus |
dpr17-PB | 508 | CG31361-PB | 243..477 | 25..299 | 675 | 49.8 | Plus |