Clone BO13622 Report

Search the DGRC for BO13622

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:22
Vector:pDNR-Dual
Associated Gene/Transcriptdpr16-RA
Protein status:BO13622.pep: validated full length
Sequenced Size:991

Clone Sequence Records

BO13622.3prime Sequence

782 bp (707 high quality bases) assembled on 2006-05-08

> BO13622.3prime
ATGGTCTAGAAAGCTTGCTGTCTTGTTCAGGGCCACCAAAAGAAAGATTA
GCCACTGGTGTAGACTAGTGTACCCGTGACCCAGTCTGTGGGGCCTAGCA
GCAGTCGACTTTATGGCGGAGGCAGAATATTCCCCGCTCAGGACGTGCAA
CTGCATAGAAGCTGCCGCACTGTTTTCCGGCTCACACGTGTAGTTGCCGG
AGTGAATCTTGCGCACCAGAGGAATGACCAGGGAACCAATCGTGTTCCGA
TTGTGCTCGGTGCTGCCGAAGATATTCCGGTCGATTTGCGTGTACCATCC
GCTCTGGGCGCCGCTGGCCTCGTTTTCGGCAGTCACTTGTTGGTCGCCAC
GGTACCAGAAGATATACTTGGGGGCCTCCAGGGTGCCACGTACGATGCAG
TGCAGCTCCACCCTGCTGCCGGCCTTCACAAAGCGCTGCCGATCGCCGAT
TAGCTCGGTTCGGGGTGTTATCACAAACAGCTGCACCTTGGCGCTCATTT
TGGGCTCCGTTGCCAGCTGGCACTCGTACCAGCCGGCGTCCTCCAGATTC
ACATACTTGATTTGCAGCGTCCAGCTGAGGCTGCTGCTGTTGCCCCTCTC
CTGACCCCCAGGAACAGCGTGGGCGAAGGAGTTGCCCAGGGCAGCGACGG
GCGTCGCAGTTGTGGACAGGGCCCCTCCGGATACAAGTGTCGTCAAGGTG
GTCGACTGGAACAGCGATGCGAACCGGGCATCGTTGATAAAGGTTGTGTG
ATCCACCGCAATGATATGTTCATCCCGCAACC

BO13622.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG12591-PB 1332 dpr16-RB 566..1329 782..19 3795 99.8 Minus
CG12591-PA 960 dpr16-RA 194..957 782..19 3795 99.8 Minus
CG31361-PB 1527 dpr17-RB 1087..1145 435..377 170 91.5 Minus
CG31361-PA 1995 dpr17-RA 1555..1613 435..377 170 91.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 2810 CG12591-RC 1489..2252 782..19 3805 99.9 Minus
dpr16-RB 1968 CG12591-RB 647..1410 782..19 3805 99.9 Minus
dpr17-RE 2663 CG31361-RE 1647..1875 574..346 335 77.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:36:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5166117..5166431 782..468 1560 99.7 Minus
3R 32079331 3R 5166863..5167089 467..241 1135 100 Minus
3R 32079331 3R 5169447..5169563 135..19 585 100 Minus
3R 32079331 3R 5167159..5167266 241..134 540 100 Minus
3R 32079331 3R 12110323..12110412 435..346 255 85.6 Minus
Blast to na_te.dros performed on 2015-02-08 12:36:24 has no hits.

BO13622.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:28 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-PA 194..960 16..782 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:13 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12591-PA 194..960 16..782 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:56 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 628..1391 19..782 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:41 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 647..1410 19..782 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:41 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5166117..5166431 468..782 99 -> Minus
3R 5166863..5167089 241..467 100 -> Minus
3R 5167160..5167265 135..240 100 -> Minus
3R 5169448..5169565 18..134 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:56 Download gff for BO13622.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 995170..995287 18..134 99 -> Minus
arm_3R 991839..992153 468..782 99 -> Minus
arm_3R 992585..992811 241..467 100 -> Minus
arm_3R 992882..992987 135..240 100 -> Minus

BO13622.5prime Sequence

925 bp (850 high quality bases) assembled on 2006-05-08

> BO13622.5prime
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAACCGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACT

BO13622.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG12591-PA 960 dpr16-RA 1..909 17..925 4495 99.7 Plus
CG12591-PB 1332 dpr16-RB 527..1281 171..925 3725 99.7 Plus
CG31361-PB 1527 dpr17-RB 1087..1145 557..615 170 91.5 Plus
CG31361-PA 1995 dpr17-RA 1555..1613 557..615 170 91.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:43
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 2810 CG12591-RC 1450..2204 171..925 3745 99.7 Plus
dpr16-RB 1968 CG12591-RB 608..1362 171..925 3745 99.7 Plus
dpr17-RE 2663 CG31361-RE 1647..1875 418..646 335 77.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5165924..5166431 17..524 2540 100 Plus
3R 32079331 3R 5166863..5167089 525..751 1135 100 Plus
3R 32079331 3R 5167159..5167262 751..854 520 100 Plus
3R 32079331 3R 5169448..5169515 858..925 340 100 Plus
3R 32079331 3R 12110323..12110412 557..646 255 85.6 Plus
Blast to na_te.dros performed on 2015-02-11 14:27:43 has no hits.

BO13622.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:29 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:14 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12591-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:16:40 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1538..2449 11..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:25 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 600..1362 163..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:25 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5167160..5167265 752..857 98 -> Plus
3R 5169448..5169515 858..925 100   Plus
3R 5165921..5166431 11..524 99 -> Plus
3R 5166863..5167089 525..751 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:16:40 Download gff for BO13622.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 991643..992153 11..524 99 -> Plus
arm_3R 992585..992811 525..751 100 -> Plus
arm_3R 992882..992987 752..857 98 -> Plus
arm_3R 995170..995237 858..925 100   Plus

BO13622.complete Sequence

991 bp assembled on 2006-10-11

GenBank Submission: FJ632867

> BO13622.complete
GAAGTTATCAGTCGACATGGGGTTTCTAAGCCACACAATTGTAAATCTTG
TTGGTGACGCGAAATGCAGAATAATGAATGAACTTATTGGTGAGGGCGCA
AGCCTACTTCCAAACTCCTTTGTCCATTACAAGCAACATACAAATAATAT
CCATGATAATTCGCACCTGCAGCTCAACCAGCACTCGGGAAAACCGCTCT
CCTGGGTTCGGTTGCGGGATGAACATATCATTGCGGTGGATCACACAACC
TTTATCAACGATGCCCGGTTCGCATCGCTGCTCCAGTCGACCACCTTGAC
GACACTTGTATCCGGAGGGGCCCTGTCCACAACTGCGACGCCCGTCGCTG
CCCTGGGCAACTCCTTCGCCCACGCTGTTCCTGGGGGTCAGGAGAGGGGC
AACAGCAGCAGCCTCAGCTGGACGCTGCAAATCAAGTATGTGAATCTGGA
GGACGCCGGCTGGTACGAGTGCCAGCTGGCAACGGAGCCCAAAATGAGCG
CCAAGGTGCAGCTGTTTGTGATAACACCCCGAACCGAGCTAATCGGCGAT
CGGCAGCGCTTTGTGAAGGCCGGCAGCAGGGTGGAGCTGCACTGCATCGT
ACGTGGCACCCTGGAGGCCCCCAAGTATATCTTCTGGTACCGTGGCGACC
AACAAGTGACTGCCGAAAACGAGGCCAGCGGCGCCCAGAGCGGATGGTAC
ACGCAAATCGACCGGAATATCTTCGGCAGCACCGAGCACAATCGGAACAC
GATTGGTTCCCTGGTCATTCCTCTGGTGCGCAAGATTCACTCCGGCAACT
ACACGTGTGAGCCGGAAAACAGTGCGGCAGCTTCTATGCAGTTGCACGTC
CTGAGCGGGGAATATTCTGCCTCCGCCATAAAGTCGACTGCTGCTAGGCC
CCACAGACTGGGTCACGGGTACACTAGTCTACACCAGTGGCTAATCTTTC
TTTTGGTGGCCCTGAACAAGACAGCAAGCTTTCTAGACCAT

BO13622.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 1467 CG12591-PC 662..1464 171..973 4015 100 Plus
dpr16-RB 1332 CG12591-PB 527..1329 171..973 4015 100 Plus
dpr17-RE 1527 CG31361-PE 948..1176 418..646 335 76.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:04:20
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-RC 2810 CG12591-RC 1450..2252 171..973 4015 100 Plus
dpr16-RB 1968 CG12591-RB 608..1410 171..973 4015 100 Plus
dpr17-RE 2663 CG31361-RE 1647..1875 418..646 335 76.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5165924..5166431 17..524 2540 100 Plus
3R 32079331 3R 5166863..5167089 525..751 1135 100 Plus
3R 32079331 3R 5169447..5169563 857..973 585 100 Plus
3R 32079331 3R 5167159..5167266 751..858 540 100 Plus
3R 32079331 3R 12110323..12110412 557..646 255 85.6 Plus
Blast to na_te.dros performed on 2014-11-27 11:04:18 has no hits.

BO13622.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:51 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1..960 17..976 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:52 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1538..2497 11..973 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:23:34 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1541..2497 17..975 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:51 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RA 1538..2497 11..973 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:06 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
dpr16-RB 600..1410 163..975 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:06 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5165924..5166431 17..524 100 -> Plus
3R 5166863..5167089 525..751 100 -> Plus
3R 5167160..5167265 752..857 100 -> Plus
3R 5169448..5169563 858..975 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:23:34 Download gff for BO13622.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 991646..992153 17..524 100 -> Plus
arm_3R 992585..992811 525..751 100 -> Plus
arm_3R 992882..992987 752..857 100 -> Plus
arm_3R 995170..995285 858..975 98   Plus

BO13622.pep Sequence

Translation from 16 to 991

> BO13622.pep
MGFLSHTIVNLVGDAKCRIMNELIGEGASLLPNSFVHYKQHTNNIHDNSH
LQLNQHSGKPLSWVRLRDEHIIAVDHTTFINDARFASLLQSTTLTTLVSG
GALSTTATPVAALGNSFAHAVPGGQERGNSSSLSWTLQIKYVNLEDAGWY
ECQLATEPKMSAKVQLFVITPRTELIGDRQRFVKAGSRVELHCIVRGTLE
APKYIFWYRGDQQVTAENEASGAQSGWYTQIDRNIFGSTEHNRNTIGSLV
IPLVRKIHSGNYTCEPENSAAASMQLHVLSGEYSASAIKSTAARPHRLGH
GYTSLHQWLIFLLVALNKTASFLDH

BO13622.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
dpr16-PB 443 CG12591-PB 176..443 52..319 1390 99.6 Plus
dpr16-PC 488 CG12591-PC 221..488 52..319 1390 99.6 Plus
dpr17-PE 508 CG31361-PE 243..477 25..299 675 49.8 Plus
dpr17-PC 508 CG31361-PC 243..477 25..299 675 49.8 Plus
dpr17-PB 508 CG31361-PB 243..477 25..299 675 49.8 Plus