Clone Sequence Records
BO13623.3prime Sequence
674 bp (673 high quality bases) assembled on 2006-05-08
> BO13623.3prime
ATGGTCTAGAAAGCTTGCGAGTCTCCAGGCGGCGACAAGACCGCTGATCA
GCAGCGTCATGGAGATGATCAACTGGGCACCGCTGTCGCGTGCCAGCGGA
ATGTTGGTATCATTGGCCAGCAGAAAGTTGCAGCCGCGTCCCTCGCACGT
ATAACAGTTGCCATCCTTGACGCACTGCTTCCTGGCATTCGCCGAGGTGA
GACAGCCGCGCTGGAAGGATCCGTCCACGGTGCGATTGCTATTGCGAATG
TAGCACTTGTCGCCGAACTTGTACAGCGGGCAGATCTTGGCCGATACATA
GGTCTCTGTGGCGCAGGACGACGAGGTCGAGTTCCCTGTGCACTGTAGGC
ACATGAGGCGGCTCAACGGGAAGGTGTTTCGATTGCATCCCTCGCTGTAG
GTGCACAGCTGGCACAGTAGCTCGTTGTTGCACGAATTACGCGTGGCGTT
GTCCAGATCGACGGCACAGCCGCGAATTGTGTAGCCATCCAGGACGCGGG
AATAGCAGTTGGAGGATCCATCGGAACAGTTGCGATTGAGCAGGCTCAAT
GGATCTGTGGCGCAGCGTTCGTTGTCCTTCGAATTGCACTGGATGCATCC
ATCACAACTGATGTAGGCCAAAAACGAGAGGGCTGCAATCACCAACAGGT
AAAACTTCATGTCGACTGATAACT
BO13623.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 645 | CG15347-RA | 1..642 | 660..19 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 923 | CG15347-RA | 75..717 | 661..19 | 3215 | 100 | Minus |
CG15347-RB | 968 | CG15347-RB | 178..762 | 603..19 | 2925 | 100 | Minus |
CG15347-RB | 968 | CG15347-RB | 75..133 | 661..603 | 295 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458700..8459170 | 19..489 | 2355 | 100 | Plus |
X | 23542271 | X | 8459224..8459338 | 489..603 | 575 | 100 | Plus |
X | 23542271 | X | 8460766..8460824 | 603..661 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:31:14 has no hits.
BO13623.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:30 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 1..645 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:15 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 1..645 | 15..660 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:31 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 65..721 | 14..674 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:48 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 65..721 | 14..674 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:48 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8458696..8459169 | 14..488 | 99 | <- | Plus |
X | 8459224..8459337 | 489..602 | 100 | <- | Plus |
X | 8460766..8460834 | 603..674 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:31 Download gff for
BO13623.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352729..8353202 | 14..488 | 99 | <- | Plus |
arm_X | 8353257..8353370 | 489..602 | 100 | <- | Plus |
arm_X | 8354799..8354867 | 603..674 | 95 | | Plus |
BO13623.5prime Sequence
674 bp (673 high quality bases) assembled on 2006-05-08
> BO13623.5prime
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCGCAAGCTTTCTAGACC
BO13623.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 645 | CG15347-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:44:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 923 | CG15347-RA | 75..717 | 16..658 | 3215 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 178..762 | 74..658 | 2925 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 75..133 | 16..74 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:44:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458700..8459170 | 658..188 | 2355 | 100 | Minus |
X | 23542271 | X | 8459224..8459338 | 188..74 | 575 | 100 | Minus |
X | 23542271 | X | 8460766..8460824 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:44:56 has no hits.
BO13623.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:31 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:17 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-PA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:07 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 63..721 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:59 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 63..721 | 1..663 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:59 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8459224..8459337 | 75..188 | 100 | <- | Minus |
X | 8458696..8459169 | 189..663 | 99 | <- | Minus |
X | 8460766..8460834 | 1..74 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:07 Download gff for
BO13623.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352729..8353202 | 189..663 | 99 | <- | Minus |
arm_X | 8353257..8353370 | 75..188 | 100 | <- | Minus |
arm_X | 8354799..8354867 | 1..74 | 93 | | Minus |
BO13623.complete Sequence
676 bp assembled on 2006-10-11
GenBank Submission: FJ632868
> BO13623.complete
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCGCAAGCTTTCTAGACCAT
BO13623.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 645 | CG15347-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
CG15347-RB | 690 | CG15347-PB | 103..687 | 74..658 | 2925 | 100 | Plus |
CG15347-RB | 690 | CG15347-PB | 1..58 | 17..74 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-RA | 923 | CG15347-RA | 75..717 | 16..658 | 3215 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 178..762 | 74..658 | 2925 | 100 | Plus |
CG15347-RB | 968 | CG15347-RB | 75..133 | 16..74 | 295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 8458700..8459170 | 658..188 | 2355 | 100 | Minus |
X | 23542271 | X | 8459224..8459338 | 188..74 | 575 | 100 | Minus |
X | 23542271 | X | 8460766..8460824 | 74..16 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:23:39 has no hits.
BO13623.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:52 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 1..645 | 17..662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:54 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 59..717 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:49 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 76..717 | 17..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:52 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 59..717 | 1..663 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:27 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15347-RA | 76..717 | 17..660 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:27 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 8458698..8459169 | 189..660 | 99 | <- | Minus |
X | 8459224..8459337 | 75..188 | 100 | <- | Minus |
X | 8460766..8460823 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:49 Download gff for
BO13623.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 8352731..8353202 | 189..660 | 99 | <- | Minus |
arm_X | 8353257..8353370 | 75..188 | 100 | <- | Minus |
arm_X | 8354799..8354856 | 17..74 | 100 | | Minus |
BO13623.pep Sequence
Translation from 16 to 676
> BO13623.pep
MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS
NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS
RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ
RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS
MTLLISGLVAAWRLASFLDH
BO13623.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15347-PA | 214 | CG15347-PA | 1..214 | 1..214 | 1158 | 100 | Plus |
CG15347-PB | 229 | CG15347-PB | 1..229 | 1..214 | 1132 | 93.4 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2799..2975 | 22..211 | 204 | 26.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1538..1695 | 22..178 | 184 | 31.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 698..849 | 22..178 | 176 | 31.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2114 | 22..178 | 176 | 32.7 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2382..2540 | 22..183 | 174 | 31.5 | Plus |
CG13492-PD | 2979 | CG13492-PD | 278..432 | 22..178 | 169 | 33.9 | Plus |
CG15773-PB | 319 | CG15773-PB | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG15773-PA | 478 | CG15773-PA | 25..177 | 14..178 | 163 | 29.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2638..2790 | 22..180 | 162 | 29.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1120..1271 | 22..178 | 154 | 26.9 | Plus |