Clone BO13623 Report

Search the DGRC for BO13623

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptCG15347-RA
Protein status:BO13623.pep: validated full length
Sequenced Size:676

Clone Sequence Records

BO13623.3prime Sequence

674 bp (673 high quality bases) assembled on 2006-05-08

> BO13623.3prime
ATGGTCTAGAAAGCTTGCGAGTCTCCAGGCGGCGACAAGACCGCTGATCA
GCAGCGTCATGGAGATGATCAACTGGGCACCGCTGTCGCGTGCCAGCGGA
ATGTTGGTATCATTGGCCAGCAGAAAGTTGCAGCCGCGTCCCTCGCACGT
ATAACAGTTGCCATCCTTGACGCACTGCTTCCTGGCATTCGCCGAGGTGA
GACAGCCGCGCTGGAAGGATCCGTCCACGGTGCGATTGCTATTGCGAATG
TAGCACTTGTCGCCGAACTTGTACAGCGGGCAGATCTTGGCCGATACATA
GGTCTCTGTGGCGCAGGACGACGAGGTCGAGTTCCCTGTGCACTGTAGGC
ACATGAGGCGGCTCAACGGGAAGGTGTTTCGATTGCATCCCTCGCTGTAG
GTGCACAGCTGGCACAGTAGCTCGTTGTTGCACGAATTACGCGTGGCGTT
GTCCAGATCGACGGCACAGCCGCGAATTGTGTAGCCATCCAGGACGCGGG
AATAGCAGTTGGAGGATCCATCGGAACAGTTGCGATTGAGCAGGCTCAAT
GGATCTGTGGCGCAGCGTTCGTTGTCCTTCGAATTGCACTGGATGCATCC
ATCACAACTGATGTAGGCCAAAAACGAGAGGGCTGCAATCACCAACAGGT
AAAACTTCATGTCGACTGATAACT

BO13623.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 645 CG15347-RA 1..642 660..19 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 923 CG15347-RA 75..717 661..19 3215 100 Minus
CG15347-RB 968 CG15347-RB 178..762 603..19 2925 100 Minus
CG15347-RB 968 CG15347-RB 75..133 661..603 295 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458700..8459170 19..489 2355 100 Plus
X 23542271 X 8459224..8459338 489..603 575 100 Plus
X 23542271 X 8460766..8460824 603..661 295 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:31:14 has no hits.

BO13623.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:30 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 1..645 15..660 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:15 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 1..645 15..660 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:31 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 65..721 14..674 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:15:48 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 65..721 14..674 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:15:48 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
X 8458696..8459169 14..488 99 <- Plus
X 8459224..8459337 489..602 100 <- Plus
X 8460766..8460834 603..674 95   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:31 Download gff for BO13623.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352729..8353202 14..488 99 <- Plus
arm_X 8353257..8353370 489..602 100 <- Plus
arm_X 8354799..8354867 603..674 95   Plus

BO13623.5prime Sequence

674 bp (673 high quality bases) assembled on 2006-05-08

> BO13623.5prime
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCGCAAGCTTTCTAGACC

BO13623.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 645 CG15347-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:44:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 923 CG15347-RA 75..717 16..658 3215 100 Plus
CG15347-RB 968 CG15347-RB 178..762 74..658 2925 100 Plus
CG15347-RB 968 CG15347-RB 75..133 16..74 295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:44:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458700..8459170 658..188 2355 100 Minus
X 23542271 X 8459224..8459338 188..74 575 100 Minus
X 23542271 X 8460766..8460824 74..16 295 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:44:56 has no hits.

BO13623.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:31 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 1..645 17..662 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:17 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-PA 1..645 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:30:07 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 63..721 1..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:57:59 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 63..721 1..663 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:57:59 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
X 8459224..8459337 75..188 100 <- Minus
X 8458696..8459169 189..663 99 <- Minus
X 8460766..8460834 1..74 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:30:07 Download gff for BO13623.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352729..8353202 189..663 99 <- Minus
arm_X 8353257..8353370 75..188 100 <- Minus
arm_X 8354799..8354867 1..74 93   Minus

BO13623.complete Sequence

676 bp assembled on 2006-10-11

GenBank Submission: FJ632868

> BO13623.complete
GAAGTTATCAGTCGACATGAAGTTTTACCTGTTGGTGATTGCAGCCCTCT
CGTTTTTGGCCTACATCAGTTGTGATGGATGCATCCAGTGCAATTCGAAG
GACAACGAACGCTGCGCCACAGATCCATTGAGCCTGCTCAATCGCAACTG
TTCCGATGGATCCTCCAACTGCTATTCCCGCGTCCTGGATGGCTACACAA
TTCGCGGCTGTGCCGTCGATCTGGACAACGCCACGCGTAATTCGTGCAAC
AACGAGCTACTGTGCCAGCTGTGCACCTACAGCGAGGGATGCAATCGAAA
CACCTTCCCGTTGAGCCGCCTCATGTGCCTACAGTGCACAGGGAACTCGA
CCTCGTCGTCCTGCGCCACAGAGACCTATGTATCGGCCAAGATCTGCCCG
CTGTACAAGTTCGGCGACAAGTGCTACATTCGCAATAGCAATCGCACCGT
GGACGGATCCTTCCAGCGCGGCTGTCTCACCTCGGCGAATGCCAGGAAGC
AGTGCGTCAAGGATGGCAACTGTTATACGTGCGAGGGACGCGGCTGCAAC
TTTCTGCTGGCCAATGATACCAACATTCCGCTGGCACGCGACAGCGGTGC
CCAGTTGATCATCTCCATGACGCTGCTGATCAGCGGTCTTGTCGCCGCCT
GGAGACTCGCAAGCTTTCTAGACCAT

BO13623.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:23:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 645 CG15347-PA 1..642 17..658 3210 100 Plus
CG15347-RB 690 CG15347-PB 103..687 74..658 2925 100 Plus
CG15347-RB 690 CG15347-PB 1..58 17..74 290 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:23:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-RA 923 CG15347-RA 75..717 16..658 3215 100 Plus
CG15347-RB 968 CG15347-RB 178..762 74..658 2925 100 Plus
CG15347-RB 968 CG15347-RB 75..133 16..74 295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:23:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8458700..8459170 658..188 2355 100 Minus
X 23542271 X 8459224..8459338 188..74 575 100 Minus
X 23542271 X 8460766..8460824 74..16 295 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:23:39 has no hits.

BO13623.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:52 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 1..645 17..662 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:54 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 59..717 1..663 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:41:49 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 76..717 17..660 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:52 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 59..717 1..663 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:10:27 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
CG15347-RA 76..717 17..660 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:10:27 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
X 8458698..8459169 189..660 99 <- Minus
X 8459224..8459337 75..188 100 <- Minus
X 8460766..8460823 17..74 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:41:49 Download gff for BO13623.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8352731..8353202 189..660 99 <- Minus
arm_X 8353257..8353370 75..188 100 <- Minus
arm_X 8354799..8354856 17..74 100   Minus

BO13623.pep Sequence

Translation from 16 to 676

> BO13623.pep
MKFYLLVIAALSFLAYISCDGCIQCNSKDNERCATDPLSLLNRNCSDGSS
NCYSRVLDGYTIRGCAVDLDNATRNSCNNELLCQLCTYSEGCNRNTFPLS
RLMCLQCTGNSTSSSCATETYVSAKICPLYKFGDKCYIRNSNRTVDGSFQ
RGCLTSANARKQCVKDGNCYTCEGRGCNFLLANDTNIPLARDSGAQLIIS
MTLLISGLVAAWRLASFLDH

BO13623.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG15347-PA 214 CG15347-PA 1..214 1..214 1158 100 Plus
CG15347-PB 229 CG15347-PB 1..229 1..214 1132 93.4 Plus
CG13492-PD 2979 CG13492-PD 2799..2975 22..211 204 26.9 Plus
CG13492-PD 2979 CG13492-PD 1538..1695 22..178 184 31.7 Plus
CG13492-PD 2979 CG13492-PD 698..849 22..178 176 31.1 Plus
CG13492-PD 2979 CG13492-PD 1963..2114 22..178 176 32.7 Plus
CG13492-PD 2979 CG13492-PD 2382..2540 22..183 174 31.5 Plus
CG13492-PD 2979 CG13492-PD 278..432 22..178 169 33.9 Plus
CG15773-PB 319 CG15773-PB 25..177 14..178 163 29.2 Plus
CG15773-PA 478 CG15773-PA 25..177 14..178 163 29.2 Plus
CG13492-PD 2979 CG13492-PD 2638..2790 22..180 162 29.9 Plus
CG13492-PD 2979 CG13492-PD 1120..1271 22..178 154 26.9 Plus