Clone Sequence Records
BO13624.5prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-08
> BO13624.5prime
GAAGTTATCACTCGACATGAAAGTATTCTTTGTGTTTGCCGCCCTTGCAG
CTCTATCTTTGGCATCTGCCGTGGGGCTAACTGATTCCCAAAAGGCTGAG
GCAAAGCAGAGAGCCAAGGCCTGCGTCAAACAGGAGGGAATCACGAAGGA
GCAAGCTATTGCCCTGCGGTCTGGAAACTTTGCAGACTCCGATCCAAAGG
TAAAGTGCTTCGCCAACTGCTTCCTGGAGCAGACCGGCCTGGTGGCCAAT
GGGCAGATAAAACCTGACGTGGTTTTGGCCAAACTAGGTCCCATCGCCGG
CGAAGCCAATGTCAAGGAGGTGCAGGCCAAGTGTGACTCGACCAAGGGAG
CCGACAAGTGCGACACTAGCTATCTGCTGTACAAGTGCTACTACGAAAAC
CACGCCCAATTCGCAAGCTTTCTAGACC
BO13624.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8462-PA | 399 | Obp56e-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56e-RA | 532 | CG8462-RA | 52..448 | 16..412 | 1985 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 52..445 | 16..412 | 1930 | 99.2 | Plus |
Obp56d-RB | 922 | CG11218-RB | 277..554 | 131..408 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19712509..19712848 | 73..412 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 19712396..19712454 | 16..74 | 295 | 100 | Plus |
2R | 25286936 | 2R | 19703292..19703569 | 408..131 | 250 | 72.7 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:22:40 has no hits.
BO13624.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:32 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8462-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:18 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8462-PA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:08 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 44..452 | 7..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:10 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 44..452 | 7..417 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:10 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19712388..19712453 | 7..73 | 94 | -> | Plus |
2R | 19712510..19712852 | 74..417 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:08 Download gff for
BO13624.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15599893..15599958 | 7..73 | 94 | -> | Plus |
arm_2R | 15600015..15600357 | 74..417 | 99 | | Plus |
BO13624.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ632869
> BO13624.complete
GAAGTTATCAGTCGACATGAAAGTATTCTTTGTGTTTGCCGCCCTTGCAG
CTCTATCTTTGGCATCTGCCGTGGGGCTAACTGATTCCCAAAAGGCTGAG
GCAAAGCAGAGAGCCAAGGCCTGCGTCAAACAGGAGGGAATCACGAAGGA
GCAAGCTATTGCCCTGCGGTCTGGAAACTTTGCAGACTCCGATCCAAAGG
TAAAGTGCTTCGCCAACTGCTTCCTGGAGCAGACCGGCCTGGTGGCCAAT
GGGCAGATAAAACCTGACGTGGTTTTGGCCAAACTAGGTCCCATCGCCGG
CGAAGCCAATGTCAAGGAGGTGCAGGCCAAGTGTGACTCGACCAAGGGAG
CCGACAAGTGCGACACTAGCTATCTGCTGTACAAGTGCTACTACGAAAAC
CACGCCCAATTCGCAAGCTTTCTAGACCAT
BO13624.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56e-RA | 399 | CG8462-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Obp56e-RB | 396 | CG8462-PB | 1..393 | 17..412 | 1900 | 99.2 | Plus |
Obp56d-RB | 396 | CG11218-PB | 112..389 | 131..408 | 250 | 72.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:02:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56e-RA | 532 | CG8462-RA | 52..448 | 16..412 | 1985 | 100 | Plus |
Obp56e-RB | 529 | CG8462-RB | 52..445 | 16..412 | 1905 | 99.2 | Plus |
Obp56d-RB | 922 | CG11218-RB | 277..554 | 131..408 | 250 | 72.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:02:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19712509..19712848 | 73..412 | 1700 | 100 | Plus |
2R | 25286936 | 2R | 19712396..19712454 | 16..74 | 295 | 100 | Plus |
2R | 25286936 | 2R | 19703292..19703569 | 408..131 | 250 | 72.7 | Minus |
Blast to na_te.dros performed on 2014-11-27 11:02:21 has no hits.
BO13624.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:58:48 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 1..399 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:30:51 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 44..452 | 7..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:44:12 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 53..448 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:58:49 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 44..452 | 7..417 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:37:17 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Obp56e-RA | 53..448 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:37:17 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19712397..19712453 | 17..73 | 100 | -> | Plus |
2R | 19712510..19712848 | 74..414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:44:12 Download gff for
BO13624.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15599902..15599958 | 17..73 | 100 | -> | Plus |
arm_2R | 15600015..15600353 | 74..414 | 99 | | Plus |
BO13624.pep Sequence
Translation from 16 to 430
> BO13624.pep
MKVFFVFAALAALSLASAVGLTDSQKAEAKQRAKACVKQEGITKEQAIAL
RSGNFADSDPKVKCFANCFLEQTGLVANGQIKPDVVLAKLGPIAGEANVK
EVQAKCDSTKGADKCDTSYLLYKCYYENHAQFASFLDH
BO13624.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:19:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Obp56e-PA | 132 | CG8462-PA | 1..132 | 1..132 | 675 | 100 | Plus |
Obp56e-PB | 131 | CG8462-PB | 1..131 | 1..132 | 659 | 99.2 | Plus |
Obp56d-PB | 131 | CG11218-PB | 1..129 | 1..130 | 439 | 63.8 | Plus |
Obp56d-PA | 131 | CG11218-PA | 1..129 | 1..130 | 439 | 63.8 | Plus |
Obp56a-PA | 139 | CG11797-PA | 1..128 | 1..125 | 245 | 37.5 | Plus |