Clone Sequence Records
BO13627.3prime Sequence
504 bp (503 high quality bases) assembled on 2006-05-08
> BO13627.3prime
ATGGTCTAGAAAGCTTGCCGCGCACCACCTTGATGTCGATGGTGAAGCAG
CAACGTTTCTGGGAAACCGGATCCTTCAGGGCCCAACGGATGGTGTATGG
ACTCAGCGGGAACCTGGCGTCGGCGGGCATGTTGTTGGTGTAGGTCTGGG
TGACTCCGGATCTCACGGGGCAGGTGGTGTACTTGCAGGCCTCCTGGTCC
ATGGTAAGCAGGGGCAGCTCCACGTTCTCGCTCTTGGCCCAGCCCAAGCT
GGCCACCAGGGTGTCCGCATCGAAGTGGGGCGTAAAGTCGAAGCTCATCG
TGAAGCGGTGCCTCCGGCGAATGTGGCATGCGGCATTGGCATTGGCTTCC
GGACAGGGCGTCACCCGCACCTGACTAATCGAGCAGGAGTCCACACTATC
TTCGCAAGTCTGAAAGTTGACTATCTCAGCGGAGACGGATGACAACACCA
GAGCAAAGGCGACAGGCAGGAGCGAACTCAGACGCAACATGTCGACTGAT
AACT
BO13627.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11315-PA | 474 | CG11315-RA | 1..471 | 490..20 | 2355 | 100 | Minus |
CG11315-PB | 393 | CG11315-RB | 1..308 | 490..183 | 1540 | 100 | Minus |
CG11315-PB | 393 | CG11315-RB | 309..390 | 101..20 | 410 | 100 | Minus |
CG11314-PA | 480 | CG11314-RA | 198..290 | 299..207 | 315 | 93.5 | Minus |
CG11314-PA | 480 | CG11314-RA | 391..477 | 106..20 | 260 | 91.9 | Minus |
CG11314-PA | 480 | CG11314-RA | 307..344 | 190..153 | 140 | 94.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:39:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..501 | 491..20 | 2360 | 100 | Minus |
Npc2h-RA | 812 | CG11315-RA | 30..501 | 491..20 | 2360 | 100 | Minus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 491..183 | 1545 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745790..30746261 | 20..491 | 2360 | 100 | Plus |
3R | 32079331 | 3R | 30744757..30745180 | 20..443 | 875 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-08 12:39:38 has no hits.
BO13627.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:33 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 18..490 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:19 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 18..490 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:27 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 23..506 | 14..495 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:04 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 25..508 | 14..495 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:04 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745783..30746266 | 14..495 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:27 Download gff for
BO13627.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571505..26571988 | 14..495 | 99 | | Plus |
BO13627.5prime Sequence
504 bp (503 high quality bases) assembled on 2006-05-08
> BO13627.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGGCAAGCTTTCTA
GACC
BO13627.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11315-PA | 474 | CG11315-RA | 1..471 | 17..487 | 2355 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 1..308 | 17..324 | 1540 | 100 | Plus |
CG11315-PB | 393 | CG11315-RB | 309..390 | 406..487 | 410 | 100 | Plus |
CG11314-PA | 480 | CG11314-RA | 198..290 | 208..300 | 315 | 93.5 | Plus |
CG11314-PA | 480 | CG11314-RA | 391..477 | 401..487 | 260 | 91.9 | Plus |
CG11314-PA | 480 | CG11314-RA | 307..344 | 317..354 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:45:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745790..30746261 | 487..16 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 30744757..30745180 | 487..64 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:45:47 has no hits.
BO13627.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:34 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:20 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11315-PA | 1..474 | 17..489 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:50 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 23..506 | 12..493 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:16 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 25..508 | 12..493 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:16 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745783..30746266 | 12..493 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:50 Download gff for
BO13627.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571505..26571988 | 12..493 | 99 | | Minus |
BO13627.complete Sequence
506 bp assembled on 2011-06-28
> BO13627.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGGCAAGCTTTCTA
GACCAT
BO13627.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 474 | CG11315-PC | 1..471 | 17..487 | 2355 | 100 | Plus |
Npc2h-RA | 474 | CG11315-PA | 1..471 | 17..487 | 2355 | 100 | Plus |
Npc2h-RB | 393 | CG11315-PB | 1..308 | 17..324 | 1540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-RC | 597 | CG11315-RC | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RA | 812 | CG11315-RA | 30..501 | 16..487 | 2360 | 100 | Plus |
Npc2h-RB | 731 | CG11315-RB | 30..338 | 16..324 | 1545 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30745790..30746261 | 487..16 | 2360 | 100 | Minus |
3R | 32079331 | 3R | 30744757..30745180 | 487..64 | 875 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:10:23 has no hits.
BO13627.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:13 Download gff for
BO13627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 34..503 | 22..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:58 Download gff for
BO13627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 34..503 | 22..490 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:47 Download gff for
BO13627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Npc2h-RA | 36..505 | 22..490 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:47 Download gff for
BO13627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30745786..30746255 | 22..490 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:58 Download gff for
BO13627.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26571508..26571977 | 22..490 | 99 | | Minus |
BO13627.pep Sequence
Translation from 16 to 505
> BO13627.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVRGKLSRP
BO13627.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Npc2h-PC | 157 | CG11315-PC | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2h-PA | 157 | CG11315-PA | 1..157 | 1..157 | 827 | 100 | Plus |
Npc2g-PB | 159 | CG11314-PB | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2g-PA | 159 | CG11314-PA | 1..159 | 1..157 | 643 | 78 | Plus |
Npc2h-PB | 130 | CG11315-PB | 1..130 | 1..157 | 638 | 82.2 | Plus |