Clone BO13627 Report

Search the DGRC for BO13627

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptNpc2h-RA
Protein status:BO13627.pep: Imported from assembly
Sequenced Size:506

Clone Sequence Records

BO13627.3prime Sequence

504 bp (503 high quality bases) assembled on 2006-05-08

> BO13627.3prime
ATGGTCTAGAAAGCTTGCCGCGCACCACCTTGATGTCGATGGTGAAGCAG
CAACGTTTCTGGGAAACCGGATCCTTCAGGGCCCAACGGATGGTGTATGG
ACTCAGCGGGAACCTGGCGTCGGCGGGCATGTTGTTGGTGTAGGTCTGGG
TGACTCCGGATCTCACGGGGCAGGTGGTGTACTTGCAGGCCTCCTGGTCC
ATGGTAAGCAGGGGCAGCTCCACGTTCTCGCTCTTGGCCCAGCCCAAGCT
GGCCACCAGGGTGTCCGCATCGAAGTGGGGCGTAAAGTCGAAGCTCATCG
TGAAGCGGTGCCTCCGGCGAATGTGGCATGCGGCATTGGCATTGGCTTCC
GGACAGGGCGTCACCCGCACCTGACTAATCGAGCAGGAGTCCACACTATC
TTCGCAAGTCTGAAAGTTGACTATCTCAGCGGAGACGGATGACAACACCA
GAGCAAAGGCGACAGGCAGGAGCGAACTCAGACGCAACATGTCGACTGAT
AACT

BO13627.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11315-PA 474 CG11315-RA 1..471 490..20 2355 100 Minus
CG11315-PB 393 CG11315-RB 1..308 490..183 1540 100 Minus
CG11315-PB 393 CG11315-RB 309..390 101..20 410 100 Minus
CG11314-PA 480 CG11314-RA 198..290 299..207 315 93.5 Minus
CG11314-PA 480 CG11314-RA 391..477 106..20 260 91.9 Minus
CG11314-PA 480 CG11314-RA 307..344 190..153 140 94.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:39:42
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..501 491..20 2360 100 Minus
Npc2h-RA 812 CG11315-RA 30..501 491..20 2360 100 Minus
Npc2h-RB 731 CG11315-RB 30..338 491..183 1545 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:39:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745790..30746261 20..491 2360 100 Plus
3R 32079331 3R 30744757..30745180 20..443 875 80.4 Plus
Blast to na_te.dros performed on 2015-02-08 12:39:38 has no hits.

BO13627.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:33 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 18..490 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:19 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 18..490 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:27 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 23..506 14..495 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:04 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 25..508 14..495 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:04 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30745783..30746266 14..495 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:27 Download gff for BO13627.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571505..26571988 14..495 99   Plus

BO13627.5prime Sequence

504 bp (503 high quality bases) assembled on 2006-05-08

> BO13627.5prime
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGGCAAGCTTTCTA
GACC

BO13627.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11315-PA 474 CG11315-RA 1..471 17..487 2355 100 Plus
CG11315-PB 393 CG11315-RB 1..308 17..324 1540 100 Plus
CG11315-PB 393 CG11315-RB 309..390 406..487 410 100 Plus
CG11314-PA 480 CG11314-RA 198..290 208..300 315 93.5 Plus
CG11314-PA 480 CG11314-RA 391..477 401..487 260 91.9 Plus
CG11314-PA 480 CG11314-RA 307..344 317..354 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..501 16..487 2360 100 Plus
Npc2h-RA 812 CG11315-RA 30..501 16..487 2360 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:45:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745790..30746261 487..16 2360 100 Minus
3R 32079331 3R 30744757..30745180 487..64 875 80.4 Minus
Blast to na_te.dros performed on 2015-02-11 16:45:47 has no hits.

BO13627.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:34 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..489 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:20 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11315-PA 1..474 17..489 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:05:50 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 23..506 12..493 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:16 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 25..508 12..493 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:16 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30745783..30746266 12..493 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:05:50 Download gff for BO13627.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571505..26571988 12..493 99   Minus

BO13627.complete Sequence

506 bp assembled on 2011-06-28

> BO13627.complete
GAAGTTATCAGTCGACATGTTGCGTCTGAGTTCGCTCCTGCCTGTCGCCT
TTGCTCTGGTGTTGTCATCCGTCTCCGCTGAGATAGTCAACTTTCAGACT
TGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTGCGGGTGACGCC
CTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCACC
GCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTG
GTGGCCAGCTTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCT
TACCATGGACCAGGAGGCCTGCAAGTACACCACCTGCCCCGTGAGATCCG
GAGTCACCCAGACCTACACCAACAACATGCCCGCCGACGCCAGGTTCCCG
CTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCGGTTTCCCAGAA
ACGTTGCTGCTTCACCATCGACATCAAGGTGGTGCGCGGCAAGCTTTCTA
GACCAT

BO13627.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 474 CG11315-PC 1..471 17..487 2355 100 Plus
Npc2h-RA 474 CG11315-PA 1..471 17..487 2355 100 Plus
Npc2h-RB 393 CG11315-PB 1..308 17..324 1540 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:25
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-RC 597 CG11315-RC 30..501 16..487 2360 100 Plus
Npc2h-RA 812 CG11315-RA 30..501 16..487 2360 100 Plus
Npc2h-RB 731 CG11315-RB 30..338 16..324 1545 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30745790..30746261 487..16 2360 100 Minus
3R 32079331 3R 30744757..30745180 487..64 875 80.4 Minus
Blast to na_te.dros performed on 2014-11-26 16:10:23 has no hits.

BO13627.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:13 Download gff for BO13627.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 34..503 22..490 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:53:58 Download gff for BO13627.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 34..503 22..490 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:47 Download gff for BO13627.complete
Subject Subject Range Query Range Percent Splice Strand
Npc2h-RA 36..505 22..490 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:47 Download gff for BO13627.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30745786..30746255 22..490 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:53:58 Download gff for BO13627.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26571508..26571977 22..490 99   Minus

BO13627.pep Sequence

Translation from 16 to 505

> BO13627.pep
MLRLSSLLPVAFALVLSSVSAEIVNFQTCEDSVDSCSISQVRVTPCPEAN
ANAACHIRRRHRFTMSFDFTPHFDADTLVASLGWAKSENVELPLLTMDQE
ACKYTTCPVRSGVTQTYTNNMPADARFPLSPYTIRWALKDPVSQKRCCFT
IDIKVVRGKLSRP

BO13627.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
Npc2h-PC 157 CG11315-PC 1..157 1..157 827 100 Plus
Npc2h-PA 157 CG11315-PA 1..157 1..157 827 100 Plus
Npc2g-PB 159 CG11314-PB 1..159 1..157 643 78 Plus
Npc2g-PA 159 CG11314-PA 1..159 1..157 643 78 Plus
Npc2h-PB 130 CG11315-PB 1..130 1..157 638 82.2 Plus