Clone Sequence Records
BO13628.3prime Sequence
727 bp (714 high quality bases) assembled on 2006-05-08
> BO13628.3prime
ATGGTCTAGAAAGCTTGCCTTTTTGTGGAGGTAGCCACCGTGGGCGGAGC
CGCCGTAGGAGGAGCTGCCGTAGGAGGAGATTCCGTGTCCGGAAATTCCG
TATCCGGAGATTCCGTGTCCGGAGTAGCCGTGGCTGATGATGGCAGGAGC
AGCGGCAACGGTGTGGGTGACGGCCACGGCGGGCTTGACGTGGCTCTCAA
CGTGGACAGGCACGGGCACGGCCACCTTGTAGGGCACTGGACGCTCCACA
TGGACGGGCACCTTGTGGATCACACGCTTCTCGACGGTGTATGGCACGGG
CTTCTCCACGGGCACGGGGTATGGCTTGTCGACATGGACGGTGTAGGGAC
GATCAACTGGGATCTTCACGGGCACACGGATCACCTTCTCGACGGGGTAG
GGCTGGGGCACCTCGACGGGCACCTTCACGATCTGCTTGACGGGCACATG
GACGATCTTCTCCACGGGGTAGGGCTGGGGCACGGGCACCTTAACGGGAT
AGGTGACGGTCTTCTCGACGGGGTAGGGAACGTGACGCTCCACCTGGTAG
GGCACCTGCACGGTCCTCACCACGGTGTTGGTGTGCACCTGGGTGGGCAG
CTCAGCGACAGCGGGAGCCACTGGAACTCCAACACCGATGCCGGATCCCA
GAATGGCGCCCTCCCGCCGATGGTCCGTATCCGTAGCCCAGACCGTGGCC
AATGCCGCGCTTCTCCTGCTTCTTCTC
BO13628.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-PA | 813 | CG16885-RA | 169..810 | 660..19 | 3210 | 100 | Minus |
| CG16885-PB | 471 | CG16885-RB | 169..445 | 660..384 | 1385 | 100 | Minus |
| CG16885-PA | 813 | CG16885-RA | 103..170 | 727..660 | 340 | 100 | Minus |
| CG16885-PB | 471 | CG16885-RB | 103..170 | 727..660 | 340 | 100 | Minus |
| CG16884-PA | 834 | CG16884-RA | 436..462 | 495..469 | 135 | 100 | Minus |
| CG30101-PA | 987 | CG30101-RA | 409..435 | 495..469 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-RA | 1333 | CG16885-RA | 186..893 | 727..19 | 3520 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13932999..13933706 | 19..727 | 3495 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:25:00 has no hits.
BO13628.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:35 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-PA | 103..813 | 18..727 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:22 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-PA | 103..813 | 18..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 10:39:17 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 186..893 | 19..727 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:38:51 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 186..893 | 19..727 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:38:51 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13932999..13933706 | 19..727 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 10:39:17 Download gff for
BO13628.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13932999..13933706 | 19..727 | 99 | | Plus |
BO13628.5prime Sequence
783 bp (740 high quality bases) assembled on 2006-05-08
> BO13628.5prime
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATCGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCGAGAAGGTGATCCGTGTGCCCGTGAAGATCCCAGTTGATCGTCCCT
ACACCGTCCATGTCGACAAGCCATACCCCGTGCCCGTGGAGAAGCCCGTG
CCATACACCGTCGAGAAGCGTGTGATCCACAAGGTGCCCGTCCATGTGGA
GCGTCCAGTGCCCTACAAGGTGGCCGTGCCCGTGCCTGTCCACGTTGAGA
GCCACGTCAAGCCCGCCGTGGCCGTCACCCACACCGTTGCCGCTGCTCCT
GCCATCATCAGCCACGGCTACTCCGGACACGGAATCTCCGGATACGGAAT
TTCCGGACACGGAATCTCCTCCTACGGCAGCTC
BO13628.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-PA | 813 | CG16885-RA | 1..767 | 17..783 | 3835 | 100 | Plus |
| CG16885-PB | 471 | CG16885-RB | 1..445 | 17..461 | 2225 | 100 | Plus |
| CG16884-PA | 834 | CG16884-RA | 436..462 | 350..376 | 135 | 100 | Plus |
| CG30101-PA | 987 | CG30101-RA | 409..435 | 350..376 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-RA | 1333 | CG16885-RA | 84..850 | 17..783 | 3835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13933042..13933797 | 783..28 | 3780 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:12 has no hits.
BO13628.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:36 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:23 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-PA | 1..767 | 17..783 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:12 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 76..850 | 10..783 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:31:38 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 76..850 | 10..783 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:38 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13933042..13933799 | 25..783 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:12 Download gff for
BO13628.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13933042..13933799 | 25..783 | 99 | | Minus |
BO13628.complete Sequence
844 bp assembled on 2006-10-11
GenBank Submission: FJ632870
> BO13628.complete
GAAGTTATCAGTCGACATGAAATCCATGCTCATTTTCGGCCTTGTGGCGA
TGTGCGTGCTGGTGGCCAACGCCAGTGAGGAGGCACCCAAGAAGGCCGTC
GAGACCGCCGAGCCCGCCGAGAAGAAGCAGGAGAAGCGCGGCATTGGCCA
CGGTCTGGGCTACGGATACGGACCATCGGCGGGAGGCGCCATTCTGGGAT
CCGGCATCGGTGTTGGAGTTCCAGTGGCTCCCGCTGTCGCTGAGCTGCCC
ACCCAGGTGCACACCAACACCGTGGTGAGGACCGTGCAGGTGCCCTACCA
GGTGGAGCGTCACGTTCCCTACCCCGTCGAGAAGACCGTCACCTATCCCG
TTAAGGTGCCCGTGCCCCAGCCCTACCCCGTGGAGAAGATCGTCCATGTG
CCCGTCAAGCAGATCGTGAAGGTGCCCGTCGAGGTGCCCCAGCCCTACCC
CGTCGAGAAGGTGATCCGTGTGCCCGTGAAGATCCCAGTTGATCGTCCCT
ACACCGTCCATGTCGACAAGCCATACCCCGTGCCCGTGGAGAAGCCCGTG
CCATACACCGTCGAGAAGCGTGTGATCCACAAGGTGCCCGTCCATGTGGA
GCGTCCAGTGCCCTACAAGGTGGCCGTGCCCGTGCCTGTCCACGTTGAGA
GCCACGTCAAGCCCGCCGTGGCCGTCACCCACACCGTTGCCGCTGCTCCT
GCCATCATCAGCCACGGCTACTCCGGACACGGAATCTCCGGATACGGAAT
TTCCGGACACGGAATCTCCTCCTACGGCAGCTCCTCCTACGGCGGCTCCG
CCCACGGTGGCTACCTCCACAAAAAGGCAAGCTTTCTAGACCAT
BO13628.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-RA | 813 | CG16885-PA | 1..810 | 17..826 | 4050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-RA | 1333 | CG16885-RA | 84..893 | 17..826 | 4050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13932999..13933797 | 826..28 | 3995 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:09:44 has no hits.
BO13628.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:54 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 1..813 | 17..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:57 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 75..892 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:37:53 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 84..893 | 17..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:54 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 75..892 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:17 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16885-RA | 84..893 | 17..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:17 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13932997..13933799 | 25..828 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:37:53 Download gff for
BO13628.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13932997..13933799 | 25..828 | 99 | | Minus |
BO13628.pep Sequence
Translation from 16 to 844
> BO13628.pep
MKSMLIFGLVAMCVLVANASEEAPKKAVETAEPAEKKQEKRGIGHGLGYG
YGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTNTVVRTVQVPYQVERHV
PYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQPYPVEKVI
RVPVKIPVDRPYTVHVDKPYPVPVEKPVPYTVEKRVIHKVPVHVERPVPY
KVAVPVPVHVESHVKPAVAVTHTVAAAPAIISHGYSGHGISGYGISGHGI
SSYGSSSYGGSAHGGYLHKKASFLDH
BO13628.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16885-PA | 270 | CG16885-PA | 1..270 | 1..270 | 1420 | 100 | Plus |
| CG16884-PA | 277 | CG16884-PA | 7..272 | 9..238 | 382 | 41.8 | Plus |
| CG30101-PA | 328 | CG30101-PA | 3..198 | 4..215 | 334 | 39.2 | Plus |
| CG16886-PB | 358 | CG16886-PB | 138..301 | 72..220 | 327 | 48.2 | Plus |
| CG16886-PA | 373 | CG16886-PA | 138..301 | 72..220 | 327 | 48.2 | Plus |
| CG16886-PB | 358 | CG16886-PB | 38..284 | 22..230 | 320 | 40 | Plus |
| CG30101-PA | 328 | CG30101-PA | 131..328 | 90..243 | 278 | 40.4 | Plus |
| CG30101-PA | 328 | CG30101-PA | 85..263 | 64..224 | 268 | 41.7 | Plus |
| CG16886-PB | 358 | CG16886-PB | 159..323 | 77..214 | 268 | 42.4 | Plus |
| CG16886-PB | 358 | CG16886-PB | 177..326 | 77..201 | 212 | 42.2 | Plus |
| CG16886-PB | 358 | CG16886-PB | 233..349 | 92..213 | 160 | 37.9 | Plus |
