Clone Sequence Records
BO13629.3prime Sequence
762 bp (725 high quality bases) assembled on 2006-05-08
> BO13629.3prime
ATGGTCTAGAAAGCTTGCGACGAGGCTAATGCTAAGGCCCATTGGTAATC
GCAGGCCAGCGAGTTGGATTGAAGCTTGGTGGGAATTTTGGTGGCTGTTT
CCTTGTTTGTGGTGGCTCTGCGGTTCCAGTGGCGCTTCCGCCTCCTGCAC
CACTTCCAGTTCCGCTCGGCCATCCACTTCTTCCTCCTCCTCCAGCTCCA
GCTCCATTTCTTGTGCCTGCTGGTTTTCCTTGTTCTCCTCGTGGGTAACC
TGATAGCGGGCAGTTGGCAGGACTTCGGATATGGCGGTATCGAATTCCAG
CAGTATCTCATCATCATCGAGGTCCCGCGTCCAGCGCGGCGCCTCTTTGA
GCGGACTCATGATCTGCGGGAGTTTCGAGCAGGCGGGGTTTGATTCTGCT
GAATATGCGGCGGGTTCTTCCCGACTGAGTGTGGTTCCCAGTCGACGGAA
CATGGCCACTACTTTGCCATCCACACTGGGCTGCGGGAATCTTTGGTAAG
TGGGCGTGGATTGTGTATTGAGCACTGGTGTGGGTGTAGCTGTAGCTGCC
ACATCCTTAACCAGTCGCTCCACTGGTTTCCGGCGCGGCGCCACACACTC
CACCTTGCAGATCGCATTGCTCCTCTTCTGGCCCTGCGGCCTAAGACAGA
CGAACACCGACTGCTGATTGCGCTTCTTGGGACTCCGCCGCAGACTCTCC
ACACAACACTGGCGCAGCACTCGGCTCATCCGGCTGACCGAGGCACTGCG
TCTGCTGGCTCT
BO13629.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10108-PA | 1203 | phyl-RA | 457..1200 | 762..19 | 3695 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 701..1444 | 762..19 | 3705 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14427731..14428474 | 19..762 | 3705 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:25:09 has no hits.
BO13629.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:37 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-PA | 457..1203 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:25 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10108-PA | 457..1203 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:09 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 701..1447 | 15..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:38:43 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 701..1447 | 15..762 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:38:43 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14427727..14428474 | 15..762 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:09 Download gff for
BO13629.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315232..10315979 | 15..762 | 99 | | Plus |
BO13629.5prime Sequence
810 bp (741 high quality bases) assembled on 2006-05-08
> BO13629.5prime
GAAGTTATCAGTCGACATGTCTACCAATCAGCAGCAGCAGGCGAATCCTT
CGGCGGCCGTTGCCGCACCCGCCGCCTCCTCGGAATACCTGAAACGCACC
TGCCTCATCTGCGGCTGCCACACCAACCAGACGATCAATATCTACGAGCC
CCGCTCCGGACCCAATATCGTTCAGCTAATCCAGGCGAAATTCAAGTTTC
AGCCCCTGAACGAGGACAAATTCCTCTGCTTTAGCTGCAACAACTGGCTG
ATCAACTGGCACTCCCTGCAGGCGGTCAACAGCAATGAGGCCGAAAGCCA
GAGCCAAAGTCCCTCGCACATGGGCAACAGTGTGCTGCAGCAGGAAAGGA
CGAAGCTCCGTCCGGTGGCGATGGTTCGACCCACGGTGCGAGTGCAGCCC
CAATCGCAGCCCCAACTGCAGCCCCAAGTTCCAATTAATCCCACACCCGC
ACCCATAGTCTATTCGAAGCGAAGAGCCAGCAGACGCAGTGCCTCCGTCA
GCCGGATGAGCCGAGTGCTGCGCCAGTGTTGTGTGGAGAGTCTGCGGCGG
AGTCCCAAGAAGCGCAATCAGCAGTCGGTGTTCGTCTGTCTTAGGCCGCA
GGGCCAGAAGAGGAGCAATGCGATCTGCAAGGTGGAGTGTGTGGCGCCGC
GCCGGAAACCAGTGGAGCGACTGGTTAAGGATGTGGCAGCTACAGCTACA
CCCACACCAGTGCTCAATACACAATCCACGCCCACTTACCAAAGATTCCC
GCAGCCCAGTGTGGATGGCAAAGTAGTGGCCATGTTCCGTCGACTGGGAA
CACACTCAGT
BO13629.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10108-PA | 1203 | phyl-RA | 1..785 | 17..801 | 3925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 245..1039 | 17..810 | 3950 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:34:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14428146..14428750 | 801..197 | 3025 | 100 | Minus |
| 2R | 25286936 | 2R | 14431908..14432093 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:34:57 has no hits.
BO13629.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:38 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-PA | 1..795 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:26 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10108-PA | 1..795 | 17..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:03:55 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1039 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:35 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 241..1039 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:35 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14428136..14428744 | 203..810 | 99 | <- | Minus |
| 2R | 14431908..14432097 | 9..202 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:03:55 Download gff for
BO13629.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315641..10316249 | 203..810 | 99 | <- | Minus |
| arm_2R | 10319413..10319602 | 9..202 | 97 | | Minus |
BO13629.complete Sequence
1234 bp assembled on 2006-10-11
GenBank Submission: FJ638716
> BO13629.complete
GAAGTTATCAGTCGACATGTCTACCAATCAGCAGCAGCAGGCGAATCCTT
CGGCGGCCGTTGCCGCACCCGCCGCCTCCTCGGAATACCTGAAACGCACC
TGCCTCATCTGCGGCTGCCACACCAACCAGACGATCAATATCTACGAGCC
CCGCTCCGGACCCAATATCGTTCAGCTAATCCAGGCGAAATTCAAGTTTC
AGCCCCTGAACGAGGACAAATTCCTCTGCTTTAGCTGCAACAACTGGCTG
ATCAACTGGCACTCCCTGCAGGCGGTCAACAGCAATGAGGCCGAAAGCCA
GAGCCAAAGTCCCTCGCACATGGGCAACAGTGTGCTGCAGCAGGAAAGGA
CGAAGCTCCGTCCGGTGGCGATGGTTCGACCCACGGTGCGAGTGCAGCCC
CAATCGCAGCCCCAACTGCAGCCCCAAGTTCCAATTAATCCCACACCCGC
ACCCATAGTCTATTCGAAGCGAAGAGCCAGCAGACGCAGTGCCTCCGTCA
GCCGGATGAGCCGAGTGCTGCGCCAGTGTTGTGTGGAGAGTCTGCGGCGG
AGTCCCAAGAAGCGCAATCAGCAGTCGGTGTTCGTCTGTCTTAGGCCGCA
GGGCCAGAAGAGGAGCAATGCGATCTGCAAGGTGGAGTGTGTGGCGCCGC
GCCGGAAACCAGTGGAGCGACTGGTTAAGGATGTGGCAGCTACAGCTACA
CCCACACCAGTGCTCAATACACAATCCACGCCCACTTACCAAAGATTCCC
GCAGCCCAGTGTGGATGGCAAAGTAGTGGCCATGTTCCGTCGACTGGGAA
CCACACTCAGTCGGGAAGAACCCGCCGCATATTCAGCAGAATCAAACCCC
GCCTGCTCGAAACTCCCGCAGATCATGAGTCCGCTCAAAGAGGCGCCGCG
CTGGACGCGGGACCTCGATGATGATGAGATACTGCTGGAATTCGATACCG
CCATATCCGAAGTCCTGCCAACTGCCCGCTATCAGGTTACCCACGAGGAG
AACAAGGAAAACCAGCAGGCACAAGAAATGGAGCTGGAGCTGGAGGAGGA
GGAAGAAGTGGATGGCCGAGCGGAACTGGAAGTGGTGCAGGAGGCGGAAG
CGCCACTGGAACCGCAGAGCCACCACAAACAAGGAAACAGCCACCAAAAT
TCCCACCAAGCTTCAATCCAACTCGCTGGCCTGCGATTACCAATGGGCCT
TAGCATTAGCCTCGTCGCAAGCTTTCTAGACCAT
BO13629.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1203 | CG10108-PA | 1..1200 | 17..1216 | 6000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:29:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-RA | 1839 | CG10108-RA | 245..1444 | 17..1216 | 6000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:29:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14427731..14428750 | 1216..197 | 5100 | 100 | Minus |
| 2R | 25286936 | 2R | 14431908..14432093 | 202..17 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:29:51 has no hits.
BO13629.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:55 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 1..1203 | 17..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:58 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 239..1445 | 9..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:15 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 245..1444 | 17..1218 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:55 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 239..1445 | 9..1220 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:09:17 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| phyl-RA | 245..1444 | 17..1218 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:09:17 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14427729..14428744 | 203..1218 | 99 | <- | Minus |
| 2R | 14431908..14432093 | 17..202 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:15 Download gff for
BO13629.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10315234..10316249 | 203..1218 | 99 | <- | Minus |
| arm_2R | 10319413..10319598 | 17..202 | 100 | | Minus |
BO13629.pep Sequence
Translation from 16 to 1234
> BO13629.pep
MSTNQQQQANPSAAVAAPAASSEYLKRTCLICGCHTNQTINIYEPRSGPN
IVQLIQAKFKFQPLNEDKFLCFSCNNWLINWHSLQAVNSNEAESQSQSPS
HMGNSVLQQERTKLRPVAMVRPTVRVQPQSQPQLQPQVPINPTPAPIVYS
KRRASRRSASVSRMSRVLRQCCVESLRRSPKKRNQQSVFVCLRPQGQKRS
NAICKVECVAPRRKPVERLVKDVAATATPTPVLNTQSTPTYQRFPQPSVD
GKVVAMFRRLGTTLSREEPAAYSAESNPACSKLPQIMSPLKEAPRWTRDL
DDDEILLEFDTAISEVLPTARYQVTHEENKENQQAQEMELELEEEEEVDG
RAELEVVQEAEAPLEPQSHHKQGNSHQNSHQASIQLAGLRLPMGLSISLV
ASFLDH
BO13629.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| phyl-PA | 400 | CG10108-PA | 1..400 | 1..400 | 2065 | 100 | Plus |
