Clone Sequence Records
BO13630.3prime Sequence
787 bp (718 high quality bases) assembled on 2006-05-08
> BO13630.3prime
ATGGTCTAGAAAGCTTGCATGTATCGCCCCAGCTATCCGCTCCGCTTCGG
AGGCGGTGGCGCTGGCCTCACTAATTCGCTTGTTGCCCCAGCACCGGTTG
TACAGATAAATGCCCAGCAGGGGCAGCGGCGTCATCACGGCCACCGATAC
GGGCACCACCGTGGTGATGTCCGCCTCCGGCGATTCCAGCGTGGTCGTCA
GCAGGAAGATGGCGATGCCCGTGTTCTGGATGCCCGTCTCGATGGCGATG
GTCAGGGCGTCGGCTGCATTTTGGTGCAGCAGCTTGGCTGCCAGGAAGGC
GAAGATGTAGCCCAGACCAGGCAGAGCCATGCCAGCGACGACGATCTGCC
AGGAGAACAAATAGAACAGGTAAAAGTTGTTGATGATCGCGAACACGATG
ATGAACAGGATGATGAAGGCGGAGACGGGCTTGAGCAGGCGGACCAGCAC
CCTAGCGACCTGAGGCATTCTCTTCTGGACGAGCAGCCCGAGCAGGAGCG
GAAGGACCAGGCTGCTGCTGTACGAGGCGATTTTGCCGTAAGGCACCTTG
ATGCCCGCTCGCTCGAAGATCAGCTGGCCAAGTGTTATGGTCCACAGCGG
TATGGTGGCGAAGGCAGCAACATTAGAAACGGTGGTCATTAGCACCGAGA
GGTGTATATTACCGCCGAGAACGGCAGACCAGGTGTTCGATGCCCCACCG
CTGGGCGAGATGCCGGTGAAGAAGAGACCCAGCTGCATGGCCGGCGCCTG
AGGGAAGATGAAAACGCCGAGGGCGTAGCTGAGCAGA
BO13630.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 1368 | CG11655-RA | 597..1365 | 787..19 | 3795 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 701..1469 | 787..19 | 3815 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15454171..15454612 | 787..346 | 2180 | 99.5 | Minus |
| X | 23542271 | X | 15454971..15455300 | 348..19 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:21:15 has no hits.
BO13630.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:39 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 598..1368 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:27 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 598..1368 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:19 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 702..1476 | 10..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:51:49 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 702..1476 | 10..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:51:49 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15454172..15454612 | 346..786 | 99 | -> | Minus |
| X | 15454974..15455307 | 10..345 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:19 Download gff for
BO13630.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15348205..15348645 | 346..786 | 99 | -> | Minus |
| arm_X | 15349007..15349340 | 10..345 | 98 | | Minus |
BO13630.5prime Sequence
948 bp (773 high quality bases) assembled on 2006-05-08
> BO13630.5prime
GAAGTTATCAGTCGACATGTCTCCGCACGGACGTCCTGGTTGGGAATGGA
GCTACCTCCTGCTCACCCTGGCCGTGGGATTCGCATCCACCCACGGGTGG
ATGGCCCACTTTCGCCCAGCTGCGCTCACGTTGCAGATGGAGCGCGGGGA
TCGGGTGCAGCTCAAGCTGGAGAATGTGGCACCTTCCACGCTGCAGCAGC
CGACGCGTTACCACTTCCGCCTGGAAAGTGTGGACACGGATTTGGCCAGT
GTTCCAGGCGAGAATGCCACGATATCCCTGGATGTATTCAACACGGACAC
ACGCGACTGGACGGGTGACATCGTAGTTAATGGCCATTTTCTGGGACAGA
CCAAGATCCAAGTGAAGCTGTACGACAGCCAGCGAAACACCAGTGAACTG
CCCACCAATTGGAGCAACGACAGCACGCTGGACGTGAAGATCAAGCGACC
GAAACGTGTGGTGGATGACATATTCCTGGGTACGATCATACTACTAATGT
CGCTGCTGTACATCAGCTTTGGAGCCGCCCTAAATCTGGACGTGCTGAGG
GGTCTGATCACCCGGCCAACCGGCCCGTGCATCGGATTTGTGATGCAGGT
GGTGGGCATGCCTCTGCTCAGCTACGCCCTCGGCGTCTTCATCTTCCCCC
AGGCGCCGGCCATGCAGCTGGGTCTCTTCTTCACCGGCATCTCGCCCAGC
GGTGGGGCATCGAACACCTGGTCTGCCGTTCTCGGCGGTAATATACACCT
CTCGGTGCTAATGACCACCGTTTCTAATGTTGCTGCCTTCGCCACCATAC
CGCTGTGGACCATAACACTTTGGCAGCTGATCTTCGAGCGAGCGGGCATC
AAGGTGCCTTACGGCAAAATCGCCTCCTACAGCAGCAGCCTGGTCCTTCC
GCTCCTGCTCGGGCTGCTCGTCCAAAAAAAAAGCCTCAGGTCGCTAGG
BO13630.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 1368 | CG11655-RA | 1..908 | 17..924 | 4465 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 105..1037 | 17..948 | 4550 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:44:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15453575..15454507 | 17..948 | 4525 | 99.2 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:44:25 has no hits.
BO13630.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:40 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 1..933 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:29 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-PA | 1..933 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:47:37 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1037 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:09 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1037 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:09 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15453575..15454507 | 17..948 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:47:37 Download gff for
BO13630.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15347608..15348540 | 17..948 | 99 | | Plus |
BO13630.complete Sequence
1399 bp assembled on 2006-10-11
GenBank Submission: FJ632871
> BO13630.complete
GAAGTTATCAGTCGACATGTCTCCGCACGGACGTCCTGGTTGGGAATGGA
GCTACCTCCTGCTCACCCTGGCCGTGGGATTCGCATCCACCCACGGGTGG
ATGGCCCACTTTCGCCCAGCTGCGCTCACGTTGCAGATGGAGCGCGGGGA
TCGGGTGCAGCTCAAGCTGGAGAATGTGGCACCTTCCACGCTGCAGCAGC
CGACGCGTTACCACTTCCGCCTGGAAAGTGTGGACACGGATTTGGCCAGT
GTTCCAGGCGAGAATGCCACGATATCCCTGGATGTATTCAACACGGACAC
ACGCGACTGGACGGGTGACATCGTAGTTAATGGCCATTTTCTGGGACAGA
CCAAGATCCAAGTGAAGCTGTACGACAGCCAGCGAAACACCAGTGAACTG
CCCACCAATTGGAGCAACGACAGCACGCTGGACGTGAAGATCAAGCGACC
GAAACGTGTGGTGGATGACATATTCCTGGGTACGATCATACTACTAATGT
CGCTGCTGTACATCAGCTTTGGAGCCGCCCTAAATCTGGACGTGCTGAGG
GGTCTGATCACCCGGCCAACCGGCCCGTGCATCGGATTTGTGATGCAGGT
GGTGGGCATGCCTCTGCTCAGCTACGCCCTCGGCGTCTTCATCTTCCCCC
AGGCGCCGGCCATGCAGCTGGGTCTCTTCTTCACCGGCATCTCGCCCAGC
GGTGGGGCATCGAACACCTGGTCTGCCGTTCTCGGCGGTAATATACACCT
CTCGGTGCTAATGACCACCGTTTCTAATGTTGCTGCCTTCGCCACCATAC
CGCTGTGGACCATAACACTTGGCCAGCTGATCTTCGAGCGAGCGGGCATC
AAGGTGCCTTACGGCAAAATCGCCTCGTACAGCAGCAGCCTGGTCCTTCC
GCTCCTGCTCGGGCTGCTCGTCCAGAAGAGAATGCCTCAGGTCGCTAGGG
TGCTGGTCCGCCTGCTCAAGCCCGTCTCCGCCTTCATCATCCTGTTCATC
ATCGTGTTCGCGATCATCAACAACTTTTACCTGTTCTATTTGTTCTCCTG
GCAGATCGTCGTCGCTGGCATGGCTCTGCCTGGTCTGGGCTACATCTTCG
CCTTCCTGGCAGCCAAGCTGCTGCACCAAAATGCAGCCGACGCCCTGACC
ATCGCCATCGAGACGGGCATCCAGAACACGGGCATCGCCATCTTCCTGCT
GACGACCACGCTGGAATCGCCGGAGGCGGACATCACCACGGTGGTGCCCG
TATCGGTGGCCGTGATGACGCCGCTGCCCCTGCTGGGCATTTATCTGTAC
AACCGGTGCTGGGGCAACAAGCGAATTAGTGAGGCCAGCGCCACCGCCTC
CGAAGCGGAGCGGATAGCTGGGGCGATACATGCAAGCTTTCTAGACCAT
BO13630.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:44:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1368 | CG11655-PA | 1..1365 | 17..1381 | 6825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:44:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-RA | 1720 | CG11655-RA | 105..1469 | 17..1381 | 6825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:44:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15453575..15454612 | 17..1054 | 5190 | 100 | Plus |
| X | 23542271 | X | 15454971..15455300 | 1052..1381 | 1650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:44:15 has no hits.
BO13630.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:56 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 1..1368 | 17..1382 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:00 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 91..1462 | 17..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:10:54 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1469 | 17..1383 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:56 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 91..1462 | 17..1390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:12 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11655-RA | 105..1469 | 17..1383 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:12 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15454974..15455300 | 1055..1383 | 99 | | Plus |
| X | 15453575..15454612 | 17..1054 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:10:54 Download gff for
BO13630.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15347608..15348645 | 17..1054 | 100 | -> | Plus |
| arm_X | 15349007..15349333 | 1055..1383 | 99 | | Plus |
BO13630.pep Sequence
Translation from 16 to 1399
> BO13630.pep
MSPHGRPGWEWSYLLLTLAVGFASTHGWMAHFRPAALTLQMERGDRVQLK
LENVAPSTLQQPTRYHFRLESVDTDLASVPGENATISLDVFNTDTRDWTG
DIVVNGHFLGQTKIQVKLYDSQRNTSELPTNWSNDSTLDVKIKRPKRVVD
DIFLGTIILLMSLLYISFGAALNLDVLRGLITRPTGPCIGFVMQVVGMPL
LSYALGVFIFPQAPAMQLGLFFTGISPSGGASNTWSAVLGGNIHLSVLMT
TVSNVAAFATIPLWTITLGQLIFERAGIKVPYGKIASYSSSLVLPLLLGL
LVQKRMPQVARVLVRLLKPVSAFIILFIIVFAIINNFYLFYLFSWQIVVA
GMALPGLGYIFAFLAAKLLHQNAADALTIAIETGIQNTGIAIFLLTTTLE
SPEADITTVVPVSVAVMTPLPLLGIYLYNRCWGNKRISEASATASEAERI
AGAIHASFLDH
BO13630.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11655-PA | 455 | CG11655-PA | 1..455 | 1..455 | 2316 | 100 | Plus |
| CG9903-PA | 454 | CG9903-PA | 37..440 | 28..442 | 555 | 31.7 | Plus |
