Clone Sequence Records
BO13632.3prime Sequence
844 bp (760 high quality bases) assembled on 2006-05-08
> BO13632.3prime
ATGGTCTAGAAAGCTTGCAAAAGTCTTTCTGTGCACGGCTTTCTGTCCCT
CCTCCTCGTATTCCCGCTTCGAGATCCACATCTTCTTGAAAGTATCGAGC
GAGGCTAAAATCGATCCGCCCATCCATGTGGAGTACAGACGTTCCTGCGG
CGCAGCGATCCTGATCTTGAGATCCTTAGCCGAGTGTTTCTTCAGTTCGG
ACAACAGACGGTCGCCGAATCCTTTGAAGAGCGTTGATCCGCCGGACAGC
ACGATGTTCTGGTAGAGCATTTTCCTGAGATCCATATCTGACTTCTCGAT
GGAGTACATCAGAACGTCGTGAATGCCCTCACATTCCTCGCCCAGCAGAT
CGGGCCGGAAGAGCACCTCCGGCGCCCTGAAGCGTGCAGGTCCAATCTCA
AAGATCTTGCCGTCGGGCAGCTTGTAGGCAAACTTCTCGGTTTCCACGGT
CTCCTCCTTCTGCGGATTGGTGGCCAGATAGCAGACCTTCTCCTTGATGG
AGCGCACAATCTCAAATTCGGCAGTCGACCGGAAGTTAAAGCCCTCCCGG
CGGATGAGTGTCTTCAGGTAGCGCGTCACATCGCGCCCGGCGATGTCCAC
GCGCATAATACTGTGAGGCATGGCGAATCCCTCGTAGATAGGAACCGCAT
GCGTCACACCGTCGCCGGAGTCGAGCACTACGCCAGTCACACGACCGGTG
GCGTAGAGACTGAGCACCGCCTGCATGGACACAAAGAGCGCAGGTGCATT
GATGCCTTCAAAGAAGAACTCGGCTGCCTTTTCGCGGTTTCGGCGCGGAT
TAAGCGGGGCCTCGGTCAGCAGCACGGGATGATCCTCCGTGAAG
BO13632.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6174-PA | 1131 | Arp87C-RA | 303..1128 | 844..19 | 4130 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 382..1207 | 844..19 | 4130 | 100 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 837..564 | 190 | 72.2 | Minus |
Act87E-RB | 1643 | CG18290-RB | 455..728 | 837..564 | 190 | 72.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693215..12693761 | 706..160 | 2735 | 100 | Minus |
3R | 32079331 | 3R | 12693829..12693970 | 160..19 | 710 | 100 | Minus |
3R | 32079331 | 3R | 12693018..12693155 | 844..707 | 690 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:21:53 has no hits.
BO13632.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:43 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 303..1131 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:33 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 303..1131 | 18..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:37 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 382..1211 | 13..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:04 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 382..1211 | 13..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:04 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12693830..12693974 | 13..159 | 97 | | Minus |
3R | 12693018..12693155 | 707..844 | 100 | -> | Minus |
3R | 12693215..12693761 | 160..706 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:37 Download gff for
BO13632.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8518740..8518877 | 707..844 | 100 | -> | Minus |
arm_3R | 8518937..8519483 | 160..706 | 100 | -> | Minus |
arm_3R | 8519552..8519696 | 13..159 | 97 | | Minus |
BO13632.5prime Sequence
841 bp (702 high quality bases) assembled on 2006-05-08
> BO13632.5prime
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGATTGTGAGGGCATT
BO13632.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6174-PA | 1131 | Arp87C-RA | 1..825 | 17..841 | 4100 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 80..904 | 17..841 | 4110 | 99.9 | Plus |
CG31347-RA | 865 | CG31347-RA | 728..776 | 65..17 | 245 | 100 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 326..599 | 190 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693215..12693599 | 457..841 | 1910 | 99.7 | Plus |
3R | 32079331 | 3R | 12692770..12692945 | 130..305 | 880 | 100 | Plus |
3R | 32079331 | 3R | 12693004..12693155 | 305..456 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12692643..12692707 | 65..129 | 325 | 100 | Plus |
3R | 32079331 | 3R | 12691822..12691870 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 02:13:25 has no hits.
BO13632.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:44 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:34 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6174-PA | 1..825 | 17..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:48 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..904 | 9..841 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:25 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 74..904 | 9..841 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:25 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12691816..12691869 | 9..64 | 92 | -> | Plus |
3R | 12692643..12692707 | 65..129 | 100 | -> | Plus |
3R | 12692770..12692944 | 130..304 | 100 | -> | Plus |
3R | 12693004..12693155 | 305..456 | 100 | -> | Plus |
3R | 12693215..12693599 | 457..841 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:48 Download gff for
BO13632.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8517538..8517591 | 9..64 | 92 | -> | Plus |
arm_3R | 8518365..8518429 | 65..129 | 100 | -> | Plus |
arm_3R | 8518492..8518666 | 130..304 | 100 | -> | Plus |
arm_3R | 8518726..8518877 | 305..456 | 100 | -> | Plus |
arm_3R | 8518937..8519321 | 457..841 | 99 | | Plus |
BO13632.complete Sequence
1162 bp assembled on 2006-10-11
GenBank Submission: FJ632872
> BO13632.complete
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTT
CTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTA
CCAGAACATCGTGCTGTCCGGCGGATCAACGCTCTTCAAAGGATTCGGCG
ACCGTCTGTTGTCCGAACTGAAGAAACACTCGGCTAAGGATCTCAAGATC
AGGATCGCTGCGCCGCAGGAACGTCTGTACTCCACATGGATGGGCGGATC
GATTTTAGCCTCGCTCGATACTTTCAAGAAGATGTGGATCTCGAAGCGGG
AATACGAGGAGGAGGGACAGAAAGCCGTGCACAGAAAGACTTTTGCAAGC
TTTCTAGACCAT
BO13632.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1131 | CG6174-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Act87E-RC | 1131 | CG18290-PC | 298..571 | 326..599 | 185 | 71.2 | Plus |
Act87E-RB | 1131 | CG18290-PB | 298..571 | 326..599 | 185 | 71.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-RA | 1469 | CG6174-RA | 80..1207 | 17..1144 | 5640 | 100 | Plus |
CG31347-RA | 865 | CG31347-RA | 728..776 | 65..17 | 245 | 100 | Minus |
Act87E-RC | 1853 | CG18290-RC | 379..652 | 326..599 | 185 | 71.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12693215..12693761 | 457..1003 | 2735 | 100 | Plus |
3R | 32079331 | 3R | 12692770..12692945 | 130..305 | 880 | 100 | Plus |
3R | 32079331 | 3R | 12693004..12693155 | 305..456 | 760 | 100 | Plus |
3R | 32079331 | 3R | 12693829..12693970 | 1003..1144 | 710 | 100 | Plus |
3R | 32079331 | 3R | 12692643..12692707 | 65..129 | 325 | 100 | Plus |
3R | 32079331 | 3R | 12691822..12691870 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:41:31 has no hits.
BO13632.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:57 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp87C-RA | 1..1131 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:02 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp87C-RA | 81..1218 | 9..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:33 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 80..1207 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:57 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp87C-RA | 81..1218 | 9..1150 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:19 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Arp1-RA | 80..1207 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:19 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12693004..12693155 | 305..456 | 100 | -> | Plus |
3R | 12691822..12691869 | 17..64 | 100 | -> | Plus |
3R | 12692643..12692707 | 65..129 | 100 | -> | Plus |
3R | 12692770..12692944 | 130..304 | 100 | -> | Plus |
3R | 12693215..12693761 | 457..1003 | 100 | -> | Plus |
3R | 12693830..12693970 | 1004..1146 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:33 Download gff for
BO13632.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8517544..8517591 | 17..64 | 100 | -> | Plus |
arm_3R | 8518365..8518429 | 65..129 | 100 | -> | Plus |
arm_3R | 8518492..8518666 | 130..304 | 100 | -> | Plus |
arm_3R | 8518726..8518877 | 305..456 | 100 | -> | Plus |
arm_3R | 8518937..8519483 | 457..1003 | 100 | -> | Plus |
arm_3R | 8519552..8519692 | 1004..1146 | 98 | | Plus |
BO13632.pep Sequence
Translation from 16 to 1162
> BO13632.pep
MEPYDVVVNQPVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAG
ALEGDIFVGPKAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLA
TFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYAT
GRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRR
EGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFE
IGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVL
SGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASL
DTFKKMWISKREYEEEGQKAVHRKTFASFLDH
BO13632.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Arp1-PA | 376 | CG6174-PA | 1..376 | 1..376 | 1961 | 100 | Plus |
Act87E-PC | 376 | CG18290-PC | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act87E-PB | 376 | CG18290-PB | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act87E-PA | 376 | CG18290-PA | 9..376 | 12..376 | 1084 | 54.6 | Plus |
Act88F-PA | 376 | CG5178-PA | 9..376 | 12..376 | 1083 | 54.9 | Plus |