Clone BO13632 Report

Search the DGRC for BO13632

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:32
Vector:pDNR-Dual
Associated Gene/TranscriptArp87C-RA
Protein status:BO13632.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO13632.3prime Sequence

844 bp (760 high quality bases) assembled on 2006-05-08

> BO13632.3prime
ATGGTCTAGAAAGCTTGCAAAAGTCTTTCTGTGCACGGCTTTCTGTCCCT
CCTCCTCGTATTCCCGCTTCGAGATCCACATCTTCTTGAAAGTATCGAGC
GAGGCTAAAATCGATCCGCCCATCCATGTGGAGTACAGACGTTCCTGCGG
CGCAGCGATCCTGATCTTGAGATCCTTAGCCGAGTGTTTCTTCAGTTCGG
ACAACAGACGGTCGCCGAATCCTTTGAAGAGCGTTGATCCGCCGGACAGC
ACGATGTTCTGGTAGAGCATTTTCCTGAGATCCATATCTGACTTCTCGAT
GGAGTACATCAGAACGTCGTGAATGCCCTCACATTCCTCGCCCAGCAGAT
CGGGCCGGAAGAGCACCTCCGGCGCCCTGAAGCGTGCAGGTCCAATCTCA
AAGATCTTGCCGTCGGGCAGCTTGTAGGCAAACTTCTCGGTTTCCACGGT
CTCCTCCTTCTGCGGATTGGTGGCCAGATAGCAGACCTTCTCCTTGATGG
AGCGCACAATCTCAAATTCGGCAGTCGACCGGAAGTTAAAGCCCTCCCGG
CGGATGAGTGTCTTCAGGTAGCGCGTCACATCGCGCCCGGCGATGTCCAC
GCGCATAATACTGTGAGGCATGGCGAATCCCTCGTAGATAGGAACCGCAT
GCGTCACACCGTCGCCGGAGTCGAGCACTACGCCAGTCACACGACCGGTG
GCGTAGAGACTGAGCACCGCCTGCATGGACACAAAGAGCGCAGGTGCATT
GATGCCTTCAAAGAAGAACTCGGCTGCCTTTTCGCGGTTTCGGCGCGGAT
TAAGCGGGGCCTCGGTCAGCAGCACGGGATGATCCTCCGTGAAG

BO13632.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6174-PA 1131 Arp87C-RA 303..1128 844..19 4130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 382..1207 844..19 4130 100 Minus
Act87E-RC 1853 CG18290-RC 379..652 837..564 190 72.2 Minus
Act87E-RB 1643 CG18290-RB 455..728 837..564 190 72.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693215..12693761 706..160 2735 100 Minus
3R 32079331 3R 12693829..12693970 160..19 710 100 Minus
3R 32079331 3R 12693018..12693155 844..707 690 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:21:53 has no hits.

BO13632.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:43 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 303..1131 18..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:33 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 303..1131 18..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:37 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 382..1211 13..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:53:04 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 382..1211 13..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:53:04 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12693830..12693974 13..159 97   Minus
3R 12693018..12693155 707..844 100 -> Minus
3R 12693215..12693761 160..706 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:37 Download gff for BO13632.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8518740..8518877 707..844 100 -> Minus
arm_3R 8518937..8519483 160..706 100 -> Minus
arm_3R 8519552..8519696 13..159 97   Minus

BO13632.5prime Sequence

841 bp (702 high quality bases) assembled on 2006-05-08

> BO13632.5prime
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGATTGTGAGGGCATT

BO13632.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6174-PA 1131 Arp87C-RA 1..825 17..841 4100 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:13:27
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 80..904 17..841 4110 99.9 Plus
CG31347-RA 865 CG31347-RA 728..776 65..17 245 100 Minus
Act87E-RC 1853 CG18290-RC 379..652 326..599 190 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:13:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693215..12693599 457..841 1910 99.7 Plus
3R 32079331 3R 12692770..12692945 130..305 880 100 Plus
3R 32079331 3R 12693004..12693155 305..456 760 100 Plus
3R 32079331 3R 12692643..12692707 65..129 325 100 Plus
3R 32079331 3R 12691822..12691870 17..65 245 100 Plus
Blast to na_te.dros performed on 2015-02-13 02:13:25 has no hits.

BO13632.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:44 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:34 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6174-PA 1..825 17..841 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:08:48 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..904 9..841 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:41:25 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 74..904 9..841 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:41:25 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12691816..12691869 9..64 92 -> Plus
3R 12692643..12692707 65..129 100 -> Plus
3R 12692770..12692944 130..304 100 -> Plus
3R 12693004..12693155 305..456 100 -> Plus
3R 12693215..12693599 457..841 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:08:48 Download gff for BO13632.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8517538..8517591 9..64 92 -> Plus
arm_3R 8518365..8518429 65..129 100 -> Plus
arm_3R 8518492..8518666 130..304 100 -> Plus
arm_3R 8518726..8518877 305..456 100 -> Plus
arm_3R 8518937..8519321 457..841 99   Plus

BO13632.complete Sequence

1162 bp assembled on 2006-10-11

GenBank Submission: FJ632872

> BO13632.complete
GAAGTTATCAGTCGACATGGAGCCTTATGATGTCGTCGTCAACCAGCCCG
TCGTCATAGATAACGGCTCCGGTGTGATCAAAGCCGGCTTTGCTGGTGAG
CACATTCCAAAATGCAGGTTTCCCAATTACATTGGCCGGCCCAAGCATGT
CCGAGTGATGGCTGGTGCGCTGGAGGGCGACATATTCGTTGGACCCAAGG
CGGAGGAGCACCGTGGCCTGCTTAGCATCCGGTACCCCATGGAGCACGGC
ATTGTCACCGACTGGAATGACATGGAGCGGATATGGAGCTACATTTACAG
CAAAGAACAACTGGCCACCTTCACGGAGGATCATCCCGTGCTGCTGACCG
AGGCCCCGCTTAATCCGCGCCGAAACCGCGAAAAGGCAGCCGAGTTCTTC
TTTGAAGGCATCAATGCACCTGCGCTCTTTGTGTCCATGCAGGCGGTGCT
CAGTCTCTACGCCACCGGTCGTGTGACTGGCGTAGTGCTCGACTCCGGCG
ACGGTGTGACGCATGCGGTTCCTATCTACGAGGGATTCGCCATGCCTCAC
AGTATTATGCGCGTGGACATCGCCGGGCGCGATGTGACGCGCTACCTGAA
GACACTCATCCGCCGGGAGGGCTTTAACTTCCGGTCGACTGCCGAATTTG
AGATTGTGCGCTCCATCAAGGAGAAGGTCTGCTATCTGGCCACCAATCCG
CAGAAGGAGGAGACCGTGGAAACCGAGAAGTTTGCCTACAAGCTGCCCGA
CGGCAAGATCTTTGAGATTGGACCTGCACGCTTCAGGGCGCCGGAGGTGC
TCTTCCGGCCCGATCTGCTGGGCGAGGAATGTGAGGGCATTCACGACGTT
CTGATGTACTCCATCGAGAAGTCAGATATGGATCTCAGGAAAATGCTCTA
CCAGAACATCGTGCTGTCCGGCGGATCAACGCTCTTCAAAGGATTCGGCG
ACCGTCTGTTGTCCGAACTGAAGAAACACTCGGCTAAGGATCTCAAGATC
AGGATCGCTGCGCCGCAGGAACGTCTGTACTCCACATGGATGGGCGGATC
GATTTTAGCCTCGCTCGATACTTTCAAGAAGATGTGGATCTCGAAGCGGG
AATACGAGGAGGAGGGACAGAAAGCCGTGCACAGAAAGACTTTTGCAAGC
TTTCTAGACCAT

BO13632.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1131 CG6174-PA 1..1128 17..1144 5640 100 Plus
Act87E-RC 1131 CG18290-PC 298..571 326..599 185 71.2 Plus
Act87E-RB 1131 CG18290-PB 298..571 326..599 185 71.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:34
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-RA 1469 CG6174-RA 80..1207 17..1144 5640 100 Plus
CG31347-RA 865 CG31347-RA 728..776 65..17 245 100 Minus
Act87E-RC 1853 CG18290-RC 379..652 326..599 185 71.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12693215..12693761 457..1003 2735 100 Plus
3R 32079331 3R 12692770..12692945 130..305 880 100 Plus
3R 32079331 3R 12693004..12693155 305..456 760 100 Plus
3R 32079331 3R 12693829..12693970 1003..1144 710 100 Plus
3R 32079331 3R 12692643..12692707 65..129 325 100 Plus
3R 32079331 3R 12691822..12691870 17..65 245 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:41:31 has no hits.

BO13632.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:57 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
Arp87C-RA 1..1131 17..1145 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:00:02 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
Arp87C-RA 81..1218 9..1150 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:33 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 80..1207 17..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:57 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
Arp87C-RA 81..1218 9..1150 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:19 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
Arp1-RA 80..1207 17..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:19 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12693004..12693155 305..456 100 -> Plus
3R 12691822..12691869 17..64 100 -> Plus
3R 12692643..12692707 65..129 100 -> Plus
3R 12692770..12692944 130..304 100 -> Plus
3R 12693215..12693761 457..1003 100 -> Plus
3R 12693830..12693970 1004..1146 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:33 Download gff for BO13632.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8517544..8517591 17..64 100 -> Plus
arm_3R 8518365..8518429 65..129 100 -> Plus
arm_3R 8518492..8518666 130..304 100 -> Plus
arm_3R 8518726..8518877 305..456 100 -> Plus
arm_3R 8518937..8519483 457..1003 100 -> Plus
arm_3R 8519552..8519692 1004..1146 98   Plus

BO13632.pep Sequence

Translation from 16 to 1162

> BO13632.pep
MEPYDVVVNQPVVIDNGSGVIKAGFAGEHIPKCRFPNYIGRPKHVRVMAG
ALEGDIFVGPKAEEHRGLLSIRYPMEHGIVTDWNDMERIWSYIYSKEQLA
TFTEDHPVLLTEAPLNPRRNREKAAEFFFEGINAPALFVSMQAVLSLYAT
GRVTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVTRYLKTLIRR
EGFNFRSTAEFEIVRSIKEKVCYLATNPQKEETVETEKFAYKLPDGKIFE
IGPARFRAPEVLFRPDLLGEECEGIHDVLMYSIEKSDMDLRKMLYQNIVL
SGGSTLFKGFGDRLLSELKKHSAKDLKIRIAAPQERLYSTWMGGSILASL
DTFKKMWISKREYEEEGQKAVHRKTFASFLDH

BO13632.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:03:32
Subject Length Description Subject Range Query Range Score Percent Strand
Arp1-PA 376 CG6174-PA 1..376 1..376 1961 100 Plus
Act87E-PC 376 CG18290-PC 9..376 12..376 1084 54.6 Plus
Act87E-PB 376 CG18290-PB 9..376 12..376 1084 54.6 Plus
Act87E-PA 376 CG18290-PA 9..376 12..376 1084 54.6 Plus
Act88F-PA 376 CG5178-PA 9..376 12..376 1083 54.9 Plus