Clone BO13633 Report

Search the DGRC for BO13633

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptRpL7-RA
Protein status:BO13633.pep: validated full length
Sequenced Size:790

Clone Sequence Records

BO13633.3prime Sequence

761 bp (758 high quality bases) assembled on 2006-05-08

> BO13633.3prime
ATGGTCTAGAAAGCTTGCGACCATCTTGCGCAGCAGACGGTTGATCTGGT
CCTCGCGGTTGCCGAAGTCACCACCGTTGACATAATGGTTGGCCTTCTTG
CGCCAGCCGCCGGTGGGGGTGTTTAGCTTGAAGGGCCACAGGAAGTTGGA
GGCGTACTTGAAGTTGGGCCCCACGGTGAAGATCTCATGGACAAGATCCT
CGACGCACTGAATTTGGTGCGCCTGACGCAGCTTCCGCTCGATCACGAAG
TTATCGGTGATGGGCACGCGCTGGCGGTTATGCTTCACGAATCCACGCTT
GTAGATCAGCTCCCGCACGGACTTCAGATTGGGATAGCCCCAGGTGATGT
AGGGCTCGGCGATGCGCAGCATGTTGATGGTGGCCTTGTTCAGCTTGATG
AACACACCGTTGTTGATCTGCCTCAGACGGAACAGCTGCAGAACCTTGCG
GACCTTGGGAGCCACCTTGTTGATACCGCGGATACGGACGACAAAGGCCA
ATTTGGCCTCGGCGGGCACGTAGAACTGGTTGCGCTTCTTGGCCAAGCGA
CGCAGCTTGATCTCGCGCTGTTCCGCCTTGATGTACTCATTCTGGTACTT
CTCGGCGCGGACCAGGTTCTCCTTCTTGCGCAGGGCAATCACGGCGGCCT
TCTTCAGGCGACGTTTCGACTCGGCGACTCGCTTGGAGATTTGTTTCTTG
CTGAACTTCAGCTTCGATTCCGGCACGGCGGGCAGCTTTTTCGCTGCTGG
CTTCTTGACGA

BO13633.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG4897-PA 759 RpL7-RA 14..756 761..19 3715 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:40:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 159..901 761..19 3715 100 Minus
RpL7-RA 895 CG4897-RA 63..805 761..19 3715 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201598..10202055 476..19 2290 100 Minus
2L 23513712 2L 10201243..10201528 761..476 1430 100 Minus
Blast to na_te.dros performed on 2015-02-02 19:40:11 has no hits.

BO13633.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:45 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-PA 15..759 15..760 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:35 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4897-PA 15..759 15..760 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:25 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 64..809 14..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:37 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 64..809 14..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:37 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10201244..10201528 476..760 100 -> Minus
2L 10201599..10202059 14..475 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:25 Download gff for BO13633.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201244..10201528 476..760 100 -> Minus
arm_2L 10201599..10202059 14..475 99   Minus

BO13633.5prime Sequence

788 bp (739 high quality bases) assembled on 2006-05-08

> BO13633.5prime
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATNCA
CCGTCTGCTGCGCAAGATGGTCGCAAGCTTTCTAGACC

BO13633.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG4897-PA 759 RpL7-RA 1..756 17..772 3736 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 146..901 17..772 3754 99.7 Plus
RpL7-RA 895 CG4897-RA 50..805 17..772 3754 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201598..10202055 315..772 2264 99.6 Plus
2L 23513712 2L 10201230..10201528 17..315 1495 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:52:29 has no hits.

BO13633.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:46 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-PA 1..759 17..776 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:37 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4897-PA 1..759 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:10 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 42..809 10..777 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:10 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 42..809 10..777 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:10 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10201225..10201528 9..315 98 -> Plus
2L 10201599..10202059 316..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:10 Download gff for BO13633.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201225..10201528 9..315 98 -> Plus
arm_2L 10201599..10202059 316..777 99   Plus

BO13633.complete Sequence

790 bp assembled on 2006-10-11

GenBank Submission: FJ632873

> BO13633.complete
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATCAA
CCGTCTGCTGCGCAAGATGGTCGCAAGCTTTCTAGACCAT

BO13633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:58
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 759 CG4897-PB 1..756 17..772 3780 100 Plus
RpL7-RA 759 CG4897-PA 1..756 17..772 3780 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-RB 1167 CG4897-RB 146..901 17..772 3780 100 Plus
RpL7-RA 895 CG4897-RA 50..805 17..772 3780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10201598..10202055 315..772 2290 100 Plus
2L 23513712 2L 10201230..10201528 17..315 1495 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:11:57 has no hits.

BO13633.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:53 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 1..759 17..776 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:50 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 41..808 10..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:12 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 50..805 17..774 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:53 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 41..808 10..777 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:59 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
RpL7-RA 50..805 17..774 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:59 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10201230..10201528 17..315 100 -> Plus
2L 10201599..10202055 316..774 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:12 Download gff for BO13633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10201230..10201528 17..315 100 -> Plus
arm_2L 10201599..10202055 316..774 99   Plus

BO13633.pep Sequence

Translation from 16 to 790

> BO13633.pep
MPAPVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRK
KENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG
INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNL
KSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFT
VGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRK
MVASFLDH

BO13633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
RpL7-PB 252 CG4897-PB 1..252 1..252 1294 100 Plus
RpL7-PA 252 CG4897-PA 1..252 1..252 1294 100 Plus
RpL7-like-PC 257 CG5317-PC 4..255 7..250 344 33.3 Plus
RpL7-like-PB 257 CG5317-PB 4..255 7..250 344 33.3 Plus
RpL7-like-PA 257 CG5317-PA 4..255 7..250 344 33.3 Plus