Clone Sequence Records
BO13633.3prime Sequence
761 bp (758 high quality bases) assembled on 2006-05-08
> BO13633.3prime
ATGGTCTAGAAAGCTTGCGACCATCTTGCGCAGCAGACGGTTGATCTGGT
CCTCGCGGTTGCCGAAGTCACCACCGTTGACATAATGGTTGGCCTTCTTG
CGCCAGCCGCCGGTGGGGGTGTTTAGCTTGAAGGGCCACAGGAAGTTGGA
GGCGTACTTGAAGTTGGGCCCCACGGTGAAGATCTCATGGACAAGATCCT
CGACGCACTGAATTTGGTGCGCCTGACGCAGCTTCCGCTCGATCACGAAG
TTATCGGTGATGGGCACGCGCTGGCGGTTATGCTTCACGAATCCACGCTT
GTAGATCAGCTCCCGCACGGACTTCAGATTGGGATAGCCCCAGGTGATGT
AGGGCTCGGCGATGCGCAGCATGTTGATGGTGGCCTTGTTCAGCTTGATG
AACACACCGTTGTTGATCTGCCTCAGACGGAACAGCTGCAGAACCTTGCG
GACCTTGGGAGCCACCTTGTTGATACCGCGGATACGGACGACAAAGGCCA
ATTTGGCCTCGGCGGGCACGTAGAACTGGTTGCGCTTCTTGGCCAAGCGA
CGCAGCTTGATCTCGCGCTGTTCCGCCTTGATGTACTCATTCTGGTACTT
CTCGGCGCGGACCAGGTTCTCCTTCTTGCGCAGGGCAATCACGGCGGCCT
TCTTCAGGCGACGTTTCGACTCGGCGACTCGCTTGGAGATTTGTTTCTTG
CTGAACTTCAGCTTCGATTCCGGCACGGCGGGCAGCTTTTTCGCTGCTGG
CTTCTTGACGA
BO13633.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4897-PA | 759 | RpL7-RA | 14..756 | 761..19 | 3715 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:40:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 159..901 | 761..19 | 3715 | 100 | Minus |
RpL7-RA | 895 | CG4897-RA | 63..805 | 761..19 | 3715 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201598..10202055 | 476..19 | 2290 | 100 | Minus |
2L | 23513712 | 2L | 10201243..10201528 | 761..476 | 1430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 19:40:11 has no hits.
BO13633.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:45 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-PA | 15..759 | 15..760 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:35 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4897-PA | 15..759 | 15..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:25 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 64..809 | 14..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:37 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 64..809 | 14..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:37 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201244..10201528 | 476..760 | 100 | -> | Minus |
2L | 10201599..10202059 | 14..475 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:25 Download gff for
BO13633.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201244..10201528 | 476..760 | 100 | -> | Minus |
arm_2L | 10201599..10202059 | 14..475 | 99 | | Minus |
BO13633.5prime Sequence
788 bp (739 high quality bases) assembled on 2006-05-08
> BO13633.5prime
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATNCA
CCGTCTGCTGCGCAAGATGGTCGCAAGCTTTCTAGACC
BO13633.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4897-PA | 759 | RpL7-RA | 1..756 | 17..772 | 3736 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:52:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 146..901 | 17..772 | 3754 | 99.7 | Plus |
RpL7-RA | 895 | CG4897-RA | 50..805 | 17..772 | 3754 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:52:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201598..10202055 | 315..772 | 2264 | 99.6 | Plus |
2L | 23513712 | 2L | 10201230..10201528 | 17..315 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:52:29 has no hits.
BO13633.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:46 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:37 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4897-PA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:10 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 42..809 | 10..777 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:08:10 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 42..809 | 10..777 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:08:10 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201225..10201528 | 9..315 | 98 | -> | Plus |
2L | 10201599..10202059 | 316..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:10 Download gff for
BO13633.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201225..10201528 | 9..315 | 98 | -> | Plus |
arm_2L | 10201599..10202059 | 316..777 | 99 | | Plus |
BO13633.complete Sequence
790 bp assembled on 2006-10-11
GenBank Submission: FJ632873
> BO13633.complete
GAAGTTATCAGTCGACATGCCTGCTCCGGTCGTCAAGAAGCCAGCAGCGA
AAAAGCTGCCCGCCGTGCCGGAATCGAAGCTGAAGTTCAGCAAGAAACAA
ATCTCCAAGCGAGTCGCCGAGTCGAAACGTCGCCTGAAGAAGGCCGCCGT
GATTGCCCTGCGCAAGAAGGAGAACCTGGTCCGCGCCGAGAAGTACCAGA
ATGAGTACATCAAGGCGGAACAGCGCGAGATCAAGCTGCGTCGCTTGGCC
AAGAAGCGCAACCAGTTCTACGTGCCCGCCGAGGCCAAATTGGCCTTTGT
CGTCCGTATCCGCGGTATCAACAAGGTGGCTCCCAAGGTCCGCAAGGTTC
TGCAGCTGTTCCGTCTGAGGCAGATCAACAACGGTGTGTTCATCAAGCTG
AACAAGGCCACCATCAACATGCTGCGCATCGCCGAGCCCTACATCACCTG
GGGCTATCCCAATCTGAAGTCCGTGCGGGAGCTGATCTACAAGCGTGGAT
TCGTGAAGCATAACCGCCAGCGCGTGCCCATCACCGATAACTTCGTGATC
GAGCGGAAGCTGCGTCAGGCGCACCAAATTCAGTGCGTCGAGGATCTTGT
CCATGAGATCTTCACCGTGGGGCCCAACTTCAAGTACGCCTCCAACTTCC
TGTGGCCCTTCAAGCTAAACACCCCCACCGGCGGCTGGCGCAAGAAGGCC
AACCATTATGTCAACGGTGGTGACTTCGGCAACCGCGAGGACCAGATCAA
CCGTCTGCTGCGCAAGATGGTCGCAAGCTTTCTAGACCAT
BO13633.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:11:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 759 | CG4897-PB | 1..756 | 17..772 | 3780 | 100 | Plus |
RpL7-RA | 759 | CG4897-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:12:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-RB | 1167 | CG4897-RB | 146..901 | 17..772 | 3780 | 100 | Plus |
RpL7-RA | 895 | CG4897-RA | 50..805 | 17..772 | 3780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10201598..10202055 | 315..772 | 2290 | 100 | Plus |
2L | 23513712 | 2L | 10201230..10201528 | 17..315 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:11:57 has no hits.
BO13633.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:36:53 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 1..759 | 17..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:02:50 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 41..808 | 10..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:12 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 50..805 | 17..774 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:36:53 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 41..808 | 10..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:12:59 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpL7-RA | 50..805 | 17..774 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:12:59 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10201230..10201528 | 17..315 | 100 | -> | Plus |
2L | 10201599..10202055 | 316..774 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:12 Download gff for
BO13633.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10201230..10201528 | 17..315 | 100 | -> | Plus |
arm_2L | 10201599..10202055 | 316..774 | 99 | | Plus |
BO13633.pep Sequence
Translation from 16 to 790
> BO13633.pep
MPAPVVKKPAAKKLPAVPESKLKFSKKQISKRVAESKRRLKKAAVIALRK
KENLVRAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRG
INKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNL
KSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFT
VGPNFKYASNFLWPFKLNTPTGGWRKKANHYVNGGDFGNREDQINRLLRK
MVASFLDH
BO13633.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpL7-PB | 252 | CG4897-PB | 1..252 | 1..252 | 1294 | 100 | Plus |
RpL7-PA | 252 | CG4897-PA | 1..252 | 1..252 | 1294 | 100 | Plus |
RpL7-like-PC | 257 | CG5317-PC | 4..255 | 7..250 | 344 | 33.3 | Plus |
RpL7-like-PB | 257 | CG5317-PB | 4..255 | 7..250 | 344 | 33.3 | Plus |
RpL7-like-PA | 257 | CG5317-PA | 4..255 | 7..250 | 344 | 33.3 | Plus |