Clone Sequence Records
BO13634.3prime Sequence
761 bp (741 high quality bases) assembled on 2006-05-08
> BO13634.3prime
ATGGTCTAGAAAGCTTGCGGCATCCTTGACCAGCAGATTGTAATTGGGTC
GACCCAGGCTCCGTGTACGCAGGAACTCCGCCTGAACCTCGGCCTCCATG
TAGAAGGCCATCACAGCCGGATCTCGTTTCATGCGTTCCAGCCAAAGGGT
CAGCTGGGGGAAGCGACTCTGATCGTAGTTATAATCCTCTCCACGCTGCA
ACTTAAGGAGCTCGAGGCGCTCACACCAGGGCCAAATCATATAGTCCAGA
ATGCCCGTCTGCTCGCCACCAAAGAATTCCGTACCACGTCGAGCCAGCTC
CCTTTCGTAGATGTCCAGGCCGCTCCAGAAGGGCTCCAGATCACCGCCAT
CGGATGCCTTGAAGAAGGCACCTAACACCGCTCTAAATCGCTCGATTAGT
AACTTGTCCTGCACTTTCTTCAGCGGATCACGTGGATAGAGTGGTCGCAA
TGGATACTGCTCGTCCAGATATTCACAAATCAGTAGCGACTCTGTGAGCA
CAGGTGGTCCAGGTTCTCGCACGATTTCTAGAGCCGGCACCTTGCCCTGT
GGATTCTTCTCCAGCAGCCACTCCGGCTTGTCTGTGAGATTAATGTAGAT
GCTGTGATACGGGATCTGCTTGGCGTCCAGGACCAGATGCACCCGTTGGG
CAAATGGGCAGAAGCGCATCGAGTACAGGCGAAGGATACCATCTTCGGGA
ACATCCGGCATGGGTGAGCCTTTTGCCAAATGCCTGCCGTTACTCATGTC
GACTGATAACT
BO13634.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6781-PA | 732 | CG6781-RA | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 38..767 | 748..19 | 3650 | 100 | Minus |
GstO3-RA | 881 | CG6776-RA | 85..257 | 732..560 | 280 | 78.2 | Minus |
GstO1-RA | 954 | CG6662-RA | 134..244 | 678..568 | 195 | 80.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520672..8521242 | 721..151 | 2855 | 100 | Minus |
3L | 28110227 | 3L | 8521299..8521431 | 151..19 | 665 | 100 | Minus |
3L | 28110227 | 3L | 8519538..8519671 | 693..560 | 250 | 79.1 | Minus |
3L | 28110227 | 3L | 8524566..8524676 | 568..678 | 195 | 78.4 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:24:32 has no hits.
BO13634.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:47 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 1..732 | 16..747 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:39 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 1..732 | 16..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:46 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 13..755 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:34 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 13..755 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:34 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8520674..8521242 | 151..719 | 100 | -> | Minus |
3L | 8521300..8521437 | 13..150 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:46 Download gff for
BO13634.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513774..8514342 | 151..719 | 100 | -> | Minus |
arm_3L | 8514400..8514537 | 13..150 | 97 | | Minus |
BO13634.5prime Sequence
764 bp (700 high quality bases) assembled on 2006-05-08
> BO13634.5prime
GAAGTTATCACTCTACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCGCAAG
CTTTCTAGACCATT
BO13634.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6781-PA | 732 | CG6781-RA | 1..729 | 17..745 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 38..767 | 16..745 | 3650 | 100 | Plus |
GstO3-RA | 881 | CG6776-RA | 85..257 | 32..204 | 280 | 78.2 | Plus |
GstO1-RA | 954 | CG6662-RA | 134..244 | 86..196 | 195 | 80.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520672..8521242 | 43..613 | 2855 | 100 | Plus |
3L | 28110227 | 3L | 8521299..8521431 | 613..745 | 665 | 100 | Plus |
3L | 28110227 | 3L | 8519538..8519671 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8524566..8524676 | 196..86 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:22:30 has no hits.
BO13634.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:48 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:40 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6781-PA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:07 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:09 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:09 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8521300..8521437 | 614..751 | 97 | | Plus |
3L | 8520674..8521242 | 45..613 | 100 | -> | Plus |
3L | 8520584..8520617 | 9..44 | 91 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:07 Download gff for
BO13634.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513684..8513717 | 9..44 | 91 | -> | Plus |
arm_3L | 8513774..8514342 | 45..613 | 100 | -> | Plus |
arm_3L | 8514400..8514537 | 614..751 | 97 | | Plus |
BO13634.complete Sequence
763 bp assembled on 2006-10-11
GenBank Submission: FJ638717
> BO13634.complete
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCGCAAG
CTTTCTAGACCAT
BO13634.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 732 | CG6781-PA | 1..729 | 17..745 | 3645 | 100 | Plus |
GstO3-RA | 726 | CG6776-PA | 16..188 | 32..204 | 280 | 77.5 | Plus |
GstO1-RA | 765 | CG6662-PA | 70..180 | 86..196 | 195 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-RA | 825 | CG6781-RA | 38..767 | 16..745 | 3650 | 100 | Plus |
GstO3-RA | 881 | CG6776-RA | 85..257 | 32..204 | 280 | 77.5 | Plus |
GstO1-RA | 954 | CG6662-RA | 134..244 | 86..196 | 195 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8520672..8521242 | 43..613 | 2855 | 100 | Plus |
3L | 28110227 | 3L | 8521299..8521431 | 613..745 | 665 | 100 | Plus |
3L | 28110227 | 3L | 8519538..8519671 | 71..204 | 250 | 79.1 | Plus |
3L | 28110227 | 3L | 8524566..8524676 | 196..86 | 195 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:11:55 has no hits.
BO13634.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:46 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 1..732 | 17..748 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:45 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:25 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 39..767 | 17..747 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:46 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 33..773 | 9..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:10 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
se-RA | 39..767 | 17..747 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:10 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8520590..8520617 | 17..44 | 100 | -> | Plus |
3L | 8520674..8521242 | 45..613 | 100 | -> | Plus |
3L | 8521300..8521431 | 614..747 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:25 Download gff for
BO13634.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8513690..8513717 | 17..44 | 100 | -> | Plus |
arm_3L | 8513774..8514342 | 45..613 | 100 | -> | Plus |
arm_3L | 8514400..8514531 | 614..747 | 98 | | Plus |
BO13634.pep Sequence
Translation from 16 to 763
> BO13634.pep
MSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSI
YINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLICEYLDEQYPL
RPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPFWSGLDIYERE
LARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYNYDQSRFPQLT
LWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLVKDAASFLDH
BO13634.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
se-PA | 243 | CG6781-PA | 1..243 | 1..243 | 1300 | 100 | Plus |
GstO3-PA | 241 | CG6776-PA | 1..240 | 1..239 | 775 | 57.1 | Plus |
GstO1-PA | 254 | CG6662-PA | 1..248 | 1..243 | 692 | 52.8 | Plus |
GstO2-PB | 250 | CG6673-PB | 6..245 | 5..238 | 620 | 46.7 | Plus |
GstO2-PA | 251 | CG6673-PA | 6..248 | 5..241 | 575 | 43.6 | Plus |