Clone BO13634 Report

Search the DGRC for BO13634

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptse-RA
Protein status:BO13634.pep: validated full length
Sequenced Size:763

Clone Sequence Records

BO13634.3prime Sequence

761 bp (741 high quality bases) assembled on 2006-05-08

> BO13634.3prime
ATGGTCTAGAAAGCTTGCGGCATCCTTGACCAGCAGATTGTAATTGGGTC
GACCCAGGCTCCGTGTACGCAGGAACTCCGCCTGAACCTCGGCCTCCATG
TAGAAGGCCATCACAGCCGGATCTCGTTTCATGCGTTCCAGCCAAAGGGT
CAGCTGGGGGAAGCGACTCTGATCGTAGTTATAATCCTCTCCACGCTGCA
ACTTAAGGAGCTCGAGGCGCTCACACCAGGGCCAAATCATATAGTCCAGA
ATGCCCGTCTGCTCGCCACCAAAGAATTCCGTACCACGTCGAGCCAGCTC
CCTTTCGTAGATGTCCAGGCCGCTCCAGAAGGGCTCCAGATCACCGCCAT
CGGATGCCTTGAAGAAGGCACCTAACACCGCTCTAAATCGCTCGATTAGT
AACTTGTCCTGCACTTTCTTCAGCGGATCACGTGGATAGAGTGGTCGCAA
TGGATACTGCTCGTCCAGATATTCACAAATCAGTAGCGACTCTGTGAGCA
CAGGTGGTCCAGGTTCTCGCACGATTTCTAGAGCCGGCACCTTGCCCTGT
GGATTCTTCTCCAGCAGCCACTCCGGCTTGTCTGTGAGATTAATGTAGAT
GCTGTGATACGGGATCTGCTTGGCGTCCAGGACCAGATGCACCCGTTGGG
CAAATGGGCAGAAGCGCATCGAGTACAGGCGAAGGATACCATCTTCGGGA
ACATCCGGCATGGGTGAGCCTTTTGCCAAATGCCTGCCGTTACTCATGTC
GACTGATAACT

BO13634.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6781-PA 732 CG6781-RA 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 38..767 748..19 3650 100 Minus
GstO3-RA 881 CG6776-RA 85..257 732..560 280 78.2 Minus
GstO1-RA 954 CG6662-RA 134..244 678..568 195 80.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520672..8521242 721..151 2855 100 Minus
3L 28110227 3L 8521299..8521431 151..19 665 100 Minus
3L 28110227 3L 8519538..8519671 693..560 250 79.1 Minus
3L 28110227 3L 8524566..8524676 568..678 195 78.4 Plus
Blast to na_te.dros performed on 2015-02-02 19:24:32 has no hits.

BO13634.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:47 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 1..732 16..747 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:39 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 1..732 16..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:21:46 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 13..755 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:08:34 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 13..755 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:08:34 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8520674..8521242 151..719 100 -> Minus
3L 8521300..8521437 13..150 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:21:46 Download gff for BO13634.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513774..8514342 151..719 100 -> Minus
arm_3L 8514400..8514537 13..150 97   Minus

BO13634.5prime Sequence

764 bp (700 high quality bases) assembled on 2006-05-08

> BO13634.5prime
GAAGTTATCACTCTACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCGCAAG
CTTTCTAGACCATT

BO13634.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG6781-PA 732 CG6781-RA 1..729 17..745 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:22:33
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 38..767 16..745 3650 100 Plus
GstO3-RA 881 CG6776-RA 85..257 32..204 280 78.2 Plus
GstO1-RA 954 CG6662-RA 134..244 86..196 195 80.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520672..8521242 43..613 2855 100 Plus
3L 28110227 3L 8521299..8521431 613..745 665 100 Plus
3L 28110227 3L 8519538..8519671 71..204 250 79.1 Plus
3L 28110227 3L 8524566..8524676 196..86 195 78.4 Minus
Blast to na_te.dros performed on 2015-02-10 22:22:30 has no hits.

BO13634.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:48 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:40 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6781-PA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:57:07 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:56:09 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:56:09 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8521300..8521437 614..751 97   Plus
3L 8520674..8521242 45..613 100 -> Plus
3L 8520584..8520617 9..44 91 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:57:07 Download gff for BO13634.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513684..8513717 9..44 91 -> Plus
arm_3L 8513774..8514342 45..613 100 -> Plus
arm_3L 8514400..8514537 614..751 97   Plus

BO13634.complete Sequence

763 bp assembled on 2006-10-11

GenBank Submission: FJ638717

> BO13634.complete
GAAGTTATCAGTCGACATGAGTAACGGCAGGCATTTGGCAAAAGGCTCAC
CCATGCCGGATGTTCCCGAAGATGGTATCCTTCGCCTGTACTCGATGCGC
TTCTGCCCATTTGCCCAACGGGTGCATCTGGTCCTGGACGCCAAGCAGAT
CCCGTATCACAGCATCTACATTAATCTCACAGACAAGCCGGAGTGGCTGC
TGGAGAAGAATCCACAGGGCAAGGTGCCGGCTCTAGAAATCGTGCGAGAA
CCTGGACCACCTGTGCTCACAGAGTCGCTACTGATTTGTGAATATCTGGA
CGAGCAGTATCCATTGCGACCACTCTATCCACGTGATCCGCTGAAGAAAG
TGCAGGACAAGTTACTAATCGAGCGATTTAGAGCGGTGTTAGGTGCCTTC
TTCAAGGCATCCGATGGCGGTGATCTGGAGCCCTTCTGGAGCGGCCTGGA
CATCTACGAAAGGGAGCTGGCTCGACGTGGTACGGAATTCTTTGGTGGCG
AGCAGACGGGCATTCTGGACTATATGATTTGGCCCTGGTGTGAGCGCCTC
GAGCTCCTTAAGTTGCAGCGTGGAGAGGATTATAACTACGATCAGAGTCG
CTTCCCCCAGCTGACCCTTTGGCTGGAACGCATGAAACGAGATCCGGCTG
TGATGGCCTTCTACATGGAGGCCGAGGTTCAGGCGGAGTTCCTGCGTACA
CGGAGCCTGGGTCGACCCAATTACAATCTGCTGGTCAAGGATGCCGCAAG
CTTTCTAGACCAT

BO13634.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:11:56
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 732 CG6781-PA 1..729 17..745 3645 100 Plus
GstO3-RA 726 CG6776-PA 16..188 32..204 280 77.5 Plus
GstO1-RA 765 CG6662-PA 70..180 86..196 195 78.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:11:57
Subject Length Description Subject Range Query Range Score Percent Strand
se-RA 825 CG6781-RA 38..767 16..745 3650 100 Plus
GstO3-RA 881 CG6776-RA 85..257 32..204 280 77.5 Plus
GstO1-RA 954 CG6662-RA 134..244 86..196 195 78.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:11:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8520672..8521242 43..613 2855 100 Plus
3L 28110227 3L 8521299..8521431 613..745 665 100 Plus
3L 28110227 3L 8519538..8519671 71..204 250 79.1 Plus
3L 28110227 3L 8524566..8524676 196..86 195 78.4 Minus
Blast to na_te.dros performed on 2014-11-27 15:11:55 has no hits.

BO13634.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:46 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 1..732 17..748 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:45 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:38:25 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 39..767 17..747 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:46 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 33..773 9..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:02:10 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
se-RA 39..767 17..747 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:02:10 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8520590..8520617 17..44 100 -> Plus
3L 8520674..8521242 45..613 100 -> Plus
3L 8521300..8521431 614..747 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:38:25 Download gff for BO13634.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8513690..8513717 17..44 100 -> Plus
arm_3L 8513774..8514342 45..613 100 -> Plus
arm_3L 8514400..8514531 614..747 98   Plus

BO13634.pep Sequence

Translation from 16 to 763

> BO13634.pep
MSNGRHLAKGSPMPDVPEDGILRLYSMRFCPFAQRVHLVLDAKQIPYHSI
YINLTDKPEWLLEKNPQGKVPALEIVREPGPPVLTESLLICEYLDEQYPL
RPLYPRDPLKKVQDKLLIERFRAVLGAFFKASDGGDLEPFWSGLDIYERE
LARRGTEFFGGEQTGILDYMIWPWCERLELLKLQRGEDYNYDQSRFPQLT
LWLERMKRDPAVMAFYMEAEVQAEFLRTRSLGRPNYNLLVKDAASFLDH

BO13634.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
se-PA 243 CG6781-PA 1..243 1..243 1300 100 Plus
GstO3-PA 241 CG6776-PA 1..240 1..239 775 57.1 Plus
GstO1-PA 254 CG6662-PA 1..248 1..243 692 52.8 Plus
GstO2-PB 250 CG6673-PB 6..245 5..238 620 46.7 Plus
GstO2-PA 251 CG6673-PA 6..248 5..241 575 43.6 Plus