Clone BO13635 Report

Search the DGRC for BO13635

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG6188-RA
Protein status:BO13635.pep: validated full length
Sequenced Size:901

Clone Sequence Records

BO13635.3prime Sequence

716 bp (715 high quality bases) assembled on 2006-05-08

> BO13635.3prime
ATGGTCTAGAAAGCTTGCAACCTGTGGCTTTTCGATCAGGTGAATGTAGA
AGGCGGGGTTCTTCACCTGGCTCATCTCCTTGAAGTCACCATACAACTGG
TGCTTGGCTTTGGCGGAGAAGATCTCGGCTAGAATCTCCTGGAATCGTTT
CAGCCCGTGGGGATAGTAGGACAGACGGAACTCACTGGTCAACTTGTTGC
CAGCGATCAGGTAGTCCATCGACACCAGGGCGGGCTTACCGCAGTAGAAG
AGCACGGATGTCTTGATGTCCGCCGTGTGACTCGTATTATAGTAGATGCT
CTTGGCAGGCGTAGCTCCCGTTTCCAGGATATTGTCGTAGTTGCGATGAT
CGATAAGCAGGACGCCTCCAGGCTTGAGGCACTTTTCGAAGTTGCCAATA
GCCTGCTTGTGCTCCCGCTGATCCCCGAACCCGTCCATCAAGTGGGCAAA
GGAGTTGCCCAAGCAAATGACGGCATCGAAACCATCCTGAATGTGCTCCT
GAATGTCGTCGTACAGTGTCAACCAGTTGGCTTCCTCAATGACCCACTTA
TCGAAGGCAGCTTCATTTCGCCGGGCCCAGCGCTCCTTGAGGGCGTACTT
CAACATCTTATCAGAGGCATCTACGGACACAACTTCGAAGCCCTCCTCCA
CAAGCATCAGGGAGTCCACACCCGTTCCACAGGCCACGTCTAGGACACGC
TTGCATCCCTTATTGC

BO13635.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6188-PA 870 CG6188-RA 170..867 716..19 3490 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:36
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 211..908 716..19 3490 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675736..12676002 285..19 1335 100 Minus
3R 32079331 3R 12675186..12675443 543..286 1290 100 Minus
3R 32079331 3R 12674998..12675126 671..543 645 100 Minus
3R 32079331 3R 12674818..12674863 716..671 230 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:26:34 has no hits.

BO13635.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:49 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 170..870 18..716 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:41 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 170..870 18..716 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:17 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 211..915 10..716 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:25 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 211..915 10..716 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:25 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12675187..12675443 286..542 100 -> Minus
3R 12675736..12676009 10..285 98   Minus
3R 12674818..12674863 671..716 100 -> Minus
3R 12674999..12675126 543..670 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:17 Download gff for BO13635.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500909..8501165 286..542 100 -> Minus
arm_3R 8500540..8500585 671..716 100 -> Minus
arm_3R 8500721..8500848 543..670 100 -> Minus
arm_3R 8501458..8501731 10..285 98   Minus

BO13635.5prime Sequence

851 bp (758 high quality bases) assembled on 2006-05-08

> BO13635.5prime
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAAATGAGCCAGGTGAAAAACCCCGCC
T

BO13635.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6188-PA 870 CG6188-RA 1..835 17..851 4125 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 42..876 17..851 4145 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675186..12675443 359..616 1290 100 Plus
3R 32079331 3R 12675736..12675970 617..851 1145 99.1 Plus
3R 32079331 3R 12674649..12674863 17..231 1075 100 Plus
3R 32079331 3R 12674998..12675126 231..359 645 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:23:15 has no hits.

BO13635.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:50 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:43 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-PA 1..835 17..851 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:38:25 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 34..876 9..851 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:01 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 34..876 9..851 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:01 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12674641..12674863 9..231 98 -> Plus
3R 12674999..12675126 232..359 100 -> Plus
3R 12675187..12675443 360..616 100 -> Plus
3R 12675736..12675970 617..851 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:38:25 Download gff for BO13635.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500363..8500585 9..231 98 -> Plus
arm_3R 8500721..8500848 232..359 100 -> Plus
arm_3R 8500909..8501165 360..616 100 -> Plus
arm_3R 8501458..8501692 617..851 99   Plus

BO13635.complete Sequence

901 bp assembled on 2006-10-11

GenBank Submission: FJ632874

> BO13635.complete
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAGATGAGCCAGGTGAAGAACCCCGCC
TTCTACATTCACCTGATCGAAAAGCCACAGGTTGCAAGCTTTCTAGACCA
T

BO13635.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 870 CG6188-PA 1..867 17..883 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-RA 990 CG6188-RA 42..908 17..883 4335 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12675736..12676002 617..883 1335 100 Plus
3R 32079331 3R 12675186..12675443 359..616 1290 100 Plus
3R 32079331 3R 12674649..12674863 17..231 1075 100 Plus
3R 32079331 3R 12674998..12675126 231..359 645 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:34:18 has no hits.

BO13635.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:47 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 1..870 17..884 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:47 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 33..914 9..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:28 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 42..908 17..885 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:47 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
CG6188-RA 33..914 9..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:55 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
Gnmt-RA 42..908 17..885 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:55 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12674649..12674863 17..231 100 -> Plus
3R 12674999..12675126 232..359 100 -> Plus
3R 12675187..12675443 360..616 100 -> Plus
3R 12675736..12676002 617..885 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:28 Download gff for BO13635.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8500721..8500848 232..359 100 -> Plus
arm_3R 8500909..8501165 360..616 100 -> Plus
arm_3R 8501458..8501724 617..885 99   Plus
arm_3R 8500371..8500585 17..231 100 -> Plus

BO13635.pep Sequence

Translation from 16 to 901

> BO13635.pep
MTTSADSVFVARSDGISAEGVRDQYADGKAAKVWEIFIGDKNSRTDNYKN
FLIDMLRNKGCKRVLDVACGTGVDSLMLVEEGFEVVSVDASDKMLKYALK
ERWARRNEAAFDKWVIEEANWLTLYDDIQEHIQDGFDAVICLGNSFAHLM
DGFGDQREHKQAIGNFEKCLKPGGVLLIDHRNYDNILETGATPAKSIYYN
TSHTADIKTSVLFYCGKPALVSMDYLIAGNKLTSEFRLSYYPHGLKRFQE
ILAEIFSAKAKHQLYGDFKEMSQVKNPAFYIHLIEKPQVASFLDH

BO13635.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Gnmt-PA 289 CG6188-PA 1..289 1..289 1520 100 Plus