Clone Sequence Records
BO13635.3prime Sequence
716 bp (715 high quality bases) assembled on 2006-05-08
> BO13635.3prime
ATGGTCTAGAAAGCTTGCAACCTGTGGCTTTTCGATCAGGTGAATGTAGA
AGGCGGGGTTCTTCACCTGGCTCATCTCCTTGAAGTCACCATACAACTGG
TGCTTGGCTTTGGCGGAGAAGATCTCGGCTAGAATCTCCTGGAATCGTTT
CAGCCCGTGGGGATAGTAGGACAGACGGAACTCACTGGTCAACTTGTTGC
CAGCGATCAGGTAGTCCATCGACACCAGGGCGGGCTTACCGCAGTAGAAG
AGCACGGATGTCTTGATGTCCGCCGTGTGACTCGTATTATAGTAGATGCT
CTTGGCAGGCGTAGCTCCCGTTTCCAGGATATTGTCGTAGTTGCGATGAT
CGATAAGCAGGACGCCTCCAGGCTTGAGGCACTTTTCGAAGTTGCCAATA
GCCTGCTTGTGCTCCCGCTGATCCCCGAACCCGTCCATCAAGTGGGCAAA
GGAGTTGCCCAAGCAAATGACGGCATCGAAACCATCCTGAATGTGCTCCT
GAATGTCGTCGTACAGTGTCAACCAGTTGGCTTCCTCAATGACCCACTTA
TCGAAGGCAGCTTCATTTCGCCGGGCCCAGCGCTCCTTGAGGGCGTACTT
CAACATCTTATCAGAGGCATCTACGGACACAACTTCGAAGCCCTCCTCCA
CAAGCATCAGGGAGTCCACACCCGTTCCACAGGCCACGTCTAGGACACGC
TTGCATCCCTTATTGC
BO13635.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6188-PA | 870 | CG6188-RA | 170..867 | 716..19 | 3490 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:26:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 211..908 | 716..19 | 3490 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675736..12676002 | 285..19 | 1335 | 100 | Minus |
3R | 32079331 | 3R | 12675186..12675443 | 543..286 | 1290 | 100 | Minus |
3R | 32079331 | 3R | 12674998..12675126 | 671..543 | 645 | 100 | Minus |
3R | 32079331 | 3R | 12674818..12674863 | 716..671 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:26:34 has no hits.
BO13635.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:49 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 170..870 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:41 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 170..870 | 18..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:17 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 211..915 | 10..716 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:27:25 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 211..915 | 10..716 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:27:25 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12675187..12675443 | 286..542 | 100 | -> | Minus |
3R | 12675736..12676009 | 10..285 | 98 | | Minus |
3R | 12674818..12674863 | 671..716 | 100 | -> | Minus |
3R | 12674999..12675126 | 543..670 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:17 Download gff for
BO13635.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500909..8501165 | 286..542 | 100 | -> | Minus |
arm_3R | 8500540..8500585 | 671..716 | 100 | -> | Minus |
arm_3R | 8500721..8500848 | 543..670 | 100 | -> | Minus |
arm_3R | 8501458..8501731 | 10..285 | 98 | | Minus |
BO13635.5prime Sequence
851 bp (758 high quality bases) assembled on 2006-05-08
> BO13635.5prime
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAAATGAGCCAGGTGAAAAACCCCGCC
T
BO13635.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6188-PA | 870 | CG6188-RA | 1..835 | 17..851 | 4125 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 42..876 | 17..851 | 4145 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:23:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675186..12675443 | 359..616 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 12675736..12675970 | 617..851 | 1145 | 99.1 | Plus |
3R | 32079331 | 3R | 12674649..12674863 | 17..231 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 12674998..12675126 | 231..359 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:23:15 has no hits.
BO13635.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:50 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:43 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-PA | 1..835 | 17..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:38:25 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 34..876 | 9..851 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:34:01 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 34..876 | 9..851 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:34:01 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12674641..12674863 | 9..231 | 98 | -> | Plus |
3R | 12674999..12675126 | 232..359 | 100 | -> | Plus |
3R | 12675187..12675443 | 360..616 | 100 | -> | Plus |
3R | 12675736..12675970 | 617..851 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:38:25 Download gff for
BO13635.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500363..8500585 | 9..231 | 98 | -> | Plus |
arm_3R | 8500721..8500848 | 232..359 | 100 | -> | Plus |
arm_3R | 8500909..8501165 | 360..616 | 100 | -> | Plus |
arm_3R | 8501458..8501692 | 617..851 | 99 | | Plus |
BO13635.complete Sequence
901 bp assembled on 2006-10-11
GenBank Submission: FJ632874
> BO13635.complete
GAAGTTATCAGTCGACATGACAACCTCCGCTGACAGTGTGTTCGTTGCCC
GATCCGATGGCATCTCCGCCGAAGGAGTCCGGGATCAGTACGCCGATGGC
AAGGCCGCCAAGGTGTGGGAAATCTTCATCGGTGACAAAAACTCGCGTAC
GGACAACTACAAGAACTTCCTGATCGATATGCTGCGCAATAAGGGATGCA
AGCGTGTCCTAGACGTGGCCTGTGGAACGGGTGTGGACTCCCTGATGCTT
GTGGAGGAGGGCTTCGAAGTTGTGTCCGTAGATGCCTCTGATAAGATGTT
GAAGTACGCCCTCAAGGAGCGCTGGGCCCGGCGAAATGAAGCTGCCTTCG
ATAAGTGGGTCATTGAGGAAGCCAACTGGTTGACACTGTACGACGACATT
CAGGAGCACATTCAGGATGGTTTCGATGCCGTCATTTGCTTGGGCAACTC
CTTTGCCCACTTGATGGACGGGTTCGGGGATCAGCGGGAGCACAAGCAGG
CTATTGGCAACTTCGAAAAGTGCCTCAAGCCTGGAGGCGTCCTGCTTATC
GATCATCGCAACTACGACAATATCCTGGAAACGGGAGCTACGCCTGCCAA
GAGCATCTACTATAATACGAGTCACACGGCGGACATCAAGACATCCGTGC
TCTTCTACTGCGGTAAGCCCGCCCTGGTGTCGATGGACTACCTGATCGCT
GGCAACAAGTTGACCAGTGAGTTCCGTCTGTCCTACTATCCCCACGGGCT
GAAACGATTCCAGGAGATTCTAGCCGAGATCTTCTCCGCCAAAGCCAAGC
ACCAGTTGTATGGTGACTTCAAGGAGATGAGCCAGGTGAAGAACCCCGCC
TTCTACATTCACCTGATCGAAAAGCCACAGGTTGCAAGCTTTCTAGACCA
T
BO13635.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 870 | CG6188-PA | 1..867 | 17..883 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-RA | 990 | CG6188-RA | 42..908 | 17..883 | 4335 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12675736..12676002 | 617..883 | 1335 | 100 | Plus |
3R | 32079331 | 3R | 12675186..12675443 | 359..616 | 1290 | 100 | Plus |
3R | 32079331 | 3R | 12674649..12674863 | 17..231 | 1075 | 100 | Plus |
3R | 32079331 | 3R | 12674998..12675126 | 231..359 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:34:18 has no hits.
BO13635.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:47 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 1..870 | 17..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:47 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 33..914 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:28 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 42..908 | 17..885 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:47 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6188-RA | 33..914 | 9..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:55 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gnmt-RA | 42..908 | 17..885 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:55 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12674649..12674863 | 17..231 | 100 | -> | Plus |
3R | 12674999..12675126 | 232..359 | 100 | -> | Plus |
3R | 12675187..12675443 | 360..616 | 100 | -> | Plus |
3R | 12675736..12676002 | 617..885 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:28 Download gff for
BO13635.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8500721..8500848 | 232..359 | 100 | -> | Plus |
arm_3R | 8500909..8501165 | 360..616 | 100 | -> | Plus |
arm_3R | 8501458..8501724 | 617..885 | 99 | | Plus |
arm_3R | 8500371..8500585 | 17..231 | 100 | -> | Plus |
BO13635.pep Sequence
Translation from 16 to 901
> BO13635.pep
MTTSADSVFVARSDGISAEGVRDQYADGKAAKVWEIFIGDKNSRTDNYKN
FLIDMLRNKGCKRVLDVACGTGVDSLMLVEEGFEVVSVDASDKMLKYALK
ERWARRNEAAFDKWVIEEANWLTLYDDIQEHIQDGFDAVICLGNSFAHLM
DGFGDQREHKQAIGNFEKCLKPGGVLLIDHRNYDNILETGATPAKSIYYN
TSHTADIKTSVLFYCGKPALVSMDYLIAGNKLTSEFRLSYYPHGLKRFQE
ILAEIFSAKAKHQLYGDFKEMSQVKNPAFYIHLIEKPQVASFLDH
BO13635.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gnmt-PA | 289 | CG6188-PA | 1..289 | 1..289 | 1520 | 100 | Plus |