Clone BO13636 Report

Search the DGRC for BO13636

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:36
Vector:pDNR-Dual
Associated Gene/TranscriptAnce-3-RB
Protein status:BO13636.pep: Imported from assembly
Sequenced Size:2566

Clone Sequence Records

BO13636.3prime Sequence

742 bp (738 high quality bases) assembled on 2006-05-08

> BO13636.3prime
ATGGTCTAGAAAGCTTGCTAATAAACGTAGGCTGAAGTAAAGGTAAATCA
GCAAGATCAGTGGGTATAGGAATGGCGCTGACTTTTGTCCCGTCGCACCA
TTGTAATATCCACCAAAGACCTGCAAGCCAGCAGTTTCGATGCTCCTCTT
GCAGTAGTCACCATCGTAGTTCCATCCCACATACTCGTTCGTCCGCAGAT
TCTCCTGGCGCAGCCATTCCTCCAGTGGAGCAAAGTACTCCCGCAGAGCG
GTTCCATCCAAGCGACCCTCCCTCAGGGTTTCCTCAAGGACCTCTTGCCA
TGGCTGGGAGGCTCCCTTGGACATCAGGGTTTTGAGAATATTTCCCGCTG
CTGGCTGGCGATAAATGTCGCATTGGTGGAGCGGCTTCCTAGGATCACCG
GGCACATACTGGCCGGACTCGCGGCACAGGCCTCGATAGATCTGGAACTG
CAGAACCGTGGAGAAAAAGTATTTGATATAGGGAATATTTGCTGGTATAT
GGTATTTGGCTCCCGGGTCGAAATCCTTTTCTGATCGCAAAACTGGGGGC
TTTATACCGGAATACTTTTCTCGTAAATTCCAGTAGTGACAGTTCATTGT
TCGCTTATTCGCATTGCCACTAAAGACATCATACCGCCAATTGTCCAGAG
ATAATGCAAAAGGTAAAAATGCCACCTTGTCAATGGCCATGGTGAACAGA
TAGTTAATATCATAGCTGGACTCATCGAGGGATCTTTTGTAG

BO13636.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17988-PB 2535 Ance-3-RB 1814..2532 737..19 3595 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 2097..2815 737..19 3595 100 Minus
Ance-3-RB 2981 CG17988-RB 2097..2815 737..19 3595 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13955265..13955577 331..19 1565 100 Minus
2L 23513712 2L 13954713..13954857 476..332 710 99.3 Minus
2L 23513712 2L 13917975..13918080 677..572 530 100 Minus
2L 23513712 2L 13918146..13918245 572..473 500 100 Minus
2L 23513712 2L 13917589..13917652 737..674 320 100 Minus
Blast to na_te.dros performed 2015-02-08 12:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Tel 2485 Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). 1219..1255 701..665 113 78.4 Minus

BO13636.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:51 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1810..2535 16..742 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:44 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1810..2535 16..742 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:30 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 2093..2822 11..742 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:18 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 2093..2822 11..742 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:18 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 13917585..13917650 676..742 98 -> Minus
2L 13917977..13918080 572..675 100 -> Minus
2L 13918147..13918245 473..571 100 -> Minus
2L 13954717..13954857 332..472 100 -> Minus
2L 13955265..13955584 11..331 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:30 Download gff for BO13636.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13917585..13917650 676..742 98 -> Minus
arm_2L 13917977..13918080 572..675 100 -> Minus
arm_2L 13918147..13918245 473..571 100 -> Minus
arm_2L 13954717..13954857 332..472 100 -> Minus
arm_2L 13955265..13955584 11..331 98   Minus

BO13636.5prime Sequence

809 bp (775 high quality bases) assembled on 2006-05-08

> BO13636.5prime
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTT
GGAACGTCAGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGA
AGCTGCGCATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGC
ACCGCCAATGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTT
TACCCAAACGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGC
GCATCACTG

BO13636.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG17988-PB 2535 Ance-3-RB 1..793 17..809 3965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 284..1076 17..809 3965 100 Plus
Ance-3-RB 2981 CG17988-RB 284..1076 17..809 3965 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13915398..13915905 259..766 2540 100 Plus
2L 23513712 2L 13915008..13915250 17..259 1215 100 Plus
2L 23513712 2L 13916405..13916448 766..809 220 100 Plus
Blast to na_te.dros performed on 2015-02-11 14:21:23 has no hits.

BO13636.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:53 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1..793 17..809 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:45 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17988-PB 1..793 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:18 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..1076 17..809 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:30 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..1076 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:30 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 13915008..13915250 17..259 100 -> Plus
2L 13915399..13915905 260..766 100 -> Plus
2L 13916406..13916448 767..809 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:18 Download gff for BO13636.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13915008..13915250 17..259 100 -> Plus
arm_2L 13915399..13915905 260..766 100 -> Plus
arm_2L 13916406..13916448 767..809 100   Plus

BO13636.complete Sequence

2566 bp assembled on 2008-08-14

GenBank Submission: FJ632875

> BO13636.complete
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTT
GGAACGTCAGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGA
AGCTGCGCATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGC
ACCGCCAATGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTT
TACCCAAACGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGC
GCATCACTGCCGAGCAATCCAAGCGGATCAATAAGGATCTCATCTTCGAC
CGTCGCCTCTACAGACAACTGATGCTGCAGTCGGAAGTGGGACCCAATGC
TCTGCCCCTAGATGTATTGGATAGGTATAATCGCCTGCTCAATGAGATGC
TGTTCCTGTACAACAGCGCCGAAATCTGTGCCTACCAGCAGCCCTTTCAG
TGCGATCTTCACTACATACCCCAGCTGAAGGACATCATGGCCAAGAGCAG
GGACTGGGATGAGCTGCAGCACACTTGGGTGGAATACCACAGGAAGGCGG
GACGCGGAATGCGGGATAGTTATGAGCAGTTGATCGATGTGATGCAGGAG
GTGGCCTACGTAAACAATGTCACTAATGGCGGGGAGTATTGGTATTTGGC
CTACGAGTCGGGTAACTTTCGCCAGGATATGGACATTGTTTGGGAACAGA
TAAGGCCTCTTTACGAAGGATTGCATGCCTATGTACGTCGCAAGCTGAGG
GATTACTATGGTCCAGATCGGATAAACCGCATAGCACCCATTCCCTCGCA
CATTCTGGGCAACATGTACGGCCAGTCGTGGTCCAATGTGTTGGACATTT
TGATACCCTATCCAGGCCGGAAGCTGATCGACGTCACGCCGCGAATGGTG
GAACAGGGCTACACACCGCAACTGATGTTCCAGTTGGCCGAGGAGTTCTT
CACCTCCATTAATATGTCTGCGGTGGGTCCGGAGTTCTATCGCAACTCCA
TCTTCGAACAGCCCCTGGATCGGAGGGTCCTGTGTGAGCCATCCGCCTGG
GACTTTTGCAATCGTCACGATTTCCGCGTTAAAATCTGTACGGATATCAA
TCAGCGAAGTTTGATTAGTGTGCACCATGAGATGGCGCACATTCAGTACT
TTCTGCAGTATCGTCACCTGCCCAAGATCTTCAGAAATGGAGCGAATCCG
GCATTTCACCAGGCGGTGGGCGATGCCATTGGCCTGTCCGTATCAACTCC
AAGGCATTTGCAGACTCTGGGACTACTACAAAGATCCCTCGATGAGTCCA
GCTATGATATTAACTATCTGTTCACCATGGCCATTGACAAGGTGGCATTT
TTACCTTTTGCATTATCTCTGGACAATTGGCGGTATGATGTCTTTAGTGG
CAATGCGAATAAGCGAACAATGAACTGTCACTACTGGAATTTACGAGAAA
AGTATTCCGGTATAAAGCCCCCAGTTTTGCGATCAGAAAAGGATTTCGAC
CCGGGAGCCAAATACCATATACCAGCAAATATTCCCTATATCAAATACTT
TTTCTCCACGGTTCTGCAGTTCCAGATCTATCGAGGCCTGTGCCGCGAGT
CCGGCCAGTATGTGCCCGGTGATCCTAGGAAGCCGCTCCACCAATGCGAC
ATTTATCGCCAGCCAGCAGCGGGAAATATTCTCAAAACCCTGATGTCCAA
GGGAGCCTCCCAGCCATGGCAAGAGGTCCTTGAGGAAACCCTGAGGGAGG
GTCGCTTGGATGGAACCGCTCTGCGGGAGTACTTTGCTCCACTGGAGGAA
TGGCTGCGCCAGGAGAATCTGCGGACGAACGAGTATGTGGGATGGAACTA
CGATGGTGACTACTGCAAGAGGAGCATCGAAACTGCTGGCTTGCAGGTCT
TTGGTGGATATTACAATGGTGCGACGGGACAAAAGTCAGCGCCATTCCTA
TACCCACTGATCTTGCTGATTTACCTTTACTTCAGCCTACGTTTATTAGC
AAGCTTTCTAGACCAT

BO13636.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:16
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 2535 CG17988-PC 1..2532 17..2548 12660 100 Plus
Ance-3-RB 2535 CG17988-PB 1..2532 17..2548 12660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:17
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-RC 3426 CG17988-RC 284..2815 17..2548 12660 100 Plus
Ance-3-RB 2981 CG17988-RB 284..2815 17..2548 12660 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13916926..13917652 1167..1893 3635 100 Plus
2L 23513712 2L 13915398..13915905 259..766 2540 100 Plus
2L 23513712 2L 13955265..13955577 2236..2548 1565 100 Plus
2L 23513712 2L 13915008..13915250 17..259 1215 100 Plus
2L 23513712 2L 13916620..13916861 925..1166 1210 100 Plus
2L 23513712 2L 13916405..13916564 766..925 800 100 Plus
2L 23513712 2L 13954713..13954857 2091..2235 710 99.3 Plus
2L 23513712 2L 13917975..13918080 1890..1995 530 100 Plus
2L 23513712 2L 13918146..13918245 1995..2094 500 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:28:15 has no hits.

BO13636.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:33 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2822 17..2556 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:44 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2815 17..2550 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:17 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2815 17..2550 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:13 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
Ance-3-RB 284..2815 17..2550 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:13 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13915399..13915905 260..766 100 -> Plus
2L 13915008..13915250 17..259 100 -> Plus
2L 13916406..13916564 767..925 100 -> Plus
2L 13916926..13917650 1167..1891 100 -> Plus
2L 13917977..13918080 1892..1995 100 -> Plus
2L 13918147..13918245 1996..2094 100 -> Plus
2L 13954717..13954857 2095..2235 100 -> Plus
2L 13955265..13955577 2236..2550 99   Plus
2L 13916621..13916861 926..1166 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:44 Download gff for BO13636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13915008..13915250 17..259 100 -> Plus
arm_2L 13915399..13915905 260..766 100 -> Plus
arm_2L 13916406..13916564 767..925 100 -> Plus
arm_2L 13916621..13916861 926..1166 100 -> Plus
arm_2L 13916926..13917650 1167..1891 100 -> Plus
arm_2L 13917977..13918080 1892..1995 100 -> Plus
arm_2L 13918147..13918245 1996..2094 100 -> Plus
arm_2L 13954717..13954857 2095..2235 100 -> Plus
arm_2L 13955265..13955577 2236..2550 99   Plus

BO13636.pep Sequence

Translation from 16 to 2566

> BO13636.pep
MHSVSLLGCLCLSLSLTLSTGSPQLNLPTPQPEVFYNGYTPNVATTPAQL
RADRDRDQRYGPPYSDAGGGGNTDDGLDDFRFGQTDDERMRIGYGYPTPR
VNFSDSPFSGARFSNHNYGPISSTTERNYGNDANLNGRYSDVPYSSQGER
NFNPNDQYNYNNNPNVEFVGINNRNRFENPFLSNQDRFNLNQGYLERQRY
QQDRRYQQELEKLRILLVESDQKGSLECTANVAAQWNFETNVNDFTQTEA
LNAQQRYVEFQRITAEQSKRINKDLIFDRRLYRQLMLQSEVGPNALPLDV
LDRYNRLLNEMLFLYNSAEICAYQQPFQCDLHYIPQLKDIMAKSRDWDEL
QHTWVEYHRKAGRGMRDSYEQLIDVMQEVAYVNNVTNGGEYWYLAYESGN
FRQDMDIVWEQIRPLYEGLHAYVRRKLRDYYGPDRINRIAPIPSHILGNM
YGQSWSNVLDILIPYPGRKLIDVTPRMVEQGYTPQLMFQLAEEFFTSINM
SAVGPEFYRNSIFEQPLDRRVLCEPSAWDFCNRHDFRVKICTDINQRSLI
SVHHEMAHIQYFLQYRHLPKIFRNGANPAFHQAVGDAIGLSVSTPRHLQT
LGLLQRSLDESSYDINYLFTMAIDKVAFLPFALSLDNWRYDVFSGNANKR
TMNCHYWNLREKYSGIKPPVLRSEKDFDPGAKYHIPANIPYIKYFFSTVL
QFQIYRGLCRESGQYVPGDPRKPLHQCDIYRQPAAGNILKTLMSKGASQP
WQEVLEETLREGRLDGTALREYFAPLEEWLRQENLRTNEYVGWNYDGDYC
KRSIETAGLQVFGGYYNGATGQKSAPFLYPLILLIYLYFSLRLLASFLDH

BO13636.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:58
Subject Length Description Subject Range Query Range Score Percent Strand
Ance-3-PC 844 CG17988-PC 1..844 1..844 4553 100 Plus
Ance-3-PB 844 CG17988-PB 1..844 1..844 4553 100 Plus
Ance-PC 615 CG8827-PC 46..606 234..793 1294 41.5 Plus
Ance-PB 615 CG8827-PB 46..606 234..793 1294 41.5 Plus
Ance-PA 615 CG8827-PA 46..606 234..793 1294 41.5 Plus