Clone Sequence Records
BO13636.3prime Sequence
742 bp (738 high quality bases) assembled on 2006-05-08
> BO13636.3prime
ATGGTCTAGAAAGCTTGCTAATAAACGTAGGCTGAAGTAAAGGTAAATCA
GCAAGATCAGTGGGTATAGGAATGGCGCTGACTTTTGTCCCGTCGCACCA
TTGTAATATCCACCAAAGACCTGCAAGCCAGCAGTTTCGATGCTCCTCTT
GCAGTAGTCACCATCGTAGTTCCATCCCACATACTCGTTCGTCCGCAGAT
TCTCCTGGCGCAGCCATTCCTCCAGTGGAGCAAAGTACTCCCGCAGAGCG
GTTCCATCCAAGCGACCCTCCCTCAGGGTTTCCTCAAGGACCTCTTGCCA
TGGCTGGGAGGCTCCCTTGGACATCAGGGTTTTGAGAATATTTCCCGCTG
CTGGCTGGCGATAAATGTCGCATTGGTGGAGCGGCTTCCTAGGATCACCG
GGCACATACTGGCCGGACTCGCGGCACAGGCCTCGATAGATCTGGAACTG
CAGAACCGTGGAGAAAAAGTATTTGATATAGGGAATATTTGCTGGTATAT
GGTATTTGGCTCCCGGGTCGAAATCCTTTTCTGATCGCAAAACTGGGGGC
TTTATACCGGAATACTTTTCTCGTAAATTCCAGTAGTGACAGTTCATTGT
TCGCTTATTCGCATTGCCACTAAAGACATCATACCGCCAATTGTCCAGAG
ATAATGCAAAAGGTAAAAATGCCACCTTGTCAATGGCCATGGTGAACAGA
TAGTTAATATCATAGCTGGACTCATCGAGGGATCTTTTGTAG
BO13636.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17988-PB | 2535 | Ance-3-RB | 1814..2532 | 737..19 | 3595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ance-3-RC | 3426 | CG17988-RC | 2097..2815 | 737..19 | 3595 | 100 | Minus |
Ance-3-RB | 2981 | CG17988-RB | 2097..2815 | 737..19 | 3595 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:33:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13955265..13955577 | 331..19 | 1565 | 100 | Minus |
2L | 23513712 | 2L | 13954713..13954857 | 476..332 | 710 | 99.3 | Minus |
2L | 23513712 | 2L | 13917975..13918080 | 677..572 | 530 | 100 | Minus |
2L | 23513712 | 2L | 13918146..13918245 | 572..473 | 500 | 100 | Minus |
2L | 23513712 | 2L | 13917589..13917652 | 737..674 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-08 12:33:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Tel | 2485 | Dvir\Tel 2485bp Derived from AF009439 (Rel. 66, Last updated, Version 3). | 1219..1255 | 701..665 | 113 | 78.4 | Minus |
BO13636.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:51 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17988-PB | 1810..2535 | 16..742 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:44 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17988-PB | 1810..2535 | 16..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:38:30 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 2093..2822 | 11..742 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:22:18 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 2093..2822 | 11..742 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:22:18 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13917585..13917650 | 676..742 | 98 | -> | Minus |
2L | 13917977..13918080 | 572..675 | 100 | -> | Minus |
2L | 13918147..13918245 | 473..571 | 100 | -> | Minus |
2L | 13954717..13954857 | 332..472 | 100 | -> | Minus |
2L | 13955265..13955584 | 11..331 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:38:30 Download gff for
BO13636.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13917585..13917650 | 676..742 | 98 | -> | Minus |
arm_2L | 13917977..13918080 | 572..675 | 100 | -> | Minus |
arm_2L | 13918147..13918245 | 473..571 | 100 | -> | Minus |
arm_2L | 13954717..13954857 | 332..472 | 100 | -> | Minus |
arm_2L | 13955265..13955584 | 11..331 | 98 | | Minus |
BO13636.5prime Sequence
809 bp (775 high quality bases) assembled on 2006-05-08
> BO13636.5prime
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTT
GGAACGTCAGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGA
AGCTGCGCATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGC
ACCGCCAATGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTT
TACCCAAACGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGC
GCATCACTG
BO13636.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17988-PB | 2535 | Ance-3-RB | 1..793 | 17..809 | 3965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:21:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ance-3-RC | 3426 | CG17988-RC | 284..1076 | 17..809 | 3965 | 100 | Plus |
Ance-3-RB | 2981 | CG17988-RB | 284..1076 | 17..809 | 3965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13915398..13915905 | 259..766 | 2540 | 100 | Plus |
2L | 23513712 | 2L | 13915008..13915250 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 13916405..13916448 | 766..809 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 14:21:23 has no hits.
BO13636.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:53 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17988-PB | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:45 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17988-PB | 1..793 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 04:15:18 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..1076 | 17..809 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:57:30 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..1076 | 17..809 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:57:30 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13915008..13915250 | 17..259 | 100 | -> | Plus |
2L | 13915399..13915905 | 260..766 | 100 | -> | Plus |
2L | 13916406..13916448 | 767..809 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 04:15:18 Download gff for
BO13636.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13915008..13915250 | 17..259 | 100 | -> | Plus |
arm_2L | 13915399..13915905 | 260..766 | 100 | -> | Plus |
arm_2L | 13916406..13916448 | 767..809 | 100 | | Plus |
BO13636.complete Sequence
2566 bp assembled on 2008-08-14
GenBank Submission: FJ632875
> BO13636.complete
GAAGTTATCAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCC
TCAGCCTTAGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCC
ACCCCGCAGCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCAC
AACTCCGGCCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGAC
CACCTTACTCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGAC
GACTTTAGGTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGG
CTATCCCACGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTA
GGTTTTCCAACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAAT
TACGGCAACGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTC
CTCCCAAGGAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATA
ATAATCCGAATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAG
AATCCCTTCCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTT
GGAACGTCAGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGA
AGCTGCGCATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGC
ACCGCCAATGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTT
TACCCAAACGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGC
GCATCACTGCCGAGCAATCCAAGCGGATCAATAAGGATCTCATCTTCGAC
CGTCGCCTCTACAGACAACTGATGCTGCAGTCGGAAGTGGGACCCAATGC
TCTGCCCCTAGATGTATTGGATAGGTATAATCGCCTGCTCAATGAGATGC
TGTTCCTGTACAACAGCGCCGAAATCTGTGCCTACCAGCAGCCCTTTCAG
TGCGATCTTCACTACATACCCCAGCTGAAGGACATCATGGCCAAGAGCAG
GGACTGGGATGAGCTGCAGCACACTTGGGTGGAATACCACAGGAAGGCGG
GACGCGGAATGCGGGATAGTTATGAGCAGTTGATCGATGTGATGCAGGAG
GTGGCCTACGTAAACAATGTCACTAATGGCGGGGAGTATTGGTATTTGGC
CTACGAGTCGGGTAACTTTCGCCAGGATATGGACATTGTTTGGGAACAGA
TAAGGCCTCTTTACGAAGGATTGCATGCCTATGTACGTCGCAAGCTGAGG
GATTACTATGGTCCAGATCGGATAAACCGCATAGCACCCATTCCCTCGCA
CATTCTGGGCAACATGTACGGCCAGTCGTGGTCCAATGTGTTGGACATTT
TGATACCCTATCCAGGCCGGAAGCTGATCGACGTCACGCCGCGAATGGTG
GAACAGGGCTACACACCGCAACTGATGTTCCAGTTGGCCGAGGAGTTCTT
CACCTCCATTAATATGTCTGCGGTGGGTCCGGAGTTCTATCGCAACTCCA
TCTTCGAACAGCCCCTGGATCGGAGGGTCCTGTGTGAGCCATCCGCCTGG
GACTTTTGCAATCGTCACGATTTCCGCGTTAAAATCTGTACGGATATCAA
TCAGCGAAGTTTGATTAGTGTGCACCATGAGATGGCGCACATTCAGTACT
TTCTGCAGTATCGTCACCTGCCCAAGATCTTCAGAAATGGAGCGAATCCG
GCATTTCACCAGGCGGTGGGCGATGCCATTGGCCTGTCCGTATCAACTCC
AAGGCATTTGCAGACTCTGGGACTACTACAAAGATCCCTCGATGAGTCCA
GCTATGATATTAACTATCTGTTCACCATGGCCATTGACAAGGTGGCATTT
TTACCTTTTGCATTATCTCTGGACAATTGGCGGTATGATGTCTTTAGTGG
CAATGCGAATAAGCGAACAATGAACTGTCACTACTGGAATTTACGAGAAA
AGTATTCCGGTATAAAGCCCCCAGTTTTGCGATCAGAAAAGGATTTCGAC
CCGGGAGCCAAATACCATATACCAGCAAATATTCCCTATATCAAATACTT
TTTCTCCACGGTTCTGCAGTTCCAGATCTATCGAGGCCTGTGCCGCGAGT
CCGGCCAGTATGTGCCCGGTGATCCTAGGAAGCCGCTCCACCAATGCGAC
ATTTATCGCCAGCCAGCAGCGGGAAATATTCTCAAAACCCTGATGTCCAA
GGGAGCCTCCCAGCCATGGCAAGAGGTCCTTGAGGAAACCCTGAGGGAGG
GTCGCTTGGATGGAACCGCTCTGCGGGAGTACTTTGCTCCACTGGAGGAA
TGGCTGCGCCAGGAGAATCTGCGGACGAACGAGTATGTGGGATGGAACTA
CGATGGTGACTACTGCAAGAGGAGCATCGAAACTGCTGGCTTGCAGGTCT
TTGGTGGATATTACAATGGTGCGACGGGACAAAAGTCAGCGCCATTCCTA
TACCCACTGATCTTGCTGATTTACCTTTACTTCAGCCTACGTTTATTAGC
AAGCTTTCTAGACCAT
BO13636.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:28:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ance-3-RC | 2535 | CG17988-PC | 1..2532 | 17..2548 | 12660 | 100 | Plus |
Ance-3-RB | 2535 | CG17988-PB | 1..2532 | 17..2548 | 12660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:28:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ance-3-RC | 3426 | CG17988-RC | 284..2815 | 17..2548 | 12660 | 100 | Plus |
Ance-3-RB | 2981 | CG17988-RB | 284..2815 | 17..2548 | 12660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:28:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13916926..13917652 | 1167..1893 | 3635 | 100 | Plus |
2L | 23513712 | 2L | 13915398..13915905 | 259..766 | 2540 | 100 | Plus |
2L | 23513712 | 2L | 13955265..13955577 | 2236..2548 | 1565 | 100 | Plus |
2L | 23513712 | 2L | 13915008..13915250 | 17..259 | 1215 | 100 | Plus |
2L | 23513712 | 2L | 13916620..13916861 | 925..1166 | 1210 | 100 | Plus |
2L | 23513712 | 2L | 13916405..13916564 | 766..925 | 800 | 100 | Plus |
2L | 23513712 | 2L | 13954713..13954857 | 2091..2235 | 710 | 99.3 | Plus |
2L | 23513712 | 2L | 13917975..13918080 | 1890..1995 | 530 | 100 | Plus |
2L | 23513712 | 2L | 13918146..13918245 | 1995..2094 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:28:15 has no hits.
BO13636.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:37:33 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..2822 | 17..2556 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:44 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..2815 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 10:55:17 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..2815 | 17..2550 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:13 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ance-3-RB | 284..2815 | 17..2550 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:13 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13915399..13915905 | 260..766 | 100 | -> | Plus |
2L | 13915008..13915250 | 17..259 | 100 | -> | Plus |
2L | 13916406..13916564 | 767..925 | 100 | -> | Plus |
2L | 13916926..13917650 | 1167..1891 | 100 | -> | Plus |
2L | 13917977..13918080 | 1892..1995 | 100 | -> | Plus |
2L | 13918147..13918245 | 1996..2094 | 100 | -> | Plus |
2L | 13954717..13954857 | 2095..2235 | 100 | -> | Plus |
2L | 13955265..13955577 | 2236..2550 | 99 | | Plus |
2L | 13916621..13916861 | 926..1166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:44 Download gff for
BO13636.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13915008..13915250 | 17..259 | 100 | -> | Plus |
arm_2L | 13915399..13915905 | 260..766 | 100 | -> | Plus |
arm_2L | 13916406..13916564 | 767..925 | 100 | -> | Plus |
arm_2L | 13916621..13916861 | 926..1166 | 100 | -> | Plus |
arm_2L | 13916926..13917650 | 1167..1891 | 100 | -> | Plus |
arm_2L | 13917977..13918080 | 1892..1995 | 100 | -> | Plus |
arm_2L | 13918147..13918245 | 1996..2094 | 100 | -> | Plus |
arm_2L | 13954717..13954857 | 2095..2235 | 100 | -> | Plus |
arm_2L | 13955265..13955577 | 2236..2550 | 99 | | Plus |
BO13636.pep Sequence
Translation from 16 to 2566
> BO13636.pep
MHSVSLLGCLCLSLSLTLSTGSPQLNLPTPQPEVFYNGYTPNVATTPAQL
RADRDRDQRYGPPYSDAGGGGNTDDGLDDFRFGQTDDERMRIGYGYPTPR
VNFSDSPFSGARFSNHNYGPISSTTERNYGNDANLNGRYSDVPYSSQGER
NFNPNDQYNYNNNPNVEFVGINNRNRFENPFLSNQDRFNLNQGYLERQRY
QQDRRYQQELEKLRILLVESDQKGSLECTANVAAQWNFETNVNDFTQTEA
LNAQQRYVEFQRITAEQSKRINKDLIFDRRLYRQLMLQSEVGPNALPLDV
LDRYNRLLNEMLFLYNSAEICAYQQPFQCDLHYIPQLKDIMAKSRDWDEL
QHTWVEYHRKAGRGMRDSYEQLIDVMQEVAYVNNVTNGGEYWYLAYESGN
FRQDMDIVWEQIRPLYEGLHAYVRRKLRDYYGPDRINRIAPIPSHILGNM
YGQSWSNVLDILIPYPGRKLIDVTPRMVEQGYTPQLMFQLAEEFFTSINM
SAVGPEFYRNSIFEQPLDRRVLCEPSAWDFCNRHDFRVKICTDINQRSLI
SVHHEMAHIQYFLQYRHLPKIFRNGANPAFHQAVGDAIGLSVSTPRHLQT
LGLLQRSLDESSYDINYLFTMAIDKVAFLPFALSLDNWRYDVFSGNANKR
TMNCHYWNLREKYSGIKPPVLRSEKDFDPGAKYHIPANIPYIKYFFSTVL
QFQIYRGLCRESGQYVPGDPRKPLHQCDIYRQPAAGNILKTLMSKGASQP
WQEVLEETLREGRLDGTALREYFAPLEEWLRQENLRTNEYVGWNYDGDYC
KRSIETAGLQVFGGYYNGATGQKSAPFLYPLILLIYLYFSLRLLASFLDH
BO13636.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:16:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ance-3-PC | 844 | CG17988-PC | 1..844 | 1..844 | 4553 | 100 | Plus |
Ance-3-PB | 844 | CG17988-PB | 1..844 | 1..844 | 4553 | 100 | Plus |
Ance-PC | 615 | CG8827-PC | 46..606 | 234..793 | 1294 | 41.5 | Plus |
Ance-PB | 615 | CG8827-PB | 46..606 | 234..793 | 1294 | 41.5 | Plus |
Ance-PA | 615 | CG8827-PA | 46..606 | 234..793 | 1294 | 41.5 | Plus |