Clone Sequence Records
BO13637.3prime Sequence
882 bp (743 high quality bases) assembled on 2006-05-08
> BO13637.3prime
ATGGTCTAGAAAGCTTGCTGTGATTAAATACTTTTGCAGATTCTCGCACG
ATGGCGTATTGATGTTCTGCGCCTTTCTGTACAGATCCCGATCGCCAAAG
GTACGCGCCTTGGCCAGCATTGAGTCGCGATAATTCCTCTCTCGACTGCA
GGAGTGTTTTAGATGATTCACAAAGTCCTCTTCCACGGATTCCTCTAATC
GGGCCACTGATCCCTGATATTCTGAATAGAAGTTGTCCTTTACGTAGTAT
GGTACCTTCAGGGAGTTCGTCTCACGCTTCACCGAATATTTATGAGAGGG
CGTCAAGCTGTACATTGGGTCCGAGATGAAGAAGGACGACATCATGGAGA
GTCCAATGAGCAGCACGATGGGCAGCAAGTTTACCAAGGCCGAAGAGTTG
TTACCTTCTCGATCCTCGCGAGCCTGCTGACGACGTCGCTGCTGCCGCAT
ATGGACATTCTGCTGTGGGAATCCGCCGTTGAAGAACATGTTGAACAGCT
CCTCGGCACTGATGTCAGCCTGGAATCCACGCGAATATCCATACTCGTTG
TTGTAGTATTGCCCGTGTCCATGGTGTCCGCCACCATTGTTGCCGTGACC
ATTGTGCGACTCATTGATGCCATACAGATCGTAGTTCTTGCGCTTTTCGG
CATCCGTAAGTACGCCAGCAGCATTGCCGAGAGCCTTGAAAGCCTCCACC
GCACCAGGAGCCTTATTCTTGTCGGGATGCAATTGCAGAGCTAGCTTCTT
GTAAGCCTTTTTGATCTCCGAATCAGTGGCCGTCTTGCTAACGCCCAGTA
CTTCGTAGTAGTCCTTACATGTTTTGACCTTTCGCACAGCTTCCAACTGA
TCCTTGGTGTAATCGGGGGCACTGGAACGGGA
BO13637.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-PA | 1113 | CG3061-RA | 247..1110 | 882..19 | 4245 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-RA | 1981 | CG3061-RA | 566..1429 | 882..19 | 4275 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:36:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14033506..14033921 | 820..405 | 2065 | 99.8 | Minus |
| 3R | 32079331 | 3R | 14034162..14034326 | 292..128 | 825 | 100 | Minus |
| 3R | 32079331 | 3R | 14033987..14034099 | 405..293 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 14034380..14034489 | 128..19 | 550 | 100 | Minus |
| 3R | 32079331 | 3R | 14033380..14033441 | 882..821 | 280 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:36:40 has no hits.
BO13637.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:54 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-PA | 248..1113 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:46 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-PA | 248..1113 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:48 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 567..1435 | 11..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:17 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 567..1435 | 11..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:17 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14034162..14034325 | 129..292 | 100 | -> | Minus |
| 3R | 14034380..14034495 | 11..128 | 96 | | Minus |
| 3R | 14033381..14033441 | 821..881 | 96 | -> | Minus |
| 3R | 14033506..14033920 | 406..820 | 99 | -> | Minus |
| 3R | 14033987..14034099 | 293..405 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:48 Download gff for
BO13637.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9859103..9859163 | 821..881 | 96 | -> | Minus |
| arm_3R | 9859228..9859642 | 406..820 | 99 | -> | Minus |
| arm_3R | 9859709..9859821 | 293..405 | 100 | -> | Minus |
| arm_3R | 9859884..9860047 | 129..292 | 100 | -> | Minus |
| arm_3R | 9860102..9860217 | 11..128 | 96 | | Minus |
BO13637.5prime Sequence
839 bp (736 high quality bases) assembled on 2006-05-08
> BO13637.5prime
GAAGTTATCAGTCGACATGGACGGAAACAAGGACGAGGCCCAGCGGTGCA
TCGACTTCGCGGTCCAAGCGCTCGCCGCGGGCAAAATCGAAAAGGCCGAG
AAGTTCCTTCTCAAGGCGGAGAGGCTCTTTCCTACGGATAATGCCAAAAA
GCTACTTGCCCAGTTGAAGAGCACTCCGAGCAACGAAAGCAATGGCAAAT
CCCGTACAGCGGGTGCCAGCGATGAGAAGGACAGCGGGCCGAGGAAACGT
GTGAACTCGGATTCCCGTTCCAGTGCCCCAGATTACACCAAAGATCAGTT
GGAAGCTGTGCGAAAGGTCAAAACATGTAAGGACTACTACGAAGTACTGG
GCGTTAGCAAGACGGCCACTGATTCGGAGATCAAAAAGGCCTACAAGAAG
CTAGCTCTGCAATTGCATCCCGACAAGAATAAGGCTCCTGGTGCGGTGGA
GGCTTTCAAGGCTCTCGGCAATGCTGCTGGCGTACTTACGGATGCCGAAA
AGCGCAAGAACTACGATCTGTATGGCATCAATGAGTCGCACAATGGTCAC
GGCAACAATGGTGGCGGACACCATGGACACGGGCAATACTACAACAACGA
GTATGGATATTCGCGTGGATTCCAGGCTGACATCAGTGCCGAGGAGCTGT
TCAACATGTTCTTCAACGGCGGATTCCCACAGCAGAATGTCCATATGCGG
CAGCAGCGACGTCGTCAGCAGGCTCGCGAGGATCGAGAAGGTAACAACTC
TTCGGCCTTGGTAAACTTGCTGCCCATCGTGCTGCTCATTGGACTCTCCA
TGATGTCGTCCTTCTTCATCTCGGACCCAATGTACAGCT
BO13637.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-PA | 1113 | CG3061-RA | 1..823 | 17..839 | 4115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-RA | 1981 | CG3061-RA | 319..1142 | 16..839 | 4120 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:30:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14033506..14033921 | 325..740 | 2080 | 100 | Plus |
| 3R | 32079331 | 3R | 14033267..14033441 | 150..324 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 14032689..14032822 | 16..149 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 14033987..14034086 | 740..839 | 500 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:30:27 has no hits.
BO13637.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:55 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:48 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-PA | 1..823 | 17..839 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:03:31 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 313..1142 | 10..839 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:05:59 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 313..1142 | 10..839 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:05:59 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14032683..14032822 | 10..149 | 98 | -> | Plus |
| 3R | 14033267..14033441 | 150..324 | 100 | -> | Plus |
| 3R | 14033506..14033920 | 325..739 | 100 | -> | Plus |
| 3R | 14033987..14034086 | 740..839 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:03:31 Download gff for
BO13637.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9858989..9859163 | 150..324 | 100 | -> | Plus |
| arm_3R | 9858405..9858544 | 10..149 | 98 | -> | Plus |
| arm_3R | 9859228..9859642 | 325..739 | 100 | -> | Plus |
| arm_3R | 9859709..9859808 | 740..839 | 100 | | Plus |
BO13637.complete Sequence
1144 bp assembled on 2006-10-11
GenBank Submission: FJ632876
> BO13637.complete
GAAGTTATCAGTCGACATGGACGGAAACAAGGACGAGGCCCAGCGGTGCA
TCGACTTCGCGGTCCAAGCGCTCGCCGCGGGCAAAATCGAAAAGGCCGAG
AAGTTCCTTCTCAAGGCGGAGAGGCTCTTTCCTACGGATAATGCCAAAAA
GCTACTTGCCCAGTTGAAGAGCACTCCGAGCAACGAAAGCAATGGCAAAT
CCCGTACAGCGGGTGCCAGCGATGAGAAGGACAGCGGGCCGAGGAAACGT
GTGAACTCGGATTCCCGTTCCAGTGCCCCAGATTACACCAAAGATCAGTT
GGAAGCTGTGCGAAAGGTCAAAACATGTAAGGACTACTACGAAGTACTGG
GCGTTAGCAAGACGGCCACTGATTCGGAGATCAAAAAGGCCTACAAGAAG
CTAGCTCTGCAATTGCATCCCGACAAGAATAAGGCTCCTGGTGCGGTGGA
GGCTTTCAAGGCTCTCGGCAATGCTGCTGGCGTACTTACGGATGCCGAAA
AGCGCAAGAACTACGATCTGTATGGCATCAATGAGTCGCACAATGGTCAC
GGCAACAATGGTGGCGGACACCATGGACACGGGCAATACTACAACAACGA
GTATGGATATTCGCGTGGATTCCAGGCTGACATCAGTGCCGAGGAGCTGT
TCAACATGTTCTTCAACGGCGGATTCCCACAGCAGAATGTCCATATGCGG
CAGCAGCGACGTCGTCAGCAGGCTCGCGAGGATCGAGAAGGTAACAACTC
TTCGGCCTTGGTAAACTTGCTGCCCATCGTGCTGCTCATTGGACTCTCCA
TGATGTCGTCCTTCTTCATCTCGGACCCAATGTACAGCTTGACGCCCTCT
CATAAATATTCGGTGAAGCGTGAGACGAACTCCCTGAAGGTACCATACTA
CGTAAAGGACAACTTCTATTCAGAATATCAGGGATCAGTGGCCCGATTAG
AGGAATCCGTGGAAGAGGACTTTGTGAATCATCTAAAACACTCCTGCAGT
CGAGAGAGGAATTATCGCGACTCAATGCTGGCCAAGGCGCGTACCTTTGG
CGATCGGGATCTGTACAGAAAGGCGCAGAACATCAATACGCCATCGTGCG
AGAATCTGCAAAAGTATTTAATCACAGCAAGCTTTCTAGACCAT
BO13637.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:43:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-RA | 1113 | CG3061-PA | 1..1110 | 17..1126 | 5550 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:43:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-RA | 1981 | CG3061-RA | 319..1429 | 16..1126 | 5555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:43:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14033506..14033921 | 325..740 | 2080 | 100 | Plus |
| 3R | 32079331 | 3R | 14033267..14033441 | 150..324 | 875 | 100 | Plus |
| 3R | 32079331 | 3R | 14034162..14034326 | 853..1017 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 14032689..14032822 | 16..149 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 14033987..14034099 | 740..852 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 14034380..14034489 | 1017..1126 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:43:22 has no hits.
BO13637.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:48 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 1..1113 | 17..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:49 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 317..1439 | 10..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:58:14 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 320..1429 | 17..1128 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:48 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 317..1439 | 10..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:25:30 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3061-RA | 320..1429 | 17..1128 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:25:30 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14032690..14032822 | 17..149 | 100 | -> | Plus |
| 3R | 14033267..14033441 | 150..324 | 100 | -> | Plus |
| 3R | 14033506..14033920 | 325..739 | 100 | -> | Plus |
| 3R | 14033987..14034099 | 740..852 | 100 | -> | Plus |
| 3R | 14034162..14034325 | 853..1016 | 100 | -> | Plus |
| 3R | 14034380..14034489 | 1017..1128 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:58:14 Download gff for
BO13637.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9859228..9859642 | 325..739 | 100 | -> | Plus |
| arm_3R | 9859709..9859821 | 740..852 | 100 | -> | Plus |
| arm_3R | 9858412..9858544 | 17..149 | 100 | -> | Plus |
| arm_3R | 9858989..9859163 | 150..324 | 100 | -> | Plus |
| arm_3R | 9859884..9860047 | 853..1016 | 100 | -> | Plus |
| arm_3R | 9860102..9860211 | 1017..1128 | 98 | | Plus |
BO13637.pep Sequence
Translation from 16 to 1144
> BO13637.pep
MDGNKDEAQRCIDFAVQALAAGKIEKAEKFLLKAERLFPTDNAKKLLAQL
KSTPSNESNGKSRTAGASDEKDSGPRKRVNSDSRSSAPDYTKDQLEAVRK
VKTCKDYYEVLGVSKTATDSEIKKAYKKLALQLHPDKNKAPGAVEAFKAL
GNAAGVLTDAEKRKNYDLYGINESHNGHGNNGGGHHGHGQYYNNEYGYSR
GFQADISAEELFNMFFNGGFPQQNVHMRQQRRRQQAREDREGNNSSALVN
LLPIVLLIGLSMMSSFFISDPMYSLTPSHKYSVKRETNSLKVPYYVKDNF
YSEYQGSVARLEESVEEDFVNHLKHSCSRERNYRDSMLAKARTFGDRDLY
RKAQNINTPSCENLQKYLITASFLDH
BO13637.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3061-PA | 370 | CG3061-PA | 1..370 | 1..370 | 1926 | 100 | Plus |
| CG30156-PB | 358 | CG30156-PB | 11..334 | 11..364 | 364 | 29.2 | Plus |
| CG30156-PA | 358 | CG30156-PA | 11..334 | 11..364 | 364 | 29.2 | Plus |
| CG5001-PC | 346 | CG5001-PC | 3..81 | 105..183 | 227 | 57 | Plus |
| CG5001-PD | 350 | CG5001-PD | 3..81 | 105..183 | 227 | 57 | Plus |
