Clone BO13638 Report

Search the DGRC for BO13638

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG33470-RA
Protein status:BO13638.pep: validated full length
Sequenced Size:805

Clone Sequence Records

BO13638.3prime Sequence

794 bp (740 high quality bases) assembled on 2006-05-08

> BO13638.3prime
ATGGTCTAGAAAGCTTGCGTAGTGCTGAGCGGGACGTCCCCTTCCGGACA
CGATGGTATGACCATTCCTATCGATTGTGACAGTGCGTCCGTCCGGACGC
TTCCAAACGGAGACATTATTGTCCCAAATTCCTGCCTGATCGTCGCGGGC
CACAAAGTTCTCACCCTGGACGCGGGCATCGTTGATCCCACGGCGGAAAC
GTTGAGCGGAGAAGCCACCGTTACCGAAATCAACAGTGCGATCTGGTCGC
TCCACATGGAACTGTGGACTGCGTCGACTGCGTTGAATATAGACGCCGCC
ATTACCAATGGTTACGGTGCGATCTGGGCGTGCCACATGAAGCTGTGGAC
TGCGTCGGCCACGCTGAATGTAGAATCCTCCGTTTCCAACGTCAACAGTG
CGACCGGGACGCTCTACGTGAAACTGCGGACTGCGCCGGGCACGTTGTGG
GATTCCCACGCTCTTAGCTCCATTGGGCCCTAAATTTTTGGCGGAAAAAT
TGGGACCACTGATGGTGTGGGAAGCTGGTCCACCAGCGTTCTTTCGGTTA
ACAAACGTGTTGCCCGCCTCATCGGTGTACACATGCTCACCCCGTTGAGG
AGCGTTTTGGAACTGGCCACCCACTCCCGGCACGCTGTAGGTGCCTTCAT
TCTGGCCCCTTATATAGACCTGATTGCCCGGTGAACCGAAGACATGCGGC
CCATTGCGACCGTCGTAGGTGTGTTGTGGTTCCGCAGCCGACGCAAATAA
CGCCACAGATAGCCAGTGCAATCCATCCAAACGATTTCATGTCG

BO13638.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PA 774 CG33470-RA 52..771 738..19 3600 100 Minus
CG18279-PA 774 IM10-RA 52..771 738..19 3600 100 Minus
CG33470-PB 807 CG33470-RB 52..768 738..22 3585 100 Minus
CG18279-PB 807 IM10-RB 52..768 738..22 3585 100 Minus
CG33470-PA 774 CG33470-RA 1..52 790..739 210 96.1 Minus
CG18279-PA 774 IM10-RA 1..52 790..739 210 96.1 Minus
CG33470-PB 807 CG33470-RB 1..52 790..739 210 96.1 Minus
CG18279-PB 807 IM10-RB 1..52 790..739 210 96.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:39:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 32..802 790..19 3805 99.6 Minus
CG33470-RA 1159 CG33470-RA 32..802 790..19 3805 99.6 Minus
IM10-RC 1160 CG18279-RC 33..803 790..19 3805 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407942 527..22 2530 100 Minus
2R 25286936 2R 13412164..13412669 527..22 2530 100 Minus
2R 25286936 2R 13407167..13407380 738..525 1070 100 Minus
2R 25286936 2R 13411894..13412107 738..525 1070 100 Minus
2R 25286936 2R 8934132..8934239 186..79 300 85.2 Minus
2R 25286936 2R 13407043..13407095 790..738 235 96.2 Minus
2R 25286936 2R 13411770..13411822 790..738 235 96.2 Minus
Blast to na_te.dros performed on 2015-02-08 12:39:14 has no hits.

BO13638.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:56 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
IM10-PA 1..774 16..790 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:49 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18279-PA 1..774 16..790 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:23 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 28..814 9..794 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:02 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 29..815 9..794 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:02 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13407039..13407094 738..794 91 -> Minus
2R 13407168..13407380 525..737 100 -> Minus
2R 13407440..13407953 12..524 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:23 Download gff for BO13638.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294673..9294885 525..737 100 -> Minus
arm_2R 9294544..9294599 738..794 91 -> Minus
arm_2R 9294945..9295458 12..524 99   Minus

BO13638.5prime Sequence

764 bp (702 high quality bases) assembled on 2006-05-08

> BO13638.5prime
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAACGTCCGGACGGACCCACTGTCACAATCGATTAGGAATGGTCATA
CCATCGTGTCCGGA

BO13638.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PA 774 CG33470-RA 1..720 17..736 3550 99.7 Plus
CG33470-PB 807 CG33470-RB 1..720 17..736 3550 99.7 Plus
CG18279-PA 774 IM10-RA 1..720 17..736 3550 99.7 Plus
CG18279-PB 807 IM10-RB 1..720 17..736 3550 99.7 Plus
CG33470-PA 774 CG33470-RA 720..747 737..764 140 100 Plus
CG33470-PB 807 CG33470-RB 720..747 737..764 140 100 Plus
CG18279-PA 774 IM10-RA 720..747 737..764 140 100 Plus
CG18279-PB 807 IM10-RB 720..747 737..764 140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 32..778 17..764 3685 99.6 Plus
CG33470-RA 1159 CG33470-RA 32..778 17..764 3685 99.6 Plus
IM10-RC 1160 CG18279-RC 33..779 17..764 3685 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407921 279..764 2350 99.4 Plus
2R 25286936 2R 13412164..13412648 279..764 2350 99.4 Plus
2R 25286936 2R 13407167..13407380 68..281 1070 100 Plus
2R 25286936 2R 13411894..13412107 68..281 1070 100 Plus
2R 25286936 2R 8934132..8934239 620..727 270 83.3 Plus
2R 25286936 2R 13407043..13407094 17..68 260 100 Plus
2R 25286936 2R 13411770..13411821 17..68 260 100 Plus
Blast to na_te.dros performed on 2015-02-12 11:07:13 has no hits.

BO13638.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:57 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33470-PB 1..746 17..763 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:51 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18279-PA 1..746 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:50 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 23..777 9..763 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:25 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 24..778 9..763 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:25 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13407034..13407094 9..68 95 -> Plus
2R 13407168..13407380 69..281 100 -> Plus
2R 13407440..13407920 282..763 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:50 Download gff for BO13638.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294539..9294599 9..68 95 -> Plus
arm_2R 9294673..9294885 69..281 100 -> Plus
arm_2R 9294945..9295425 282..763 99   Plus

BO13638.complete Sequence

805 bp assembled on 2006-10-11

GenBank Submission: FJ632877

> BO13638.complete
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGGACGGACGCACTGTCACAATCGATAGGAATGGTCATAC
CATCGTGTCCGGAAGGGGACGTCCCGCTCAGCACTACGCAAGCTTTCTAG
ACCAT

BO13638.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 774 CG33470-PC 1..771 17..787 3855 100 Plus
CG33470-RA 774 CG33470-PA 1..771 17..787 3855 100 Plus
IM10-RC 774 CG18279-PC 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-RC 904 CG33470-RC 32..802 17..787 3855 100 Plus
CG33470-RA 1159 CG33470-RA 32..802 17..787 3855 100 Plus
IM10-RC 1160 CG18279-RC 33..803 17..787 3855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13407437..13407942 279..784 2530 100 Plus
2R 25286936 2R 13412164..13412669 279..784 2530 100 Plus
2R 25286936 2R 13407167..13407380 68..281 1070 100 Plus
2R 25286936 2R 13411894..13412107 68..281 1070 100 Plus
2R 25286936 2R 8934132..8934239 620..727 300 85.2 Plus
2R 25286936 2R 13407043..13407094 17..68 260 100 Plus
2R 25286936 2R 13411770..13411821 17..68 260 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:23:48 has no hits.

BO13638.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:49 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 1..774 17..790 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:51 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 29..820 9..797 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:57 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RC 32..802 17..789 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:50 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
CG33470-RA 29..820 9..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:05 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
IM10-RC 33..803 17..789 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:05 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13407168..13407380 69..281 100 -> Plus
2R 13407043..13407094 17..68 100 -> Plus
2R 13407440..13407948 282..789 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:57 Download gff for BO13638.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9294548..9294599 17..68 100 -> Plus
arm_2R 9294673..9294885 69..281 100 -> Plus
arm_2R 9294945..9295453 282..789 99   Plus

BO13638.pep Sequence

Translation from 16 to 805

> BO13638.pep
MKSFGLIALAICGVICVAAEPQHTYDGRNGPHVFGSPGNQVYIRGQNEGT
YSVPGVGGQFQNAPQRGEHVYTDEAGNTFVNRKNAGGPASHTISGPNFSA
KNLGPNGAKSVGIPQRARRSPQFHVERPGRTVDVGNGGFYIQRGRRSPQL
HVARPDRTVTIGNGGVYIQRSRRSPQFHVERPDRTVDFGNGGFSAQRFRR
GINDARVQGENFVARDDQAGIWDNNVSVWKRPDGRTVTIDRNGHTIVSGR
GRPAQHYASFLDH

BO13638.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG33470-PC 257 CG33470-PC 1..257 1..257 1388 100 Plus
CG33470-PA 257 CG33470-PA 1..257 1..257 1388 100 Plus
IM10-PC 257 CG18279-PC 1..257 1..257 1388 100 Plus
IM10-PA 257 CG18279-PA 1..257 1..257 1388 100 Plus
CG13749-PB 183 CG13749-PB 17..176 18..182 557 61.8 Plus