Clone Sequence Records
BO13638.3prime Sequence
794 bp (740 high quality bases) assembled on 2006-05-08
> BO13638.3prime
ATGGTCTAGAAAGCTTGCGTAGTGCTGAGCGGGACGTCCCCTTCCGGACA
CGATGGTATGACCATTCCTATCGATTGTGACAGTGCGTCCGTCCGGACGC
TTCCAAACGGAGACATTATTGTCCCAAATTCCTGCCTGATCGTCGCGGGC
CACAAAGTTCTCACCCTGGACGCGGGCATCGTTGATCCCACGGCGGAAAC
GTTGAGCGGAGAAGCCACCGTTACCGAAATCAACAGTGCGATCTGGTCGC
TCCACATGGAACTGTGGACTGCGTCGACTGCGTTGAATATAGACGCCGCC
ATTACCAATGGTTACGGTGCGATCTGGGCGTGCCACATGAAGCTGTGGAC
TGCGTCGGCCACGCTGAATGTAGAATCCTCCGTTTCCAACGTCAACAGTG
CGACCGGGACGCTCTACGTGAAACTGCGGACTGCGCCGGGCACGTTGTGG
GATTCCCACGCTCTTAGCTCCATTGGGCCCTAAATTTTTGGCGGAAAAAT
TGGGACCACTGATGGTGTGGGAAGCTGGTCCACCAGCGTTCTTTCGGTTA
ACAAACGTGTTGCCCGCCTCATCGGTGTACACATGCTCACCCCGTTGAGG
AGCGTTTTGGAACTGGCCACCCACTCCCGGCACGCTGTAGGTGCCTTCAT
TCTGGCCCCTTATATAGACCTGATTGCCCGGTGAACCGAAGACATGCGGC
CCATTGCGACCGTCGTAGGTGTGTTGTGGTTCCGCAGCCGACGCAAATAA
CGCCACAGATAGCCAGTGCAATCCATCCAAACGATTTCATGTCG
BO13638.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PA | 774 | CG33470-RA | 52..771 | 738..19 | 3600 | 100 | Minus |
CG18279-PA | 774 | IM10-RA | 52..771 | 738..19 | 3600 | 100 | Minus |
CG33470-PB | 807 | CG33470-RB | 52..768 | 738..22 | 3585 | 100 | Minus |
CG18279-PB | 807 | IM10-RB | 52..768 | 738..22 | 3585 | 100 | Minus |
CG33470-PA | 774 | CG33470-RA | 1..52 | 790..739 | 210 | 96.1 | Minus |
CG18279-PA | 774 | IM10-RA | 1..52 | 790..739 | 210 | 96.1 | Minus |
CG33470-PB | 807 | CG33470-RB | 1..52 | 790..739 | 210 | 96.1 | Minus |
CG18279-PB | 807 | IM10-RB | 1..52 | 790..739 | 210 | 96.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 12:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 32..802 | 790..19 | 3805 | 99.6 | Minus |
CG33470-RA | 1159 | CG33470-RA | 32..802 | 790..19 | 3805 | 99.6 | Minus |
IM10-RC | 1160 | CG18279-RC | 33..803 | 790..19 | 3805 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 12:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407942 | 527..22 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 13412164..13412669 | 527..22 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 13407167..13407380 | 738..525 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 13411894..13412107 | 738..525 | 1070 | 100 | Minus |
2R | 25286936 | 2R | 8934132..8934239 | 186..79 | 300 | 85.2 | Minus |
2R | 25286936 | 2R | 13407043..13407095 | 790..738 | 235 | 96.2 | Minus |
2R | 25286936 | 2R | 13411770..13411822 | 790..738 | 235 | 96.2 | Minus |
Blast to na_te.dros performed on 2015-02-08 12:39:14 has no hits.
BO13638.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:56 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-PA | 1..774 | 16..790 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:49 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18279-PA | 1..774 | 16..790 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:39:23 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 28..814 | 9..794 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:23:02 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 29..815 | 9..794 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:23:02 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407039..13407094 | 738..794 | 91 | -> | Minus |
2R | 13407168..13407380 | 525..737 | 100 | -> | Minus |
2R | 13407440..13407953 | 12..524 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:39:23 Download gff for
BO13638.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294673..9294885 | 525..737 | 100 | -> | Minus |
arm_2R | 9294544..9294599 | 738..794 | 91 | -> | Minus |
arm_2R | 9294945..9295458 | 12..524 | 99 | | Minus |
BO13638.5prime Sequence
764 bp (702 high quality bases) assembled on 2006-05-08
> BO13638.5prime
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAACGTCCGGACGGACCCACTGTCACAATCGATTAGGAATGGTCATA
CCATCGTGTCCGGA
BO13638.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PA | 774 | CG33470-RA | 1..720 | 17..736 | 3550 | 99.7 | Plus |
CG33470-PB | 807 | CG33470-RB | 1..720 | 17..736 | 3550 | 99.7 | Plus |
CG18279-PA | 774 | IM10-RA | 1..720 | 17..736 | 3550 | 99.7 | Plus |
CG18279-PB | 807 | IM10-RB | 1..720 | 17..736 | 3550 | 99.7 | Plus |
CG33470-PA | 774 | CG33470-RA | 720..747 | 737..764 | 140 | 100 | Plus |
CG33470-PB | 807 | CG33470-RB | 720..747 | 737..764 | 140 | 100 | Plus |
CG18279-PA | 774 | IM10-RA | 720..747 | 737..764 | 140 | 100 | Plus |
CG18279-PB | 807 | IM10-RB | 720..747 | 737..764 | 140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 11:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 32..778 | 17..764 | 3685 | 99.6 | Plus |
CG33470-RA | 1159 | CG33470-RA | 32..778 | 17..764 | 3685 | 99.6 | Plus |
IM10-RC | 1160 | CG18279-RC | 33..779 | 17..764 | 3685 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 11:07:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407921 | 279..764 | 2350 | 99.4 | Plus |
2R | 25286936 | 2R | 13412164..13412648 | 279..764 | 2350 | 99.4 | Plus |
2R | 25286936 | 2R | 13407167..13407380 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 13411894..13412107 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 8934132..8934239 | 620..727 | 270 | 83.3 | Plus |
2R | 25286936 | 2R | 13407043..13407094 | 17..68 | 260 | 100 | Plus |
2R | 25286936 | 2R | 13411770..13411821 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 11:07:13 has no hits.
BO13638.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:57 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-PB | 1..746 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:51 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18279-PA | 1..746 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:18:50 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 23..777 | 9..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:25:25 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 24..778 | 9..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:25:25 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407034..13407094 | 9..68 | 95 | -> | Plus |
2R | 13407168..13407380 | 69..281 | 100 | -> | Plus |
2R | 13407440..13407920 | 282..763 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:18:50 Download gff for
BO13638.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294539..9294599 | 9..68 | 95 | -> | Plus |
arm_2R | 9294673..9294885 | 69..281 | 100 | -> | Plus |
arm_2R | 9294945..9295425 | 282..763 | 99 | | Plus |
BO13638.complete Sequence
805 bp assembled on 2006-10-11
GenBank Submission: FJ632877
> BO13638.complete
GAAGTTATCAGTCGACATGAAATCGTTTGGATTGATTGCACTGGCTATCT
GTGGCGTTATCTGCGTCGCTGCGGAACCACAACACACCTACGACGGTCGC
AATGGGCCGCATGTCTTCGGTTCACCGGGCAATCAGGTCTATATAAGGGG
CCAGAATGAAGGCACCTACAGCGTGCCGGGAGTGGGTGGCCAGTTCCAAA
ACGCTCCTCAACGGGGTGAGCATGTGTACACCGATGAGGCGGGCAACACG
TTTGTTAACCGAAAGAACGCTGGTGGACCAGCTTCCCACACCATCAGTGG
TCCCAATTTTTCCGCCAAAAATTTAGGGCCCAATGGAGCTAAGAGCGTGG
GAATCCCACAACGTGCCCGGCGCAGTCCGCAGTTTCACGTAGAGCGTCCC
GGTCGCACTGTTGACGTTGGAAACGGAGGATTCTACATTCAGCGTGGCCG
ACGCAGTCCACAGCTTCATGTGGCACGCCCAGATCGCACCGTAACCATTG
GTAATGGCGGCGTCTATATTCAACGCAGTCGACGCAGTCCACAGTTCCAT
GTGGAGCGACCAGATCGCACTGTTGATTTCGGTAACGGTGGCTTCTCCGC
TCAACGTTTCCGCCGTGGGATCAACGATGCCCGCGTCCAGGGTGAGAACT
TTGTGGCCCGCGACGATCAGGCAGGAATTTGGGACAATAATGTCTCCGTT
TGGAAGCGTCCGGACGGACGCACTGTCACAATCGATAGGAATGGTCATAC
CATCGTGTCCGGAAGGGGACGTCCCGCTCAGCACTACGCAAGCTTTCTAG
ACCAT
BO13638.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 774 | CG33470-PC | 1..771 | 17..787 | 3855 | 100 | Plus |
CG33470-RA | 774 | CG33470-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
IM10-RC | 774 | CG18279-PC | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-RC | 904 | CG33470-RC | 32..802 | 17..787 | 3855 | 100 | Plus |
CG33470-RA | 1159 | CG33470-RA | 32..802 | 17..787 | 3855 | 100 | Plus |
IM10-RC | 1160 | CG18279-RC | 33..803 | 17..787 | 3855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13407437..13407942 | 279..784 | 2530 | 100 | Plus |
2R | 25286936 | 2R | 13412164..13412669 | 279..784 | 2530 | 100 | Plus |
2R | 25286936 | 2R | 13407167..13407380 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 13411894..13412107 | 68..281 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 8934132..8934239 | 620..727 | 300 | 85.2 | Plus |
2R | 25286936 | 2R | 13407043..13407094 | 17..68 | 260 | 100 | Plus |
2R | 25286936 | 2R | 13411770..13411821 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:48 has no hits.
BO13638.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:49 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 1..774 | 17..790 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:51 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 29..820 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:57 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RC | 32..802 | 17..789 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:50 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33470-RA | 29..820 | 9..797 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:05 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
IM10-RC | 33..803 | 17..789 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:05 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13407168..13407380 | 69..281 | 100 | -> | Plus |
2R | 13407043..13407094 | 17..68 | 100 | -> | Plus |
2R | 13407440..13407948 | 282..789 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:57 Download gff for
BO13638.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9294548..9294599 | 17..68 | 100 | -> | Plus |
arm_2R | 9294673..9294885 | 69..281 | 100 | -> | Plus |
arm_2R | 9294945..9295453 | 282..789 | 99 | | Plus |
BO13638.pep Sequence
Translation from 16 to 805
> BO13638.pep
MKSFGLIALAICGVICVAAEPQHTYDGRNGPHVFGSPGNQVYIRGQNEGT
YSVPGVGGQFQNAPQRGEHVYTDEAGNTFVNRKNAGGPASHTISGPNFSA
KNLGPNGAKSVGIPQRARRSPQFHVERPGRTVDVGNGGFYIQRGRRSPQL
HVARPDRTVTIGNGGVYIQRSRRSPQFHVERPDRTVDFGNGGFSAQRFRR
GINDARVQGENFVARDDQAGIWDNNVSVWKRPDGRTVTIDRNGHTIVSGR
GRPAQHYASFLDH
BO13638.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33470-PC | 257 | CG33470-PC | 1..257 | 1..257 | 1388 | 100 | Plus |
CG33470-PA | 257 | CG33470-PA | 1..257 | 1..257 | 1388 | 100 | Plus |
IM10-PC | 257 | CG18279-PC | 1..257 | 1..257 | 1388 | 100 | Plus |
IM10-PA | 257 | CG18279-PA | 1..257 | 1..257 | 1388 | 100 | Plus |
CG13749-PB | 183 | CG13749-PB | 17..176 | 18..182 | 557 | 61.8 | Plus |