Clone Sequence Records
BO13639.3prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13639.3prime
ATGGTCTAGAAAGCTTGCACGGTACGACTTCTGGTAGCGAGCACGGGCAC
CTGGACCGCCGAACTTCTTGGGCTCGCAGCGACGCGGATCGCCGACCAGC
AGGGTTCTGTCGTACTGCACCAGAATGTCCTTGATCTCCTTCTTGGAGGC
CTCATCGACGTATTTCTGGTAGAAGGCAACGAGAGCCTTGGAAATGGCCT
GGCGGATGGCGTAGATCTGGGCTACATGACCACCACCGCTAACGCGCACG
CGGATGTCGACGCCGGCGAATTTCTCCTTGCCGAGCAACAGAAGGGGCTC
CTGCAGTTTGTATTGCAGGACCTTGGGTTCAATCTGCTCCAGAGGACGAC
CGTTCACCTTCAGGAGGCCGTTGCCACGCTTGCAGTAAGCGACGGCGGTG
GCGGTTTTCTTGCGTCCGAAGACCTGGACAGCCTGCACGGGTTCTCTGCG
CTTCTGCTGCATGTCGACTGATAACT
BO13639.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4046-PA | 447 | RpS16-RA | 1..444 | 462..19 | 2220 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS16-RB | 754 | CG4046-RB | 213..656 | 462..19 | 2220 | 100 | Minus |
RpS16-RA | 573 | CG4046-RA | 32..475 | 462..19 | 2220 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22607755..22607897 | 161..19 | 715 | 100 | Minus |
2R | 25286936 | 2R | 22606507..22606641 | 410..276 | 675 | 100 | Minus |
2R | 25286936 | 2R | 22606932..22607048 | 278..162 | 585 | 100 | Minus |
2R | 25286936 | 2R | 22606245..22606288 | 452..409 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:35:49 has no hits.
BO13639.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:58 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-PA | 1..447 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:52 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4046-PA | 1..447 | 15..462 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:45 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 26..484 | 8..469 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:11 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 26..484 | 8..469 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:11 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22607755..22607906 | 8..161 | 96 | | Minus |
2R | 22606245..22606288 | 409..452 | 100 | -> | Minus |
2R | 22606509..22606640 | 277..408 | 100 | -> | Minus |
2R | 22606934..22607048 | 162..276 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:45 Download gff for
BO13639.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18495260..18495411 | 8..161 | 96 | | Minus |
arm_2R | 18493750..18493793 | 409..452 | 100 | -> | Minus |
arm_2R | 18494014..18494145 | 277..408 | 100 | -> | Minus |
arm_2R | 18494439..18494553 | 162..276 | 100 | -> | Minus |
BO13639.5prime Sequence
476 bp (475 high quality bases) assembled on 2006-05-08
> BO13639.5prime
GAAGTTATCAGTCGACATGCAGCAGAAGCGCAGAGAACCCGTGCAGGCTG
TCCAGGTCTTCGGACGCAAGAAAACCGCCACCGCCGTCGCTTACTGCAAG
CGTGGCAACGGCCTCCTGAAGGTGAACGGTCGTCCTCTGGAGCAGATTGA
ACCCAAGGTCCTGCAATACAAACTGCAGGAGCCCCTTCTGTTGCTCGGCA
AGGAGAAATTCGCCGGCGTCGACATCCGCGTGCGCGTTAGCGGTGGTGGT
CATGTAGCCCAGATCTACGCCATCCGCCAGGCCATTTCCAAGGCTCTCGT
TGCCTTCTACCAGAAATACGTCGATGAGGCCTCCAAGAAGGAGATCAAGG
ACATTCTGGTGCAGTACGACAGAACCCTGCTGGTCGGCGATCCGCGTCGC
TGCGAGCCCAAGAAGTTCGGCGGTCCAGGTGCCCGTGCTCGCTACCAGAA
GTCGTACCGTGCAAGCTTTCTAGACC
BO13639.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4046-PA | 447 | RpS16-RA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS16-RB | 754 | CG4046-RB | 213..656 | 17..460 | 2220 | 100 | Plus |
RpS16-RA | 573 | CG4046-RA | 32..475 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22607755..22607897 | 318..460 | 715 | 100 | Plus |
2R | 25286936 | 2R | 22606507..22606641 | 69..203 | 675 | 100 | Plus |
2R | 25286936 | 2R | 22606932..22607048 | 201..317 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22606245..22606288 | 27..70 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:58:50 has no hits.
BO13639.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:59 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:54 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4046-PA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:45 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 26..484 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:10 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 26..484 | 10..471 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:10 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22606245..22606288 | 27..70 | 100 | -> | Plus |
2R | 22606509..22606640 | 71..202 | 100 | -> | Plus |
2R | 22606934..22607048 | 203..317 | 100 | -> | Plus |
2R | 22607755..22607906 | 318..471 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:45 Download gff for
BO13639.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18493750..18493793 | 27..70 | 100 | -> | Plus |
arm_2R | 18494014..18494145 | 71..202 | 100 | -> | Plus |
arm_2R | 18494439..18494553 | 203..317 | 100 | -> | Plus |
arm_2R | 18495260..18495411 | 318..471 | 96 | | Plus |
BO13639.complete Sequence
478 bp assembled on 2006-10-11
GenBank Submission: FJ632878
> BO13639.complete
GAAGTTATCAGTCGACATGCAGCAGAAGCGCAGAGAACCCGTGCAGGCTG
TCCAGGTCTTCGGACGCAAGAAAACCGCCACCGCCGTCGCTTACTGCAAG
CGTGGCAACGGCCTCCTGAAGGTGAACGGTCGTCCTCTGGAGCAGATTGA
ACCCAAGGTCCTGCAATACAAACTGCAGGAGCCCCTTCTGTTGCTCGGCA
AGGAGAAATTCGCCGGCGTCGACATCCGCGTGCGCGTTAGCGGTGGTGGT
CATGTAGCCCAGATCTACGCCATCCGCCAGGCCATTTCCAAGGCTCTCGT
TGCCTTCTACCAGAAATACGTCGATGAGGCCTCCAAGAAGGAGATCAAGG
ACATTCTGGTGCAGTACGACAGAACCCTGCTGGTCGGCGATCCGCGTCGC
TGCGAGCCCAAGAAGTTCGGCGGTCCAGGTGCCCGTGCTCGCTACCAGAA
GTCGTACCGTGCAAGCTTTCTAGACCAT
BO13639.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS16-RB | 447 | CG4046-PB | 1..444 | 17..460 | 2220 | 100 | Plus |
RpS16-RA | 447 | CG4046-PA | 1..444 | 17..460 | 2220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS16-RB | 754 | CG4046-RB | 213..656 | 17..460 | 2220 | 100 | Plus |
RpS16-RA | 573 | CG4046-RA | 32..475 | 17..460 | 2220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22607755..22607897 | 318..460 | 715 | 100 | Plus |
2R | 25286936 | 2R | 22606507..22606641 | 69..203 | 675 | 100 | Plus |
2R | 25286936 | 2R | 22606932..22607048 | 201..317 | 585 | 100 | Plus |
2R | 25286936 | 2R | 22606245..22606288 | 27..70 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 22:00:41 has no hits.
BO13639.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:34 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 1..447 | 17..464 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:46 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 32..490 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:43 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 32..475 | 17..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:34 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 32..490 | 10..471 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:28 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS16-RA | 32..475 | 17..462 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:28 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22606509..22606640 | 71..202 | 100 | -> | Plus |
2R | 22606934..22607048 | 203..317 | 100 | -> | Plus |
2R | 22607755..22607897 | 318..462 | 98 | | Plus |
2R | 22606245..22606288 | 27..70 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:43 Download gff for
BO13639.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18493750..18493793 | 27..70 | 100 | -> | Plus |
arm_2R | 18494014..18494145 | 71..202 | 100 | -> | Plus |
arm_2R | 18494439..18494553 | 203..317 | 100 | -> | Plus |
arm_2R | 18495260..18495402 | 318..462 | 98 | | Plus |
BO13639.pep Sequence
Translation from 16 to 478
> BO13639.pep
MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQ
YKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQK
YVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYRAS
FLDH
BO13639.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS16-PB | 148 | CG4046-PB | 1..148 | 1..148 | 754 | 100 | Plus |
RpS16-PA | 148 | CG4046-PA | 1..148 | 1..148 | 754 | 100 | Plus |