Clone BO13639 Report

Search the DGRC for BO13639

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptRpS16-RA
Protein status:BO13639.pep: validated full length
Sequenced Size:478

Clone Sequence Records

BO13639.3prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13639.3prime
ATGGTCTAGAAAGCTTGCACGGTACGACTTCTGGTAGCGAGCACGGGCAC
CTGGACCGCCGAACTTCTTGGGCTCGCAGCGACGCGGATCGCCGACCAGC
AGGGTTCTGTCGTACTGCACCAGAATGTCCTTGATCTCCTTCTTGGAGGC
CTCATCGACGTATTTCTGGTAGAAGGCAACGAGAGCCTTGGAAATGGCCT
GGCGGATGGCGTAGATCTGGGCTACATGACCACCACCGCTAACGCGCACG
CGGATGTCGACGCCGGCGAATTTCTCCTTGCCGAGCAACAGAAGGGGCTC
CTGCAGTTTGTATTGCAGGACCTTGGGTTCAATCTGCTCCAGAGGACGAC
CGTTCACCTTCAGGAGGCCGTTGCCACGCTTGCAGTAAGCGACGGCGGTG
GCGGTTTTCTTGCGTCCGAAGACCTGGACAGCCTGCACGGGTTCTCTGCG
CTTCTGCTGCATGTCGACTGATAACT

BO13639.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG4046-PA 447 RpS16-RA 1..444 462..19 2220 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
RpS16-RB 754 CG4046-RB 213..656 462..19 2220 100 Minus
RpS16-RA 573 CG4046-RA 32..475 462..19 2220 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22607755..22607897 161..19 715 100 Minus
2R 25286936 2R 22606507..22606641 410..276 675 100 Minus
2R 25286936 2R 22606932..22607048 278..162 585 100 Minus
2R 25286936 2R 22606245..22606288 452..409 220 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:35:49 has no hits.

BO13639.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:58 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-PA 1..447 15..462 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:52 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4046-PA 1..447 15..462 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:21:45 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 26..484 8..469 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:40:11 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 26..484 8..469 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:40:11 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22607755..22607906 8..161 96   Minus
2R 22606245..22606288 409..452 100 -> Minus
2R 22606509..22606640 277..408 100 -> Minus
2R 22606934..22607048 162..276 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:21:45 Download gff for BO13639.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18495260..18495411 8..161 96   Minus
arm_2R 18493750..18493793 409..452 100 -> Minus
arm_2R 18494014..18494145 277..408 100 -> Minus
arm_2R 18494439..18494553 162..276 100 -> Minus

BO13639.5prime Sequence

476 bp (475 high quality bases) assembled on 2006-05-08

> BO13639.5prime
GAAGTTATCAGTCGACATGCAGCAGAAGCGCAGAGAACCCGTGCAGGCTG
TCCAGGTCTTCGGACGCAAGAAAACCGCCACCGCCGTCGCTTACTGCAAG
CGTGGCAACGGCCTCCTGAAGGTGAACGGTCGTCCTCTGGAGCAGATTGA
ACCCAAGGTCCTGCAATACAAACTGCAGGAGCCCCTTCTGTTGCTCGGCA
AGGAGAAATTCGCCGGCGTCGACATCCGCGTGCGCGTTAGCGGTGGTGGT
CATGTAGCCCAGATCTACGCCATCCGCCAGGCCATTTCCAAGGCTCTCGT
TGCCTTCTACCAGAAATACGTCGATGAGGCCTCCAAGAAGGAGATCAAGG
ACATTCTGGTGCAGTACGACAGAACCCTGCTGGTCGGCGATCCGCGTCGC
TGCGAGCCCAAGAAGTTCGGCGGTCCAGGTGCCCGTGCTCGCTACCAGAA
GTCGTACCGTGCAAGCTTTCTAGACC

BO13639.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG4046-PA 447 RpS16-RA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:58:53
Subject Length Description Subject Range Query Range Score Percent Strand
RpS16-RB 754 CG4046-RB 213..656 17..460 2220 100 Plus
RpS16-RA 573 CG4046-RA 32..475 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:58:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22607755..22607897 318..460 715 100 Plus
2R 25286936 2R 22606507..22606641 69..203 675 100 Plus
2R 25286936 2R 22606932..22607048 201..317 585 100 Plus
2R 25286936 2R 22606245..22606288 27..70 220 100 Plus
Blast to na_te.dros performed on 2015-02-11 09:58:50 has no hits.

BO13639.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:08:59 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:54 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4046-PA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:09:45 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 26..484 10..471 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:14:10 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 26..484 10..471 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:14:10 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22606245..22606288 27..70 100 -> Plus
2R 22606509..22606640 71..202 100 -> Plus
2R 22606934..22607048 203..317 100 -> Plus
2R 22607755..22607906 318..471 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:09:45 Download gff for BO13639.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18493750..18493793 27..70 100 -> Plus
arm_2R 18494014..18494145 71..202 100 -> Plus
arm_2R 18494439..18494553 203..317 100 -> Plus
arm_2R 18495260..18495411 318..471 96   Plus

BO13639.complete Sequence

478 bp assembled on 2006-10-11

GenBank Submission: FJ632878

> BO13639.complete
GAAGTTATCAGTCGACATGCAGCAGAAGCGCAGAGAACCCGTGCAGGCTG
TCCAGGTCTTCGGACGCAAGAAAACCGCCACCGCCGTCGCTTACTGCAAG
CGTGGCAACGGCCTCCTGAAGGTGAACGGTCGTCCTCTGGAGCAGATTGA
ACCCAAGGTCCTGCAATACAAACTGCAGGAGCCCCTTCTGTTGCTCGGCA
AGGAGAAATTCGCCGGCGTCGACATCCGCGTGCGCGTTAGCGGTGGTGGT
CATGTAGCCCAGATCTACGCCATCCGCCAGGCCATTTCCAAGGCTCTCGT
TGCCTTCTACCAGAAATACGTCGATGAGGCCTCCAAGAAGGAGATCAAGG
ACATTCTGGTGCAGTACGACAGAACCCTGCTGGTCGGCGATCCGCGTCGC
TGCGAGCCCAAGAAGTTCGGCGGTCCAGGTGCCCGTGCTCGCTACCAGAA
GTCGTACCGTGCAAGCTTTCTAGACCAT

BO13639.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:00:42
Subject Length Description Subject Range Query Range Score Percent Strand
RpS16-RB 447 CG4046-PB 1..444 17..460 2220 100 Plus
RpS16-RA 447 CG4046-PA 1..444 17..460 2220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:00:43
Subject Length Description Subject Range Query Range Score Percent Strand
RpS16-RB 754 CG4046-RB 213..656 17..460 2220 100 Plus
RpS16-RA 573 CG4046-RA 32..475 17..460 2220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:00:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22607755..22607897 318..460 715 100 Plus
2R 25286936 2R 22606507..22606641 69..203 675 100 Plus
2R 25286936 2R 22606932..22607048 201..317 585 100 Plus
2R 25286936 2R 22606245..22606288 27..70 220 100 Plus
Blast to na_te.dros performed on 2014-11-26 22:00:41 has no hits.

BO13639.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:34 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 1..447 17..464 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:46 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 32..490 10..471 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:43:43 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 32..475 17..462 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:34 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 32..490 10..471 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:48:28 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
RpS16-RA 32..475 17..462 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:48:28 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22606509..22606640 71..202 100 -> Plus
2R 22606934..22607048 203..317 100 -> Plus
2R 22607755..22607897 318..462 98   Plus
2R 22606245..22606288 27..70 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:43:43 Download gff for BO13639.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18493750..18493793 27..70 100 -> Plus
arm_2R 18494014..18494145 71..202 100 -> Plus
arm_2R 18494439..18494553 203..317 100 -> Plus
arm_2R 18495260..18495402 318..462 98   Plus

BO13639.pep Sequence

Translation from 16 to 478

> BO13639.pep
MQQKRREPVQAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQ
YKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQK
YVDEASKKEIKDILVQYDRTLLVGDPRRCEPKKFGGPGARARYQKSYRAS
FLDH

BO13639.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:50
Subject Length Description Subject Range Query Range Score Percent Strand
RpS16-PB 148 CG4046-PB 1..148 1..148 754 100 Plus
RpS16-PA 148 CG4046-PA 1..148 1..148 754 100 Plus