Clone BO13640 Report

Search the DGRC for BO13640

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG3939-RA
Protein status:BO13640.pep: validated full length
Sequenced Size:439

Clone Sequence Records

BO13640.5prime Sequence

437 bp (436 high quality bases) assembled on 2006-05-08

> BO13640.5prime
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAAGCAAGCTTTCTAGACC

BO13640.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PA 408 CG3939-RA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:41:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..717 17..421 2025 100 Plus
CG3939-RA 931 CG3939-RA 497..901 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:41:30
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176193 161..421 1305 100 Plus
X 23542271 X 3175514..3175658 17..161 725 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:41:35 has no hits.

BO13640.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:01 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 17..425 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:56 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:28 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..904 17..425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:36 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..904 17..425 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:36 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 17..161 100 -> Plus
X 3175934..3176196 162..425 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:28 Download gff for BO13640.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 17..161 100 -> Plus
arm_X 3069967..3070229 162..425 99   Plus

BO13640.3prime Sequence

437 bp (436 high quality bases) assembled on 2006-05-08

> BO13640.3prime
ATGGTCTAGAAAGCTTGCTTGGGCGACAAAATTGGACTTCTTCGGATCGG
TCTCCTCGAAAAAGAGCTCCAGAAGACTCGACTTGAGCAGCTGATCCCCA
TCCAGGCGCTCCACGCCCTTCCAGCGTATAAGGGTCGGTATGCCTTCCAC
CGAGTATGGCGGCTTTCGGAACATGTTGTCCTTGCCTATCCAGGATTCCC
GGCTACCCACGTCCACCACCAGGATCATGCAATCCGCCGGCGCGTGGTTG
CGAAAGGCACTCATGATAGTTTCCTCGGCCGCCACGCAGTCCGGACACCA
GCTGCGTCCGTCCTTGTCTTTCTCGCCGTAGAAGTAGATGTAGATGGGGC
TGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATCTCCTTGAAGCCC
CGTGCCGGCACATATTCGGGCATGTCGACTGATAACT

BO13640.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PA 408 CG3939-RA 1..405 423..19 2025 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..717 423..19 2025 100 Minus
CG3939-RA 931 CG3939-RA 497..901 423..19 2025 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176193 279..19 1305 100 Minus
X 23542271 X 3175514..3175658 423..279 725 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:17:20 has no hits.

BO13640.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:00 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 15..423 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:55 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-PA 1..408 15..423 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:58 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..904 15..423 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:05 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..904 15..423 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:05 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 279..423 100 -> Minus
X 3175934..3176196 15..278 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:58 Download gff for BO13640.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 279..423 100 -> Minus
arm_X 3069967..3070229 15..278 99   Minus

BO13640.complete Sequence

439 bp assembled on 2006-10-11

GenBank Submission: FJ632879

> BO13640.complete
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAAGCAAGCTTTCTAGACCAT

BO13640.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 408 CG3939-PB 1..405 17..421 2025 100 Plus
CG3939-RA 408 CG3939-PA 1..405 17..421 2025 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-RB 747 CG3939-RB 313..717 17..421 2025 100 Plus
CG3939-RA 931 CG3939-RA 497..901 17..421 2025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:46
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 3175933..3176193 161..421 1305 100 Plus
X 23542271 X 3175514..3175658 17..161 725 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:42:47 has no hits.

BO13640.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:34 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 1..408 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:56 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 396..803 17..425 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:04 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..901 17..423 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:34 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 396..803 17..425 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:12 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
CG3939-RA 497..901 17..423 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:12 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
X 3175514..3175658 17..161 100 -> Plus
X 3175934..3176193 162..423 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:04 Download gff for BO13640.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 3069547..3069691 17..161 100 -> Plus
arm_X 3069967..3070226 162..423 99   Plus

BO13640.pep Sequence

Translation from 16 to 439

> BO13640.pep
MPEYVPARGFKEMENLIKLYENQRSPIYIYFYGEKDKDGRSWCPDCVAAE
ETIMSAFRNHAPADCMILVVDVGSRESWIGKDNMFRKPPYSVEGIPTLIR
WKGVERLDGDQLLKSSLLELFFEETDPKKSNFVAQASFLDH

BO13640.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG3939-PB 135 CG3939-PB 1..135 1..135 725 100 Plus
CG3939-PA 135 CG3939-PA 1..135 1..135 725 100 Plus
cl-PC 126 CG11024-PC 8..126 8..126 224 39.2 Plus
cl-PB 126 CG11024-PB 8..126 8..126 224 39.2 Plus
cl-PA 126 CG11024-PA 8..126 8..126 224 39.2 Plus