Clone Sequence Records
BO13640.5prime Sequence
437 bp (436 high quality bases) assembled on 2006-05-08
> BO13640.5prime
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAAGCAAGCTTTCTAGACC
BO13640.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PA | 408 | CG3939-RA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:41:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..717 | 17..421 | 2025 | 100 | Plus |
CG3939-RA | 931 | CG3939-RA | 497..901 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:41:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176193 | 161..421 | 1305 | 100 | Plus |
X | 23542271 | X | 3175514..3175658 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:41:35 has no hits.
BO13640.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:01 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:56 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:12:28 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..904 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:42:36 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..904 | 17..425 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:42:36 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 17..161 | 100 | -> | Plus |
X | 3175934..3176196 | 162..425 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:12:28 Download gff for
BO13640.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 17..161 | 100 | -> | Plus |
arm_X | 3069967..3070229 | 162..425 | 99 | | Plus |
BO13640.3prime Sequence
437 bp (436 high quality bases) assembled on 2006-05-08
> BO13640.3prime
ATGGTCTAGAAAGCTTGCTTGGGCGACAAAATTGGACTTCTTCGGATCGG
TCTCCTCGAAAAAGAGCTCCAGAAGACTCGACTTGAGCAGCTGATCCCCA
TCCAGGCGCTCCACGCCCTTCCAGCGTATAAGGGTCGGTATGCCTTCCAC
CGAGTATGGCGGCTTTCGGAACATGTTGTCCTTGCCTATCCAGGATTCCC
GGCTACCCACGTCCACCACCAGGATCATGCAATCCGCCGGCGCGTGGTTG
CGAAAGGCACTCATGATAGTTTCCTCGGCCGCCACGCAGTCCGGACACCA
GCTGCGTCCGTCCTTGTCTTTCTCGCCGTAGAAGTAGATGTAGATGGGGC
TGCGCTGGTTCTCGTACAGCTTGATCAGATTTTCCATCTCCTTGAAGCCC
CGTGCCGGCACATATTCGGGCATGTCGACTGATAACT
BO13640.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PA | 408 | CG3939-RA | 1..405 | 423..19 | 2025 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:17:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..717 | 423..19 | 2025 | 100 | Minus |
CG3939-RA | 931 | CG3939-RA | 497..901 | 423..19 | 2025 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176193 | 279..19 | 1305 | 100 | Minus |
X | 23542271 | X | 3175514..3175658 | 423..279 | 725 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:17:20 has no hits.
BO13640.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:00 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:55 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-PA | 1..408 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:42:58 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..904 | 15..423 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:04:05 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..904 | 15..423 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:04:05 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 279..423 | 100 | -> | Minus |
X | 3175934..3176196 | 15..278 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:42:58 Download gff for
BO13640.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 279..423 | 100 | -> | Minus |
arm_X | 3069967..3070229 | 15..278 | 99 | | Minus |
BO13640.complete Sequence
439 bp assembled on 2006-10-11
GenBank Submission: FJ632879
> BO13640.complete
GAAGTTATCAGTCGACATGCCCGAATATGTGCCGGCACGGGGCTTCAAGG
AGATGGAAAATCTGATCAAGCTGTACGAGAACCAGCGCAGCCCCATCTAC
ATCTACTTCTACGGCGAGAAAGACAAGGACGGACGCAGCTGGTGTCCGGA
CTGCGTGGCGGCCGAGGAAACTATCATGAGTGCCTTTCGCAACCACGCGC
CGGCGGATTGCATGATCCTGGTGGTGGACGTGGGTAGCCGGGAATCCTGG
ATAGGCAAGGACAACATGTTCCGAAAGCCGCCATACTCGGTGGAAGGCAT
ACCGACCCTTATACGCTGGAAGGGCGTGGAGCGCCTGGATGGGGATCAGC
TGCTCAAGTCGAGTCTTCTGGAGCTCTTTTTCGAGGAGACCGATCCGAAG
AAGTCCAATTTTGTCGCCCAAGCAAGCTTTCTAGACCAT
BO13640.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:42:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 408 | CG3939-PB | 1..405 | 17..421 | 2025 | 100 | Plus |
CG3939-RA | 408 | CG3939-PA | 1..405 | 17..421 | 2025 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:42:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-RB | 747 | CG3939-RB | 313..717 | 17..421 | 2025 | 100 | Plus |
CG3939-RA | 931 | CG3939-RA | 497..901 | 17..421 | 2025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:42:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 3175933..3176193 | 161..421 | 1305 | 100 | Plus |
X | 23542271 | X | 3175514..3175658 | 17..161 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:42:47 has no hits.
BO13640.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:19:34 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 1..408 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:37:56 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 396..803 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:04 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..901 | 17..423 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:19:34 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 396..803 | 17..425 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:12 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3939-RA | 497..901 | 17..423 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:12 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 3175514..3175658 | 17..161 | 100 | -> | Plus |
X | 3175934..3176193 | 162..423 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:04 Download gff for
BO13640.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 3069547..3069691 | 17..161 | 100 | -> | Plus |
arm_X | 3069967..3070226 | 162..423 | 99 | | Plus |
BO13640.pep Sequence
Translation from 16 to 439
> BO13640.pep
MPEYVPARGFKEMENLIKLYENQRSPIYIYFYGEKDKDGRSWCPDCVAAE
ETIMSAFRNHAPADCMILVVDVGSRESWIGKDNMFRKPPYSVEGIPTLIR
WKGVERLDGDQLLKSSLLELFFEETDPKKSNFVAQASFLDH
BO13640.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3939-PB | 135 | CG3939-PB | 1..135 | 1..135 | 725 | 100 | Plus |
CG3939-PA | 135 | CG3939-PA | 1..135 | 1..135 | 725 | 100 | Plus |
cl-PC | 126 | CG11024-PC | 8..126 | 8..126 | 224 | 39.2 | Plus |
cl-PB | 126 | CG11024-PB | 8..126 | 8..126 | 224 | 39.2 | Plus |
cl-PA | 126 | CG11024-PA | 8..126 | 8..126 | 224 | 39.2 | Plus |