Clone BO13641 Report

Search the DGRC for BO13641

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptTpnC41C-RA
Protein status:BO13641.pep: validated full length
Sequenced Size:496

Clone Sequence Records

BO13641.3prime Sequence

494 bp (493 high quality bases) assembled on 2006-05-08

> BO13641.3prime
ATGGTCTAGAAAGCTTGCGTCGTCGCCACCGGTCATTACTTCCATAAATT
CATCAAAATCAACAGTACCCGATCCATCGGAATCAATTTCCTCAATCATC
ATGTCCAGGTCGTCATTTGTCAATTTATCGTCTAGTTCGCGCAGGATTTC
ACGAAGAACACCAGTAGTTATATATCCATTTCCTTCTTTGTCGTAAAGGC
GGAAAGCTTCCTTCAATTCAGCCATCATAGCTTCAGCGTCCTCTTCCACA
AGGAAGCGGGCTGCCAGGGTGGTAAATTCTTCAAATTCGATTTGGCCCGA
ACCATCCTCATCGACTTCAGCGATAATGTCAGCAAGAGTTGCATCATCAA
GTTGATGACCCAACATGCTAAGTATCGTACCCACCATAGCTGTGTTGATA
TATCCATTTTTTTCAGGGTCAAAAGCATTAAATGCATTACGTAGTAATGC
AGTTTGCTCCTTAGTCAATTCATCGCTCATGTCGACTGATAACT

BO13641.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2981-PA 465 TpnC41C-RA 1..462 480..19 2310 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:47
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 1880 CG2981-RB 224..685 480..19 2310 100 Minus
TpnC41C-RA 821 CG2981-RA 224..685 480..19 2310 100 Minus
TpnC47D-RB 791 CG9073-RB 439..503 105..41 205 87.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 51..446 1980 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:05:43 has no hits.

BO13641.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:02 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2981-PA 1..465 15..480 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:58 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2981-PA 1..465 15..480 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:58 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 15..480 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:14 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 15..480 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:14 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 5066428..5066463 15..50 94 <- Plus
2R 5066528..5066923 51..446 100 <- Plus
2R 5066977..5067006 447..477 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:58 Download gff for BO13641.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953933..953968 15..50 94 <- Plus
arm_2R 954033..954428 51..446 100 <- Plus
arm_2R 954482..954511 447..477 96   Plus

BO13641.5prime Sequence

494 bp (493 high quality bases) assembled on 2006-05-08

> BO13641.5prime
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACGCAAGCTTTCTAGACC

BO13641.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2981-PA 465 TpnC41C-RA 1..462 17..478 2310 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 1880 CG2981-RB 224..685 17..478 2310 100 Plus
TpnC41C-RA 821 CG2981-RA 224..685 17..478 2310 100 Plus
TpnC47D-RB 791 CG9073-RB 439..503 392..456 205 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 446..51 1980 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:51:58 has no hits.

BO13641.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:03 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2981-PA 1..465 17..482 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:00 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2981-PA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:17 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 17..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:35 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 17..482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:35 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 5066428..5066463 447..482 94 <- Minus
2R 5066528..5066923 51..446 100 <- Minus
2R 5066977..5067006 20..50 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:17 Download gff for BO13641.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953933..953968 447..482 94 <- Minus
arm_2R 954033..954428 51..446 100 <- Minus
arm_2R 954482..954511 20..50 96   Minus

BO13641.complete Sequence

496 bp assembled on 2006-10-11

GenBank Submission: FJ632880

> BO13641.complete
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACGCAAGCTTTCTAGACCAT

BO13641.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:58
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 465 CG2981-PB 1..462 17..478 2310 100 Plus
TpnC41C-RA 465 CG2981-PA 1..462 17..478 2310 100 Plus
TpnC47D-RB 468 CG9073-PB 385..449 392..456 205 87.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-RB 1880 CG2981-RB 224..685 17..478 2310 100 Plus
TpnC41C-RA 821 CG2981-RA 224..685 17..478 2310 100 Plus
TpnC47D-RB 791 CG9073-RB 439..503 392..456 205 87.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 5066528..5066923 446..51 1980 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:03:57 has no hits.

BO13641.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:36 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 1..465 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:49 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 17..482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:27 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..685 17..480 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:36 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..688 17..482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:30 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
TpnC41C-RA 224..685 17..480 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:30 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
2R 5066430..5066463 447..480 94 <- Minus
2R 5066528..5066923 51..446 100 <- Minus
2R 5066977..5067007 17..50 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:27 Download gff for BO13641.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 953935..953968 447..480 94 <- Minus
arm_2R 954033..954428 51..446 100 <- Minus
arm_2R 954482..954512 17..50 91   Minus

BO13641.pep Sequence

Translation from 16 to 496

> BO13641.pep
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDDASFLDH

BO13641.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
TpnC41C-PB 154 CG2981-PB 1..154 1..154 778 100 Plus
TpnC41C-PA 154 CG2981-PA 1..154 1..154 778 100 Plus
TpnC47D-PB 155 CG9073-PB 4..154 1..151 498 64.2 Plus
TpnC47D-PA 155 CG9073-PA 4..154 1..151 498 64.2 Plus
TpnC73F-PC 155 CG7930-PC 4..154 1..151 494 63.6 Plus