Clone Sequence Records
BO13641.3prime Sequence
494 bp (493 high quality bases) assembled on 2006-05-08
> BO13641.3prime
ATGGTCTAGAAAGCTTGCGTCGTCGCCACCGGTCATTACTTCCATAAATT
CATCAAAATCAACAGTACCCGATCCATCGGAATCAATTTCCTCAATCATC
ATGTCCAGGTCGTCATTTGTCAATTTATCGTCTAGTTCGCGCAGGATTTC
ACGAAGAACACCAGTAGTTATATATCCATTTCCTTCTTTGTCGTAAAGGC
GGAAAGCTTCCTTCAATTCAGCCATCATAGCTTCAGCGTCCTCTTCCACA
AGGAAGCGGGCTGCCAGGGTGGTAAATTCTTCAAATTCGATTTGGCCCGA
ACCATCCTCATCGACTTCAGCGATAATGTCAGCAAGAGTTGCATCATCAA
GTTGATGACCCAACATGCTAAGTATCGTACCCACCATAGCTGTGTTGATA
TATCCATTTTTTTCAGGGTCAAAAGCATTAAATGCATTACGTAGTAATGC
AGTTTGCTCCTTAGTCAATTCATCGCTCATGTCGACTGATAACT
BO13641.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2981-PA | 465 | TpnC41C-RA | 1..462 | 480..19 | 2310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:05:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 1880 | CG2981-RB | 224..685 | 480..19 | 2310 | 100 | Minus |
TpnC41C-RA | 821 | CG2981-RA | 224..685 | 480..19 | 2310 | 100 | Minus |
TpnC47D-RB | 791 | CG9073-RB | 439..503 | 105..41 | 205 | 87.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:05:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5066528..5066923 | 51..446 | 1980 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:05:43 has no hits.
BO13641.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:02 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2981-PA | 1..465 | 15..480 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:56:58 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2981-PA | 1..465 | 15..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:20:58 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 15..480 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:06:14 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 15..480 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:06:14 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5066428..5066463 | 15..50 | 94 | <- | Plus |
2R | 5066528..5066923 | 51..446 | 100 | <- | Plus |
2R | 5066977..5067006 | 447..477 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:20:58 Download gff for
BO13641.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 953933..953968 | 15..50 | 94 | <- | Plus |
arm_2R | 954033..954428 | 51..446 | 100 | <- | Plus |
arm_2R | 954482..954511 | 447..477 | 96 | | Plus |
BO13641.5prime Sequence
494 bp (493 high quality bases) assembled on 2006-05-08
> BO13641.5prime
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACGCAAGCTTTCTAGACC
BO13641.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2981-PA | 465 | TpnC41C-RA | 1..462 | 17..478 | 2310 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 1880 | CG2981-RB | 224..685 | 17..478 | 2310 | 100 | Plus |
TpnC41C-RA | 821 | CG2981-RA | 224..685 | 17..478 | 2310 | 100 | Plus |
TpnC47D-RB | 791 | CG9073-RB | 439..503 | 392..456 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5066528..5066923 | 446..51 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:51:58 has no hits.
BO13641.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:03 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2981-PA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:00 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2981-PA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:17 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:35 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 17..482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:35 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5066428..5066463 | 447..482 | 94 | <- | Minus |
2R | 5066528..5066923 | 51..446 | 100 | <- | Minus |
2R | 5066977..5067006 | 20..50 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:17 Download gff for
BO13641.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 953933..953968 | 447..482 | 94 | <- | Minus |
arm_2R | 954033..954428 | 51..446 | 100 | <- | Minus |
arm_2R | 954482..954511 | 20..50 | 96 | | Minus |
BO13641.complete Sequence
496 bp assembled on 2006-10-11
GenBank Submission: FJ632880
> BO13641.complete
GAAGTTATCAGTCGACATGAGCGATGAATTGACTAAGGAGCAAACTGCAT
TACTACGTAATGCATTTAATGCTTTTGACCCTGAAAAAAATGGATATATC
AACACAGCTATGGTGGGTACGATACTTAGCATGTTGGGTCATCAACTTGA
TGATGCAACTCTTGCTGACATTATCGCTGAAGTCGATGAGGATGGTTCGG
GCCAAATCGAATTTGAAGAATTTACCACCCTGGCAGCCCGCTTCCTTGTG
GAAGAGGACGCTGAAGCTATGATGGCTGAATTGAAGGAAGCTTTCCGCCT
TTACGACAAAGAAGGAAATGGATATATAACTACTGGTGTTCTTCGTGAAA
TCCTGCGCGAACTAGACGATAAATTGACAAATGACGACCTGGACATGATG
ATTGAGGAAATTGATTCCGATGGATCGGGTACTGTTGATTTTGATGAATT
TATGGAAGTAATGACCGGTGGCGACGACGCAAGCTTTCTAGACCAT
BO13641.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:03:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 465 | CG2981-PB | 1..462 | 17..478 | 2310 | 100 | Plus |
TpnC41C-RA | 465 | CG2981-PA | 1..462 | 17..478 | 2310 | 100 | Plus |
TpnC47D-RB | 468 | CG9073-PB | 385..449 | 392..456 | 205 | 87.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-RB | 1880 | CG2981-RB | 224..685 | 17..478 | 2310 | 100 | Plus |
TpnC41C-RA | 821 | CG2981-RA | 224..685 | 17..478 | 2310 | 100 | Plus |
TpnC47D-RB | 791 | CG9073-RB | 439..503 | 392..456 | 205 | 87.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:03:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 5066528..5066923 | 446..51 | 1980 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:03:57 has no hits.
BO13641.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:07:36 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 1..465 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:23:49 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:27 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..685 | 17..480 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:07:36 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..688 | 17..482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:09:30 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TpnC41C-RA | 224..685 | 17..480 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:09:30 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 5066430..5066463 | 447..480 | 94 | <- | Minus |
2R | 5066528..5066923 | 51..446 | 100 | <- | Minus |
2R | 5066977..5067007 | 17..50 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:27 Download gff for
BO13641.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 953935..953968 | 447..480 | 94 | <- | Minus |
arm_2R | 954033..954428 | 51..446 | 100 | <- | Minus |
arm_2R | 954482..954512 | 17..50 | 91 | | Minus |
BO13641.pep Sequence
Translation from 16 to 496
> BO13641.pep
MSDELTKEQTALLRNAFNAFDPEKNGYINTAMVGTILSMLGHQLDDATLA
DIIAEVDEDGSGQIEFEEFTTLAARFLVEEDAEAMMAELKEAFRLYDKEG
NGYITTGVLREILRELDDKLTNDDLDMMIEEIDSDGSGTVDFDEFMEVMT
GGDDASFLDH
BO13641.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TpnC41C-PB | 154 | CG2981-PB | 1..154 | 1..154 | 778 | 100 | Plus |
TpnC41C-PA | 154 | CG2981-PA | 1..154 | 1..154 | 778 | 100 | Plus |
TpnC47D-PB | 155 | CG9073-PB | 4..154 | 1..151 | 498 | 64.2 | Plus |
TpnC47D-PA | 155 | CG9073-PA | 4..154 | 1..151 | 498 | 64.2 | Plus |
TpnC73F-PC | 155 | CG7930-PC | 4..154 | 1..151 | 494 | 63.6 | Plus |