Clone BO13643 Report

Search the DGRC for BO13643

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptPdf-RA
Protein status:BO13643.pep: validated full length
Sequenced Size:340

Clone Sequence Records

BO13643.5prime Sequence

338 bp (337 high quality bases) assembled on 2006-05-08

> BO13643.5prime
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGGCAAGCTTTCTAGACC

BO13643.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG6496-PA 309 Pdf-RA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:53
Subject Length Description Subject Range Query Range Score Percent Strand
Pdf-RA 680 CG6496-RA 79..384 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26455758..26456063 322..17 1530 100 Minus
Blast to na_te.dros performed on 2015-02-12 19:15:51 has no hits.

BO13643.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:05 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-PA 1..309 17..326 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:03 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6496-PA 1..309 17..326 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:14 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 8..327 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:48 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 8..327 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:48 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 26455754..26456071 8..327 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:14 Download gff for BO13643.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22281476..22281793 8..327 98   Minus

BO13643.3prime Sequence

338 bp (337 high quality bases) assembled on 2006-05-08

> BO13643.3prime
ATGGTCTAGAAAGCTTGCCTTGCCCGCATCGTTCATGTTCTTGGGCAGAC
TCAACAAGGAGTTGATTAGCTCCGAGTTGCGCTTCCTGATGGGCACGGAT
GGGCCCAAGGAGTTCTCGAGGATCAGCGGATAGCGACAGAGAGTGGCCAC
TTGGCCGGGACTGAACTGTCCCACGCCCACGTTGTTGAACCAGTCGAGGA
GATCCCGATTGTACTCCTTGCGCACATAGCGCTCCTCATCCGGCATGGCC
ATGGCGCCGCAGTATCCCCACTGGCAGCAAATGGCCAGAAGCACAAGGGC
GACAAGGTACGTGTAGCGAGCCATGTCGACTGATAACT

BO13643.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG6496-PA 309 Pdf-RA 1..306 324..19 1530 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pdf-RA 680 CG6496-RA 79..384 324..19 1530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26455758..26456063 19..324 1530 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:48:21 has no hits.

BO13643.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:04 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-PA 1..309 15..324 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:01 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6496-PA 1..309 15..324 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:28 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 14..333 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:50 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 14..333 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:50 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 26455754..26456071 14..333 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:28 Download gff for BO13643.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22281476..22281793 14..333 98   Plus

BO13643.complete Sequence

340 bp assembled on 2006-10-11

GenBank Submission: FJ632881

> BO13643.complete
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGGCAAGCTTTCTAGACCAT

BO13643.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:30
Subject Length Description Subject Range Query Range Score Percent Strand
Pdf-RA 309 CG6496-PA 1..306 17..322 1530 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Pdf-RA 680 CG6496-RA 79..384 17..322 1530 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26455758..26456063 322..17 1530 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:26:28 has no hits.

BO13643.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:23 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 1..309 17..326 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:16 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 8..327 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:37 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 79..384 17..324 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:23 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 71..388 8..327 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:53 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
Pdf-RA 79..384 17..324 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:53 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26455756..26456063 17..324 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:37 Download gff for BO13643.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 22281478..22281785 17..324 99   Minus

BO13643.pep Sequence

Translation from 16 to 340

> BO13643.pep
MARYTYLVALVLLAICCQWGYCGAMAMPDEERYVRKEYNRDLLDWFNNVG
VGQFSPGQVATLCRYPLILENSLGPSVPIRKRNSELINSLLSLPKNMNDA
GKASFLDH

BO13643.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
Pdf-PA 102 CG6496-PA 1..102 1..102 545 100 Plus