Clone Sequence Records
BO13643.5prime Sequence
338 bp (337 high quality bases) assembled on 2006-05-08
> BO13643.5prime
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGGCAAGCTTTCTAGACC
BO13643.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6496-PA | 309 | Pdf-RA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:15:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdf-RA | 680 | CG6496-RA | 79..384 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:15:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26455758..26456063 | 322..17 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:15:51 has no hits.
BO13643.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:05 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-PA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:03 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6496-PA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:16:14 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 8..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:50:48 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 8..327 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:50:48 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26455754..26456071 | 8..327 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:16:14 Download gff for
BO13643.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22281476..22281793 | 8..327 | 98 | | Minus |
BO13643.3prime Sequence
338 bp (337 high quality bases) assembled on 2006-05-08
> BO13643.3prime
ATGGTCTAGAAAGCTTGCCTTGCCCGCATCGTTCATGTTCTTGGGCAGAC
TCAACAAGGAGTTGATTAGCTCCGAGTTGCGCTTCCTGATGGGCACGGAT
GGGCCCAAGGAGTTCTCGAGGATCAGCGGATAGCGACAGAGAGTGGCCAC
TTGGCCGGGACTGAACTGTCCCACGCCCACGTTGTTGAACCAGTCGAGGA
GATCCCGATTGTACTCCTTGCGCACATAGCGCTCCTCATCCGGCATGGCC
ATGGCGCCGCAGTATCCCCACTGGCAGCAAATGGCCAGAAGCACAAGGGC
GACAAGGTACGTGTAGCGAGCCATGTCGACTGATAACT
BO13643.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6496-PA | 309 | Pdf-RA | 1..306 | 324..19 | 1530 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdf-RA | 680 | CG6496-RA | 79..384 | 324..19 | 1530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26455758..26456063 | 19..324 | 1530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:48:21 has no hits.
BO13643.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:04 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-PA | 1..309 | 15..324 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:01 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6496-PA | 1..309 | 15..324 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:28 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 14..333 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:31:50 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 14..333 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:31:50 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26455754..26456071 | 14..333 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:28 Download gff for
BO13643.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22281476..22281793 | 14..333 | 98 | | Plus |
BO13643.complete Sequence
340 bp assembled on 2006-10-11
GenBank Submission: FJ632881
> BO13643.complete
GAAGTTATCAGTCGACATGGCTCGCTACACGTACCTTGTCGCCCTTGTGC
TTCTGGCCATTTGCTGCCAGTGGGGATACTGCGGCGCCATGGCCATGCCG
GATGAGGAGCGCTATGTGCGCAAGGAGTACAATCGGGATCTCCTCGACTG
GTTCAACAACGTGGGCGTGGGACAGTTCAGTCCCGGCCAAGTGGCCACTC
TCTGTCGCTATCCGCTGATCCTCGAGAACTCCTTGGGCCCATCCGTGCCC
ATCAGGAAGCGCAACTCGGAGCTAATCAACTCCTTGTTGAGTCTGCCCAA
GAACATGAACGATGCGGGCAAGGCAAGCTTTCTAGACCAT
BO13643.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:26:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdf-RA | 309 | CG6496-PA | 1..306 | 17..322 | 1530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:26:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdf-RA | 680 | CG6496-RA | 79..384 | 17..322 | 1530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:26:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 26455758..26456063 | 322..17 | 1530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:26:28 has no hits.
BO13643.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:05:23 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 1..309 | 17..326 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:20:16 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 8..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:37 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 79..384 | 17..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:05:23 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 71..388 | 8..327 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:53 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pdf-RA | 79..384 | 17..324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:53 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 26455756..26456063 | 17..324 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:37 Download gff for
BO13643.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 22281478..22281785 | 17..324 | 99 | | Minus |
BO13643.pep Sequence
Translation from 16 to 340
> BO13643.pep
MARYTYLVALVLLAICCQWGYCGAMAMPDEERYVRKEYNRDLLDWFNNVG
VGQFSPGQVATLCRYPLILENSLGPSVPIRKRNSELINSLLSLPKNMNDA
GKASFLDH
BO13643.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:47:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pdf-PA | 102 | CG6496-PA | 1..102 | 1..102 | 545 | 100 | Plus |