Clone BO13644 Report

Search the DGRC for BO13644

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptRpS30-RA
Protein status:BO13644.pep: validated full length
Sequenced Size:430

Clone Sequence Records

BO13644.5prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-08

> BO13644.5prime
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACAGCAAGCTTTCTAGACC

BO13644.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15697-PA 399 RpS30-RA 1..396 17..412 1980 100 Plus
CG15697-PB 399 RpS30-RB 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..519 16..412 1985 100 Plus
RpS30-RB 507 CG15697-RB 32..428 16..412 1985 100 Plus
RpS30-RA 517 CG15697-RA 42..438 16..412 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851348 93..412 1600 100 Plus
3R 32079331 3R 20850865..20850943 16..94 395 100 Plus
Blast to na_te.dros performed on 2015-02-10 22:31:57 has no hits.

BO13644.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:07 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-PB 1..399 17..413 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:06 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15697-PB 1..399 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:54 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..444 7..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:36 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 37..438 7..412 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:36 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20850860..20850943 7..94 95 -> Plus
3R 20851031..20851348 95..412 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:54 Download gff for BO13644.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676582..16676665 7..94 95 -> Plus
arm_3R 16676753..16677070 95..412 100   Plus

BO13644.3prime Sequence

428 bp (427 high quality bases) assembled on 2006-05-08

> BO13644.3prime
ATGGTCTAGAAAGCTTGCTGTGGAGTTGGCGTTGGGGCCGCGACGACGGC
CGAAGCCCTGCACAAAGTTGACGAACCGGCGGTTGTACTGGATCCTGCGC
TTGGCGCGTCCGGTCTTCTTCTTCTTCTTCTCCTGCTTCTCCACCTTGGG
CGTCTGTCCCTTGACCTTGCCGGCACGGGCCAGAGAACCGTGCACCTTAC
CTCCCAGCATGGGAATGTTGAGGTCCAGCTCAAAGGAGCTCAGGGCGGTC
ACGGGAGTCTCGTTGGCCAGAGTGATGCCCTCGCAATCGAGGCTGAATTC
CTCGGCGTTGAATCCATGGATCTGGGCCAGTTGGTTCTTGACTCCGGCAA
TGGTGGCATCCTGGGAAACCTCCAGGGCCTCGATGGTCTCTAGTCCACGG
ACGAACAGCTGCATGTCGACTGATAACT

BO13644.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG15697-PA 399 RpS30-RA 1..396 414..19 1980 100 Minus
CG15697-PB 399 RpS30-RB 1..396 414..19 1980 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..519 415..19 1985 100 Minus
RpS30-RB 507 CG15697-RB 32..428 415..19 1985 100 Minus
RpS30-RA 517 CG15697-RA 42..438 415..19 1985 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851348 338..19 1600 100 Minus
3R 32079331 3R 20850865..20850943 415..337 395 100 Minus
Blast to na_te.dros performed on 2015-02-12 18:47:43 has no hits.

BO13644.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:06 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-PB 1..399 18..414 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:04 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15697-PB 1..399 18..414 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:24 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..444 19..424 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:44 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 37..438 19..424 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:44 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20850860..20850943 337..424 95 -> Minus
3R 20851031..20851348 19..336 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:24 Download gff for BO13644.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676582..16676665 337..424 95 -> Minus
arm_3R 16676753..16677070 19..336 100   Minus

BO13644.complete Sequence

430 bp assembled on 2006-10-11

GenBank Submission: FJ632882

> BO13644.complete
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACAGCAAGCTTTCTAGACCAT

BO13644.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 399 CG15697-PC 1..396 17..412 1980 100 Plus
RpS30-RB 399 CG15697-PB 1..396 17..412 1980 100 Plus
RpS30-RA 399 CG15697-PA 1..396 17..412 1980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-RC 598 CG15697-RC 123..519 16..412 1985 100 Plus
RpS30-RB 507 CG15697-RB 32..428 16..412 1985 100 Plus
RpS30-RA 517 CG15697-RA 42..438 16..412 1985 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20851029..20851348 93..412 1600 100 Plus
3R 32079331 3R 20850865..20850943 16..94 395 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:35:13 has no hits.

BO13644.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:35 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RB 1..399 17..413 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:34 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 85..486 7..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:49 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 49..444 17..414 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:36 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 85..486 7..412 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:19 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
RpS30-RA 43..438 17..414 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:19 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20850866..20850943 17..94 100 -> Plus
3R 20851031..20851348 95..414 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:49 Download gff for BO13644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16676588..16676665 17..94 100 -> Plus
arm_3R 16676753..16677070 95..414 99   Plus

BO13644.pep Sequence

Translation from 16 to 430

> BO13644.pep
MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLA
NETPVTALSSFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK
TGRAKRRIQYNRRFVNFVQGFGRRRGPNANSTASFLDH

BO13644.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:20
Subject Length Description Subject Range Query Range Score Percent Strand
RpS30-PC 132 CG15697-PC 1..132 1..132 668 100 Plus
RpS30-PB 132 CG15697-PB 1..132 1..132 668 100 Plus
RpS30-PA 132 CG15697-PA 1..132 1..132 668 100 Plus