Clone Sequence Records
BO13644.5prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-08
> BO13644.5prime
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACAGCAAGCTTTCTAGACC
BO13644.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15697-PA | 399 | RpS30-RA | 1..396 | 17..412 | 1980 | 100 | Plus |
CG15697-PB | 399 | RpS30-RB | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..519 | 16..412 | 1985 | 100 | Plus |
RpS30-RB | 507 | CG15697-RB | 32..428 | 16..412 | 1985 | 100 | Plus |
RpS30-RA | 517 | CG15697-RA | 42..438 | 16..412 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:31:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851348 | 93..412 | 1600 | 100 | Plus |
3R | 32079331 | 3R | 20850865..20850943 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 22:31:57 has no hits.
BO13644.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:07 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-PB | 1..399 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:06 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15697-PB | 1..399 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:58:54 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..444 | 7..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:36 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 37..438 | 7..412 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:36 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20850860..20850943 | 7..94 | 95 | -> | Plus |
3R | 20851031..20851348 | 95..412 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:58:54 Download gff for
BO13644.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676582..16676665 | 7..94 | 95 | -> | Plus |
arm_3R | 16676753..16677070 | 95..412 | 100 | | Plus |
BO13644.3prime Sequence
428 bp (427 high quality bases) assembled on 2006-05-08
> BO13644.3prime
ATGGTCTAGAAAGCTTGCTGTGGAGTTGGCGTTGGGGCCGCGACGACGGC
CGAAGCCCTGCACAAAGTTGACGAACCGGCGGTTGTACTGGATCCTGCGC
TTGGCGCGTCCGGTCTTCTTCTTCTTCTTCTCCTGCTTCTCCACCTTGGG
CGTCTGTCCCTTGACCTTGCCGGCACGGGCCAGAGAACCGTGCACCTTAC
CTCCCAGCATGGGAATGTTGAGGTCCAGCTCAAAGGAGCTCAGGGCGGTC
ACGGGAGTCTCGTTGGCCAGAGTGATGCCCTCGCAATCGAGGCTGAATTC
CTCGGCGTTGAATCCATGGATCTGGGCCAGTTGGTTCTTGACTCCGGCAA
TGGTGGCATCCTGGGAAACCTCCAGGGCCTCGATGGTCTCTAGTCCACGG
ACGAACAGCTGCATGTCGACTGATAACT
BO13644.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15697-PA | 399 | RpS30-RA | 1..396 | 414..19 | 1980 | 100 | Minus |
CG15697-PB | 399 | RpS30-RB | 1..396 | 414..19 | 1980 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..519 | 415..19 | 1985 | 100 | Minus |
RpS30-RB | 507 | CG15697-RB | 32..428 | 415..19 | 1985 | 100 | Minus |
RpS30-RA | 517 | CG15697-RA | 42..438 | 415..19 | 1985 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:47:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851348 | 338..19 | 1600 | 100 | Minus |
3R | 32079331 | 3R | 20850865..20850943 | 415..337 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 18:47:43 has no hits.
BO13644.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:06 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-PB | 1..399 | 18..414 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:04 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15697-PB | 1..399 | 18..414 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:57:24 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..444 | 19..424 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:28:44 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 37..438 | 19..424 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:28:44 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20850860..20850943 | 337..424 | 95 | -> | Minus |
3R | 20851031..20851348 | 19..336 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:57:24 Download gff for
BO13644.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676582..16676665 | 337..424 | 95 | -> | Minus |
arm_3R | 16676753..16677070 | 19..336 | 100 | | Minus |
BO13644.complete Sequence
430 bp assembled on 2006-10-11
GenBank Submission: FJ632882
> BO13644.complete
GAAGTTATCAGTCGACATGCAGCTGTTCGTCCGTGGACTAGAGACCATCG
AGGCCCTGGAGGTTTCCCAGGATGCCACCATTGCCGGAGTCAAGAACCAA
CTGGCCCAGATCCATGGATTCAACGCCGAGGAATTCAGCCTCGATTGCGA
GGGCATCACTCTGGCCAACGAGACTCCCGTGACCGCCCTGAGCTCCTTTG
AGCTGGACCTCAACATTCCCATGCTGGGAGGTAAGGTGCACGGTTCTCTG
GCCCGTGCCGGCAAGGTCAAGGGACAGACGCCCAAGGTGGAGAAGCAGGA
GAAGAAGAAGAAGAAGACCGGACGCGCCAAGCGCAGGATCCAGTACAACC
GCCGGTTCGTCAACTTTGTGCAGGGCTTCGGCCGTCGTCGCGGCCCCAAC
GCCAACTCCACAGCAAGCTTTCTAGACCAT
BO13644.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 399 | CG15697-PC | 1..396 | 17..412 | 1980 | 100 | Plus |
RpS30-RB | 399 | CG15697-PB | 1..396 | 17..412 | 1980 | 100 | Plus |
RpS30-RA | 399 | CG15697-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:35:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-RC | 598 | CG15697-RC | 123..519 | 16..412 | 1985 | 100 | Plus |
RpS30-RB | 507 | CG15697-RB | 32..428 | 16..412 | 1985 | 100 | Plus |
RpS30-RA | 517 | CG15697-RA | 42..438 | 16..412 | 1985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20851029..20851348 | 93..412 | 1600 | 100 | Plus |
3R | 32079331 | 3R | 20850865..20850943 | 16..94 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:35:13 has no hits.
BO13644.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:06:35 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RB | 1..399 | 17..413 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:01:34 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 85..486 | 7..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:11:49 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 49..444 | 17..414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:06:36 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 85..486 | 7..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:24:19 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS30-RA | 43..438 | 17..414 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:24:19 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20850866..20850943 | 17..94 | 100 | -> | Plus |
3R | 20851031..20851348 | 95..414 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:11:49 Download gff for
BO13644.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16676588..16676665 | 17..94 | 100 | -> | Plus |
arm_3R | 16676753..16677070 | 95..414 | 99 | | Plus |
BO13644.pep Sequence
Translation from 16 to 430
> BO13644.pep
MQLFVRGLETIEALEVSQDATIAGVKNQLAQIHGFNAEEFSLDCEGITLA
NETPVTALSSFELDLNIPMLGGKVHGSLARAGKVKGQTPKVEKQEKKKKK
TGRAKRRIQYNRRFVNFVQGFGRRRGPNANSTASFLDH
BO13644.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:03:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS30-PC | 132 | CG15697-PC | 1..132 | 1..132 | 668 | 100 | Plus |
RpS30-PB | 132 | CG15697-PB | 1..132 | 1..132 | 668 | 100 | Plus |
RpS30-PA | 132 | CG15697-PA | 1..132 | 1..132 | 668 | 100 | Plus |