Clone Sequence Records
BO13646.3prime Sequence
778 bp (737 high quality bases) assembled on 2006-05-08
> BO13646.3prime
ATGGTCTAGAAAGCTTGCGTCGATCTTGGTTGTTGGCATGGTGTACTCTG
CTGTAAGGGACGCCATTTCCCCTGCGTCATGCGGATGTCCATCGTCCACC
GCTTCCTGGTTGCTAAATCGGTGTCGCAATATCGCCTCCTCCTGCATGGC
ATAGTCACCTTGGGTTAATTGGTGATACTGGGCAGCCTCGCCCCTCGGCT
CCGGCATACTTCCCGATCCGGTCAGGCCGCTGCTGCTCCGATTCCGGCGT
CCGAACAGCACCACTGTGCCCTTACTCAGCAGCGGACAGAGCAGTGCTTG
GTGGCAGCACGCAAATATCCGGTAATTCGAGCCCTGGAACGGATCTGACA
TAGCCGCACAGAGCATGTGGTCCAGATTGATACCAGTAAAAATTGAGAGC
GGAGAGAGAAGGATGAAGTGATAAAACAGCATGAAGGCGGTACCTATATG
TGACCAGTGGAACTCGCTGAGGTCCTCGACAGTGTACGCTCCGCTTCGGA
TAATGTAAATCGGTATTATATAGAGCAGTGCATGCTGGATCCAATAGGTG
GCCTGCTCGAAGGGATATGTGCGGCCCTCCACCTCGGGGAAAAGAAACGC
CAGAAATGGGCCGTTGAGATTGCTCATCTGTATACGAAAGAGCGCTGTTG
TCGTCTTCGTCGGCTTGGCGGCCAAAAGATAAATCTGCAGGCATGACTGG
ACATGACATGGATTCAAGGCGAAAATCATTGACTGTCCGGAGAGTTTGAA
GCCCATCTCAATGCCAAAAATCATTGAC
BO13646.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PA | 999 | CG14591-RA | 237..996 | 778..19 | 3800 | 100 | Minus |
CG14591-PB | 999 | CG14591-RB | 237..996 | 778..19 | 3800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 405..1164 | 778..19 | 3800 | 100 | Minus |
CG14591-RC | 1627 | CG14591-RC | 392..1151 | 778..19 | 3800 | 100 | Minus |
CG14591-RB | 1771 | CG14591-RB | 536..1295 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:19:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6037033..6037404 | 19..390 | 1860 | 100 | Plus |
2R | 25286936 | 2R | 6037817..6038013 | 491..687 | 985 | 100 | Plus |
2R | 25286936 | 2R | 6037661..6037762 | 391..492 | 510 | 100 | Plus |
2R | 25286936 | 2R | 6038071..6038164 | 685..778 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:19:19 has no hits.
BO13646.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:10 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 237..999 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:10 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 237..999 | 18..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:37 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 536..1295 | 19..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:26 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 536..1295 | 19..778 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:26 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037818..6038010 | 492..684 | 100 | <- | Plus |
2R | 6038071..6038164 | 685..778 | 100 | | Plus |
2R | 6037033..6037404 | 19..390 | 100 | <- | Plus |
2R | 6037661..6037761 | 391..491 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:37 Download gff for
BO13646.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1924538..1924909 | 19..390 | 100 | <- | Plus |
arm_2R | 1925166..1925266 | 391..491 | 100 | <- | Plus |
arm_2R | 1925323..1925515 | 492..684 | 100 | <- | Plus |
arm_2R | 1925576..1925669 | 685..778 | 100 | | Plus |
BO13646.5prime Sequence
786 bp (757 high quality bases) assembled on 2006-05-08
> BO13646.5prime
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGC
TCGAATTACCGGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCT
GCTGAGTAAGGGCACAGTGGTGCTGTTCGGACGCCG
BO13646.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PA | 999 | CG14591-RA | 1..770 | 17..786 | 3850 | 100 | Plus |
CG14591-PB | 999 | CG14591-RB | 1..770 | 17..786 | 3850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:44:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 169..938 | 17..786 | 3850 | 100 | Plus |
CG14591-RC | 1627 | CG14591-RC | 156..925 | 17..786 | 3850 | 100 | Plus |
CG14591-RB | 1771 | CG14591-RB | 300..1069 | 17..786 | 3850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:44:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6038071..6038400 | 346..17 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 6037817..6038013 | 540..344 | 985 | 100 | Minus |
2R | 25286936 | 2R | 6037259..6037404 | 786..641 | 730 | 100 | Minus |
2R | 25286936 | 2R | 6037661..6037762 | 640..539 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:44:10 has no hits.
BO13646.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:11 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:11 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-PB | 1..770 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:47:35 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1069 | 17..786 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:24:08 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1069 | 17..786 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:24:08 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037259..6037404 | 641..786 | 100 | <- | Minus |
2R | 6037661..6037761 | 540..640 | 100 | <- | Minus |
2R | 6037818..6038010 | 347..539 | 100 | <- | Minus |
2R | 6038071..6038400 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:47:35 Download gff for
BO13646.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1925166..1925266 | 540..640 | 100 | <- | Minus |
arm_2R | 1924764..1924909 | 641..786 | 100 | <- | Minus |
arm_2R | 1925323..1925515 | 347..539 | 100 | <- | Minus |
arm_2R | 1925576..1925905 | 17..346 | 100 | | Minus |
BO13646.complete Sequence
1030 bp assembled on 2006-10-11
GenBank Submission: FJ632884
> BO13646.complete
GAAGTTATCAGTCGACATGGGATGGGACTGGGCGGTCGGAGGTATATCCG
ATGAGATTCCGAGGACAACGGGACCAGAATGCATCAACTACATGACAGAT
CGACGTCGCTGGTTGGAGACGATACTACTGTCCGCCCTCTTCATCTTTAT
AATGCACCGCTCCTGGCAACGCCTAGCGCCGATTAAACTTCCGCCGCCGC
ACGAGATACAGAAGCCACACAGTCCTACAAGACTGTTTCTGCTAATAGCC
TTGTCAATGATTTTTGGCATTGAGATGGGCTTCAAACTCTCCGGACAGTC
AATGATTTTCGCCTTGAATCCATGTCATGTCCAGTCATGCCTGCAGATTT
ATCTTTTGGCCGCCAAGCCGACGAAGACGACAACAGCGCTCTTTCGTATA
CAGATGAGCAATCTCAACGGCCCATTTCTGGCGTTTCTTTTCCCCGAGGT
GGAGGGCCGCACATATCCCTTCGAGCAGGCCACCTATTGGATCCAGCATG
CACTGCTCTATATAATACCGATTTACATTATCCGAAGCGGAGCGTACACT
GTCGAGGACCTCAGCGAGTTCCACTGGTCACATATAGGTACCGCCTTCAT
GCTGTTTTATCACTTCATCCTTCTCTCTCCGCTCTCAATTTTTACTGGTA
TCAATCTGGACCACATGCTCTGTGCGGCTATGTCAGATCCGTTCCAGGGC
TCGAATTACCGGATATTTGCGTGCTGCCACCAAGCACTGCTCTGTCCGCT
GCTGAGTAAGGGCACAGTGGTGCTGTTCGGACGCCGGAATCGGAGCAGCA
GCGGCCTGACCGGATCGGGAAGTATGCCGGAGCCGAGGGGCGAGGCTGCC
CAGTATCACCAATTAACCCAAGGTGACTATGCCATGCAGGAGGAGGCGAT
ATTGCGACACCGATTTAGCAACCAGGAAGCGGTGGACGATGGACATCCGC
ATGACGCAGGGGAAATGGCGTCCCTTACAGCAGAGTACACCATGCCAACA
ACCAAGATCGACGCAAGCTTTCTAGACCAT
BO13646.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 999 | CG14591-PD | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG14591-RC | 999 | CG14591-PC | 1..996 | 17..1012 | 4980 | 100 | Plus |
CG14591-RB | 999 | CG14591-PB | 1..996 | 17..1012 | 4980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-RD | 1640 | CG14591-RD | 169..1164 | 17..1012 | 4980 | 100 | Plus |
CG14591-RC | 1627 | CG14591-RC | 156..1151 | 17..1012 | 4980 | 100 | Plus |
CG14591-RB | 1771 | CG14591-RB | 300..1295 | 17..1012 | 4980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6037033..6037404 | 1012..641 | 1860 | 100 | Minus |
2R | 25286936 | 2R | 6038071..6038400 | 346..17 | 1650 | 100 | Minus |
2R | 25286936 | 2R | 6037817..6038013 | 540..344 | 985 | 100 | Minus |
2R | 25286936 | 2R | 6037661..6037762 | 640..539 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:32:10 has no hits.
BO13646.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:29 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 1..999 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:09 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 301..1296 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:29 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1295 | 17..1014 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:30 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 301..1296 | 17..1012 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:34 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14591-RB | 300..1295 | 17..1014 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:34 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6037818..6038010 | 347..539 | 100 | <- | Minus |
2R | 6037661..6037761 | 540..640 | 100 | <- | Minus |
2R | 6037031..6037404 | 641..1014 | 99 | <- | Minus |
2R | 6038071..6038400 | 17..346 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:29 Download gff for
BO13646.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 1924536..1924909 | 641..1014 | 99 | <- | Minus |
arm_2R | 1925166..1925266 | 540..640 | 100 | <- | Minus |
arm_2R | 1925323..1925515 | 347..539 | 100 | <- | Minus |
arm_2R | 1925576..1925905 | 17..346 | 100 | | Minus |
BO13646.pep Sequence
Translation from 16 to 1030
> BO13646.pep
MGWDWAVGGISDEIPRTTGPECINYMTDRRRWLETILLSALFIFIMHRSW
QRLAPIKLPPPHEIQKPHSPTRLFLLIALSMIFGIEMGFKLSGQSMIFAL
NPCHVQSCLQIYLLAAKPTKTTTALFRIQMSNLNGPFLAFLFPEVEGRTY
PFEQATYWIQHALLYIIPIYIIRSGAYTVEDLSEFHWSHIGTAFMLFYHF
ILLSPLSIFTGINLDHMLCAAMSDPFQGSNYRIFACCHQALLCPLLSKGT
VVLFGRRNRSSSGLTGSGSMPEPRGEAAQYHQLTQGDYAMQEEAILRHRF
SNQEAVDDGHPHDAGEMASLTAEYTMPTTKIDASFLDH
BO13646.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14591-PD | 332 | CG14591-PD | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PC | 332 | CG14591-PC | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PB | 332 | CG14591-PB | 1..332 | 1..332 | 1773 | 100 | Plus |
CG14591-PA | 332 | CG14591-PA | 1..332 | 1..332 | 1773 | 100 | Plus |