Clone Sequence Records
BO13647.3prime Sequence
779 bp (778 high quality bases) assembled on 2006-05-08
> BO13647.3prime
ATGGTCTAGAAAGCTTGCTTTAAGGCCCCCGGTGACCTCGATGGCAGCCC
CATTGACGTATGACGATTGCGGGGAGGCCAAAAAGGCAATGACCTCGGCG
ATCTCCTCCGGCTGACCCAATCGGCCCAAGGGGCATCGTTGTACCACCTC
CTGCTTTACAGAATCGGGCACAACCGCTACCATGGGCGTGTCTATGTAGC
CTGGCAGGATGCAGTTCACACGGATGCCAAACTTTCCGAACTCCTTGGAG
GCCACCTCCGTGAAGGAGATCACGCCCGCCTTGGTGGCCGCATAGTTGGC
CTGGCCCACGTTGTTCATCTTGGCCACGATGCTTGAGAGGTTCACAATGG
TGCCGTTTTCCAGTTTCTGCTCGATCATGGCCTTGGCATAGGCCTGGGTA
ACCAGAAAGGTGCCCTTCAGATTGACCCCGTATACGTCATCGTAGTCCCG
TTCGGGCATCTTGAGCAGATAACCATCTCGGGTTATTCCAGCCGAATTGA
CCACAATAGTGGGTGCCTGCTGGAATTTCTTTAGGGCCTCGGCCACCGAG
AATTGAACACTCTGGGCAGAGGAAACGTCCACCTCCAGGGCGGCAGATCG
CTCAGAGCCCAATTCCTGTACGGTTTCTTGGGCCGCCTTTAGATTGCGGT
CAACGGCGATCACTTTGGCACCATCTCTGGCCAAAAGGCGGCAGGTGGCA
CGACCAATTCCTGATCCGGCACCTGTTACCAGGGCTACTTTTCCAGCTAG
TACTCCCACTGACATGTCGACTGATAACT
BO13647.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PA | 750 | CG3603-RA | 1..747 | 765..19 | 3735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:25:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 72..819 | 766..19 | 3740 | 100 | Minus |
CG3603-RA | 846 | CG3603-RA | 72..819 | 766..19 | 3740 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:24:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948216..2948921 | 724..19 | 3530 | 100 | Minus |
X | 23542271 | X | 2948105..2948151 | 766..720 | 235 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 10:25:02 has no hits.
BO13647.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:12 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:13 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 1..750 | 15..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:25:28 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..822 | 15..772 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:36:38 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..822 | 15..772 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:36:38 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948100..2948148 | 723..772 | 94 | -> | Minus |
X | 2948218..2948924 | 15..722 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:25:28 Download gff for
BO13647.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842133..2842181 | 723..772 | 94 | -> | Minus |
arm_X | 2842251..2842957 | 15..722 | 99 | | Minus |
BO13647.5prime Sequence
779 bp (763 high quality bases) assembled on 2006-05-08
> BO13647.5prime
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAAGCAAGCTTTCTAGACC
BO13647.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PA | 750 | CG3603-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 72..819 | 16..763 | 3740 | 100 | Plus |
CG3603-RA | 846 | CG3603-RA | 72..819 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948216..2948921 | 58..763 | 3530 | 100 | Plus |
X | 23542271 | X | 2948105..2948151 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:33:43 has no hits.
BO13647.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:13 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:15 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-PA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:03:42 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..822 | 10..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:24 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 67..822 | 10..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:24 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948100..2948148 | 10..59 | 94 | -> | Plus |
X | 2948218..2948924 | 60..767 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:03:42 Download gff for
BO13647.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842133..2842181 | 10..59 | 94 | -> | Plus |
arm_X | 2842251..2842957 | 60..767 | 99 | | Plus |
BO13647.complete Sequence
781 bp assembled on 2006-10-11
GenBank Submission: FJ632885
> BO13647.complete
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAAGCAAGCTTTCTAGACCAT
BO13647.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 750 | CG3603-PB | 1..747 | 17..763 | 3735 | 100 | Plus |
CG3603-RA | 750 | CG3603-PA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-RB | 1018 | CG3603-RB | 72..819 | 16..763 | 3740 | 100 | Plus |
CG3603-RA | 846 | CG3603-RA | 72..819 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2948216..2948921 | 58..763 | 3530 | 100 | Plus |
X | 23542271 | X | 2948105..2948151 | 16..62 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:38:17 has no hits.
BO13647.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:31 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 1..750 | 17..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:29 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 65..820 | 10..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:12 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 73..819 | 17..765 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:31 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 65..820 | 10..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:57 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3603-RA | 73..819 | 17..765 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:57 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2948106..2948148 | 17..59 | 100 | -> | Plus |
X | 2948218..2948921 | 60..765 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:12 Download gff for
BO13647.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2842139..2842181 | 17..59 | 100 | -> | Plus |
arm_X | 2842251..2842954 | 60..765 | 99 | | Plus |
BO13647.pep Sequence
Translation from 16 to 781
> BO13647.pep
MSVGVLAGKVALVTGAGSGIGRATCRLLARDGAKVIAVDRNLKAAQETVQ
ELGSERSAALEVDVSSAQSVQFSVAEALKKFQQAPTIVVNSAGITRDGYL
LKMPERDYDDVYGVNLKGTFLVTQAYAKAMIEQKLENGTIVNLSSIVAKM
NNVGQANYAATKAGVISFTEVASKEFGKFGIRVNCILPGYIDTPMVAVVP
DSVKQEVVQRCPLGRLGQPEEIAEVIAFLASPQSSYVNGAAIEVTGGLKA
SFLDH
BO13647.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3603-PB | 249 | CG3603-PB | 1..249 | 1..249 | 1224 | 100 | Plus |
CG3603-PA | 249 | CG3603-PA | 1..249 | 1..249 | 1224 | 100 | Plus |
CG3699-PA | 251 | CG3699-PA | 3..244 | 6..247 | 341 | 33.1 | Plus |
CG10672-PA | 317 | CG10672-PA | 69..315 | 6..250 | 314 | 32.9 | Plus |
scu-PA | 255 | CG7113-PA | 1..252 | 5..249 | 302 | 33.2 | Plus |