Clone BO13647 Report

Search the DGRC for BO13647

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG3603-RA
Protein status:BO13647.pep: validated full length
Sequenced Size:781

Clone Sequence Records

BO13647.3prime Sequence

779 bp (778 high quality bases) assembled on 2006-05-08

> BO13647.3prime
ATGGTCTAGAAAGCTTGCTTTAAGGCCCCCGGTGACCTCGATGGCAGCCC
CATTGACGTATGACGATTGCGGGGAGGCCAAAAAGGCAATGACCTCGGCG
ATCTCCTCCGGCTGACCCAATCGGCCCAAGGGGCATCGTTGTACCACCTC
CTGCTTTACAGAATCGGGCACAACCGCTACCATGGGCGTGTCTATGTAGC
CTGGCAGGATGCAGTTCACACGGATGCCAAACTTTCCGAACTCCTTGGAG
GCCACCTCCGTGAAGGAGATCACGCCCGCCTTGGTGGCCGCATAGTTGGC
CTGGCCCACGTTGTTCATCTTGGCCACGATGCTTGAGAGGTTCACAATGG
TGCCGTTTTCCAGTTTCTGCTCGATCATGGCCTTGGCATAGGCCTGGGTA
ACCAGAAAGGTGCCCTTCAGATTGACCCCGTATACGTCATCGTAGTCCCG
TTCGGGCATCTTGAGCAGATAACCATCTCGGGTTATTCCAGCCGAATTGA
CCACAATAGTGGGTGCCTGCTGGAATTTCTTTAGGGCCTCGGCCACCGAG
AATTGAACACTCTGGGCAGAGGAAACGTCCACCTCCAGGGCGGCAGATCG
CTCAGAGCCCAATTCCTGTACGGTTTCTTGGGCCGCCTTTAGATTGCGGT
CAACGGCGATCACTTTGGCACCATCTCTGGCCAAAAGGCGGCAGGTGGCA
CGACCAATTCCTGATCCGGCACCTGTTACCAGGGCTACTTTTCCAGCTAG
TACTCCCACTGACATGTCGACTGATAACT

BO13647.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PA 750 CG3603-RA 1..747 765..19 3735 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 10:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 72..819 766..19 3740 100 Minus
CG3603-RA 846 CG3603-RA 72..819 766..19 3740 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 10:24:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948216..2948921 724..19 3530 100 Minus
X 23542271 X 2948105..2948151 766..720 235 100 Minus
Blast to na_te.dros performed on 2015-02-04 10:25:02 has no hits.

BO13647.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:12 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:13 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 1..750 15..765 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 11:25:28 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..822 15..772 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 12:36:38 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..822 15..772 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 12:36:38 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2948100..2948148 723..772 94 -> Minus
X 2948218..2948924 15..722 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 11:25:28 Download gff for BO13647.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842133..2842181 723..772 94 -> Minus
arm_X 2842251..2842957 15..722 99   Minus

BO13647.5prime Sequence

779 bp (763 high quality bases) assembled on 2006-05-08

> BO13647.5prime
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAAGCAAGCTTTCTAGACC

BO13647.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PA 750 CG3603-RA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:33:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 72..819 16..763 3740 100 Plus
CG3603-RA 846 CG3603-RA 72..819 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:33:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948216..2948921 58..763 3530 100 Plus
X 23542271 X 2948105..2948151 16..62 235 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:33:43 has no hits.

BO13647.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:13 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:15 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-PA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:03:42 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..822 10..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:51:24 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 67..822 10..767 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:51:24 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2948100..2948148 10..59 94 -> Plus
X 2948218..2948924 60..767 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:03:42 Download gff for BO13647.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842133..2842181 10..59 94 -> Plus
arm_X 2842251..2842957 60..767 99   Plus

BO13647.complete Sequence

781 bp assembled on 2006-10-11

GenBank Submission: FJ632885

> BO13647.complete
GAAGTTATCAGTCGACATGTCAGTGGGAGTACTAGCTGGAAAAGTAGCCC
TGGTAACAGGTGCCGGATCAGGAATTGGTCGTGCCACCTGCCGCCTTTTG
GCCAGAGATGGTGCCAAAGTGATCGCCGTTGACCGCAATCTAAAGGCGGC
CCAAGAAACCGTACAGGAATTGGGCTCTGAGCGATCTGCCGCCCTGGAGG
TGGACGTTTCCTCTGCCCAGAGTGTTCAATTCTCGGTGGCCGAGGCCCTA
AAGAAATTCCAGCAGGCACCCACTATTGTGGTCAATTCGGCTGGAATAAC
CCGAGATGGTTATCTGCTCAAGATGCCCGAACGGGACTACGATGACGTAT
ACGGGGTCAATCTGAAGGGCACCTTTCTGGTTACCCAGGCCTATGCCAAG
GCCATGATCGAGCAGAAACTGGAAAACGGCACCATTGTGAACCTCTCAAG
CATCGTGGCCAAGATGAACAACGTGGGCCAGGCCAACTATGCGGCCACCA
AGGCGGGCGTGATCTCCTTCACGGAGGTGGCCTCCAAGGAGTTCGGAAAG
TTTGGCATCCGTGTGAACTGCATCCTGCCAGGCTACATAGACACGCCCAT
GGTAGCGGTTGTGCCCGATTCTGTAAAGCAGGAGGTGGTACAACGATGCC
CCTTGGGCCGATTGGGTCAGCCGGAGGAGATCGCCGAGGTCATTGCCTTT
TTGGCCTCCCCGCAATCGTCATACGTCAATGGGGCTGCCATCGAGGTCAC
CGGGGGCCTTAAAGCAAGCTTTCTAGACCAT

BO13647.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:38:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 750 CG3603-PB 1..747 17..763 3735 100 Plus
CG3603-RA 750 CG3603-PA 1..747 17..763 3735 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-RB 1018 CG3603-RB 72..819 16..763 3740 100 Plus
CG3603-RA 846 CG3603-RA 72..819 16..763 3740 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2948216..2948921 58..763 3530 100 Plus
X 23542271 X 2948105..2948151 16..62 235 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:38:17 has no hits.

BO13647.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:31 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 1..750 17..767 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:29 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 65..820 10..767 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:03:12 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 73..819 17..765 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:31 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 65..820 10..767 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:45:57 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
CG3603-RA 73..819 17..765 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:45:57 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
X 2948106..2948148 17..59 100 -> Plus
X 2948218..2948921 60..765 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:03:12 Download gff for BO13647.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2842139..2842181 17..59 100 -> Plus
arm_X 2842251..2842954 60..765 99   Plus

BO13647.pep Sequence

Translation from 16 to 781

> BO13647.pep
MSVGVLAGKVALVTGAGSGIGRATCRLLARDGAKVIAVDRNLKAAQETVQ
ELGSERSAALEVDVSSAQSVQFSVAEALKKFQQAPTIVVNSAGITRDGYL
LKMPERDYDDVYGVNLKGTFLVTQAYAKAMIEQKLENGTIVNLSSIVAKM
NNVGQANYAATKAGVISFTEVASKEFGKFGIRVNCILPGYIDTPMVAVVP
DSVKQEVVQRCPLGRLGQPEEIAEVIAFLASPQSSYVNGAAIEVTGGLKA
SFLDH

BO13647.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3603-PB 249 CG3603-PB 1..249 1..249 1224 100 Plus
CG3603-PA 249 CG3603-PA 1..249 1..249 1224 100 Plus
CG3699-PA 251 CG3699-PA 3..244 6..247 341 33.1 Plus
CG10672-PA 317 CG10672-PA 69..315 6..250 314 32.9 Plus
scu-PA 255 CG7113-PA 1..252 5..249 302 33.2 Plus