Clone BO13648 Report

Search the DGRC for BO13648

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG13565-RA
Protein status:BO13648.pep: validated full length
Sequenced Size:433

Clone Sequence Records

BO13648.3prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13648.3prime
ATGGTCTAGAAAGCTTGCGACGAGCTGGTTGAGGATGCTGAAGCTGGCGG
AGGCCTTGTCGATCTCGTCGAAGTTCCGCTTGAGCTTACTGCTCCAGGTG
TCCTTGTACAGGGGGTCCATCCTCACCAGGTAGGGCACCAGGTCCCGGTG
ATGGCCAGACCCGATCTTGCCGGCCGCGCACTGCTTCACCGAGTACTTCG
TCTTGAACTCCGACTGGCTGCACTCGTAGCAGACGACCGTTTGTCCATTG
GCAGCCGAAATCAATCTCACTATAAACGGTCCATCGTACTTCTTCGAGCC
AGCTTCACAAAGATATTTTCCATCCAGCAGTTCGTCGTTGGAAATATCCA
CACCGGGCGCTGCGTGAATGAAGTTCAGGAACACCGATACCACCGCCAGG
AGCACATATAGATTCATGTCGACTGATAACT

BO13648.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-PA 402 CG13565-RA 1..399 417..19 1995 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-RA 593 CG13565-RA 59..458 418..19 2000 100 Minus
CG13565-RC 611 CG13565-RC 59..174 418..303 580 100 Minus
CG13565-RB 1071 CG13565-RB 519..634 418..303 580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23947094..23947342 19..267 1245 100 Plus
2R 25286936 2R 23948488..23948558 348..418 355 100 Plus
2R 25286936 2R 23948352..23948398 303..349 235 100 Plus
2R 25286936 2R 23947616..23947655 266..305 200 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:48:40 has no hits.

BO13648.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:14 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:17 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-PA 1..402 18..417 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:52:05 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 59..458 19..418 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:23 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 59..458 19..418 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:23 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23947094..23947340 19..265 100 <- Plus
2R 23947616..23947652 266..302 100 <- Plus
2R 23948352..23948397 303..348 100 <- Plus
2R 23948489..23948558 349..418 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:52:05 Download gff for BO13648.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19834617..19834863 19..265 100 <- Plus
arm_2R 19835139..19835175 266..302 100 <- Plus
arm_2R 19835875..19835920 303..348 100 <- Plus
arm_2R 19836012..19836081 349..418 100   Plus

BO13648.5prime Sequence

431 bp (430 high quality bases) assembled on 2006-05-08

> BO13648.5prime
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCGCAAGCTTTCTAGACC

BO13648.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-PA 402 CG13565-RA 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-RA 593 CG13565-RA 59..458 16..415 2000 100 Plus
CG13565-RC 611 CG13565-RC 59..174 16..131 580 100 Plus
CG13565-RB 1071 CG13565-RB 519..634 16..131 580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23947094..23947342 415..167 1245 100 Minus
2R 25286936 2R 23948488..23948558 86..16 355 100 Minus
2R 25286936 2R 23948352..23948398 131..85 235 100 Minus
2R 25286936 2R 23947616..23947655 168..129 200 100 Minus
Blast to na_te.dros performed on 2015-02-10 22:21:21 has no hits.

BO13648.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:15 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:18 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-PA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:56:53 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 59..458 16..415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:59 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 59..458 16..415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:59 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23947094..23947340 169..415 100 <- Minus
2R 23947616..23947652 132..168 100 <- Minus
2R 23948352..23948397 86..131 100 <- Minus
2R 23948489..23948558 16..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:56:53 Download gff for BO13648.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19834617..19834863 169..415 100 <- Minus
arm_2R 19835139..19835175 132..168 100 <- Minus
arm_2R 19835875..19835920 86..131 100 <- Minus
arm_2R 19836012..19836081 16..85 100   Minus

BO13648.complete Sequence

433 bp assembled on 2006-10-11

GenBank Submission: FJ632886

> BO13648.complete
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCGCAAGCTTTCTAGACCAT

BO13648.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-RA 402 CG13565-PA 1..399 17..415 1995 100 Plus
CG13565-RC 384 CG13565-PC 1..115 17..131 575 100 Plus
CG13565-RB 384 CG13565-PB 1..115 17..131 575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-RA 593 CG13565-RA 59..458 16..415 2000 100 Plus
CG13565-RC 611 CG13565-RC 59..174 16..131 580 100 Plus
CG13565-RB 1071 CG13565-RB 519..634 16..131 580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:23
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23947094..23947342 415..167 1245 100 Minus
2R 25286936 2R 23948488..23948558 86..16 355 100 Minus
2R 25286936 2R 23948352..23948398 131..85 235 100 Minus
2R 25286936 2R 23947616..23947655 168..129 200 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:41:24 has no hits.

BO13648.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:32 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 1..402 17..416 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:30 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 57..456 16..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:12 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 60..458 17..417 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:32 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 57..456 16..415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:41 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
CG13565-RA 60..458 17..417 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:41 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23947092..23947340 169..417 99 <- Minus
2R 23947616..23947652 132..168 100 <- Minus
2R 23948352..23948397 86..131 100 <- Minus
2R 23948489..23948557 17..85 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:12 Download gff for BO13648.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19834615..19834863 169..417 99 <- Minus
arm_2R 19835139..19835175 132..168 100 <- Minus
arm_2R 19835875..19835920 86..131 100 <- Minus
arm_2R 19836012..19836080 17..85 100   Minus

BO13648.pep Sequence

Translation from 16 to 433

> BO13648.pep
MNLYVLLAVVSVFLNFIHAAPGVDISNDELLDGKYLCEAGSKKYDGPFIV
RLISAANGQTVVCYECSQSEFKTKYSVKQCAAGKIGSGHHRDLVPYLVRM
DPLYKDTWSSKLKRNFDEIDKASASFSILNQLVASFLDH

BO13648.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG13565-PA 133 CG13565-PA 1..133 1..133 691 100 Plus
CG13565-PC 127 CG13565-PC 1..38 1..38 194 100 Plus
CG13565-PB 127 CG13565-PB 1..38 1..38 194 100 Plus