Clone Sequence Records
BO13648.3prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13648.3prime
ATGGTCTAGAAAGCTTGCGACGAGCTGGTTGAGGATGCTGAAGCTGGCGG
AGGCCTTGTCGATCTCGTCGAAGTTCCGCTTGAGCTTACTGCTCCAGGTG
TCCTTGTACAGGGGGTCCATCCTCACCAGGTAGGGCACCAGGTCCCGGTG
ATGGCCAGACCCGATCTTGCCGGCCGCGCACTGCTTCACCGAGTACTTCG
TCTTGAACTCCGACTGGCTGCACTCGTAGCAGACGACCGTTTGTCCATTG
GCAGCCGAAATCAATCTCACTATAAACGGTCCATCGTACTTCTTCGAGCC
AGCTTCACAAAGATATTTTCCATCCAGCAGTTCGTCGTTGGAAATATCCA
CACCGGGCGCTGCGTGAATGAAGTTCAGGAACACCGATACCACCGCCAGG
AGCACATATAGATTCATGTCGACTGATAACT
BO13648.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 402 | CG13565-RA | 1..399 | 417..19 | 1995 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..458 | 418..19 | 2000 | 100 | Minus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 418..303 | 580 | 100 | Minus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 418..303 | 580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947094..23947342 | 19..267 | 1245 | 100 | Plus |
2R | 25286936 | 2R | 23948488..23948558 | 348..418 | 355 | 100 | Plus |
2R | 25286936 | 2R | 23948352..23948398 | 303..349 | 235 | 100 | Plus |
2R | 25286936 | 2R | 23947616..23947655 | 266..305 | 200 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:48:40 has no hits.
BO13648.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:14 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:17 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 18..417 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:52:05 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..458 | 19..418 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:23 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..458 | 19..418 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:23 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947094..23947340 | 19..265 | 100 | <- | Plus |
2R | 23947616..23947652 | 266..302 | 100 | <- | Plus |
2R | 23948352..23948397 | 303..348 | 100 | <- | Plus |
2R | 23948489..23948558 | 349..418 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:52:05 Download gff for
BO13648.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834617..19834863 | 19..265 | 100 | <- | Plus |
arm_2R | 19835139..19835175 | 266..302 | 100 | <- | Plus |
arm_2R | 19835875..19835920 | 303..348 | 100 | <- | Plus |
arm_2R | 19836012..19836081 | 349..418 | 100 | | Plus |
BO13648.5prime Sequence
431 bp (430 high quality bases) assembled on 2006-05-08
> BO13648.5prime
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCGCAAGCTTTCTAGACC
BO13648.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 402 | CG13565-RA | 1..399 | 17..415 | 1995 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..458 | 16..415 | 2000 | 100 | Plus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 16..131 | 580 | 100 | Plus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 16..131 | 580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 22:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947094..23947342 | 415..167 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 23948488..23948558 | 86..16 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23948352..23948398 | 131..85 | 235 | 100 | Minus |
2R | 25286936 | 2R | 23947616..23947655 | 168..129 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 22:21:21 has no hits.
BO13648.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:15 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:18 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-PA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 00:56:53 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..458 | 16..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:55:59 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 59..458 | 16..415 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:55:59 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947094..23947340 | 169..415 | 100 | <- | Minus |
2R | 23947616..23947652 | 132..168 | 100 | <- | Minus |
2R | 23948352..23948397 | 86..131 | 100 | <- | Minus |
2R | 23948489..23948558 | 16..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 00:56:53 Download gff for
BO13648.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834617..19834863 | 169..415 | 100 | <- | Minus |
arm_2R | 19835139..19835175 | 132..168 | 100 | <- | Minus |
arm_2R | 19835875..19835920 | 86..131 | 100 | <- | Minus |
arm_2R | 19836012..19836081 | 16..85 | 100 | | Minus |
BO13648.complete Sequence
433 bp assembled on 2006-10-11
GenBank Submission: FJ632886
> BO13648.complete
GAAGTTATCAGTCGACATGAATCTATATGTGCTCCTGGCGGTGGTATCGG
TGTTCCTGAACTTCATTCACGCAGCGCCCGGTGTGGATATTTCCAACGAC
GAACTGCTGGATGGAAAATATCTTTGTGAAGCTGGCTCGAAGAAGTACGA
TGGACCGTTTATAGTGAGATTGATTTCGGCTGCCAATGGACAAACGGTCG
TCTGCTACGAGTGCAGCCAGTCGGAGTTCAAGACGAAGTACTCGGTGAAG
CAGTGCGCGGCCGGCAAGATCGGGTCTGGCCATCACCGGGACCTGGTGCC
CTACCTGGTGAGGATGGACCCCCTGTACAAGGACACCTGGAGCAGTAAGC
TCAAGCGGAACTTCGACGAGATCGACAAGGCCTCCGCCAGCTTCAGCATC
CTCAACCAGCTCGTCGCAAGCTTTCTAGACCAT
BO13648.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:41:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 402 | CG13565-PA | 1..399 | 17..415 | 1995 | 100 | Plus |
CG13565-RC | 384 | CG13565-PC | 1..115 | 17..131 | 575 | 100 | Plus |
CG13565-RB | 384 | CG13565-PB | 1..115 | 17..131 | 575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:41:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-RA | 593 | CG13565-RA | 59..458 | 16..415 | 2000 | 100 | Plus |
CG13565-RC | 611 | CG13565-RC | 59..174 | 16..131 | 580 | 100 | Plus |
CG13565-RB | 1071 | CG13565-RB | 519..634 | 16..131 | 580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23947094..23947342 | 415..167 | 1245 | 100 | Minus |
2R | 25286936 | 2R | 23948488..23948558 | 86..16 | 355 | 100 | Minus |
2R | 25286936 | 2R | 23948352..23948398 | 131..85 | 235 | 100 | Minus |
2R | 25286936 | 2R | 23947616..23947655 | 168..129 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:41:24 has no hits.
BO13648.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:32 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 1..402 | 17..416 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:30 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 57..456 | 16..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:22:12 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 60..458 | 17..417 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:32 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 57..456 | 16..415 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:53:41 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG13565-RA | 60..458 | 17..417 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:53:41 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23947092..23947340 | 169..417 | 99 | <- | Minus |
2R | 23947616..23947652 | 132..168 | 100 | <- | Minus |
2R | 23948352..23948397 | 86..131 | 100 | <- | Minus |
2R | 23948489..23948557 | 17..85 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:22:12 Download gff for
BO13648.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19834615..19834863 | 169..417 | 99 | <- | Minus |
arm_2R | 19835139..19835175 | 132..168 | 100 | <- | Minus |
arm_2R | 19835875..19835920 | 86..131 | 100 | <- | Minus |
arm_2R | 19836012..19836080 | 17..85 | 100 | | Minus |
BO13648.pep Sequence
Translation from 16 to 433
> BO13648.pep
MNLYVLLAVVSVFLNFIHAAPGVDISNDELLDGKYLCEAGSKKYDGPFIV
RLISAANGQTVVCYECSQSEFKTKYSVKQCAAGKIGSGHHRDLVPYLVRM
DPLYKDTWSSKLKRNFDEIDKASASFSILNQLVASFLDH
BO13648.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG13565-PA | 133 | CG13565-PA | 1..133 | 1..133 | 691 | 100 | Plus |
CG13565-PC | 127 | CG13565-PC | 1..38 | 1..38 | 194 | 100 | Plus |
CG13565-PB | 127 | CG13565-PB | 1..38 | 1..38 | 194 | 100 | Plus |