Clone Sequence Records
BO13650.3prime Sequence
587 bp (586 high quality bases) assembled on 2006-05-08
> BO13650.3prime
ATGGTCTAGAAAGCTTGCAACGCGTCCTTTGCGAGCAGCTTTATCTTTGT
TCTTCCGCTGCTCCTTGGCACTTTTGTCCTTGGACTTTCCGGGCTTGCAG
TTCTTCTTGATGACCCGCGTGGCTTCGCAGGACGGATCACTGCTCGCTTT
CAACTTATCAGCTCTAGTCATTTGTCCGGTTGCACATTCCGACCAAGATC
CCTTTTCATATCGACAGGCTTTTTTACATTTCTTCTGAATGGTTCGCGTT
TGGTCGCATGCCGGGTCGCCCTTCTTTAATGTCAATGTTCTTGAACGCGT
ATTGGTTTTGGTGTCACACTCAGTCCACGGATTTTTGCCATATCGACAAG
ACAGACCGTCGCTCTTGGTGCCACGTTCATTTCTTATAAGCACTTCGTGA
TCGTCCTCCTCCCATACTTCTCCTTGTATGGCTGTAGTGGGCTGCGTCTG
CTCCGCCACAGGAAGGGCCAAAGGTGTTTCCTGGCCTTCTGTGGTGCCCA
GTACCGTGCTGCACATCACCCCCGACCAAGTCACTAGCGATGCCAGGAAA
AGCGCGTTGCAATTAATTCTCATGTCGACTGATAACT
BO13650.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1221-PA | 558 | miple-RA | 1..555 | 573..19 | 2775 | 100 | Minus |
CG1221-PB | 558 | miple-RB | 1..555 | 573..19 | 2775 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:23:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..671 | 574..19 | 2780 | 100 | Minus |
miple-RB | 1888 | CG1221-RB | 113..668 | 574..19 | 2780 | 100 | Minus |
miple-RA | 1904 | CG1221-RA | 129..684 | 574..19 | 2780 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 574..355 | 1100 | 100 | Minus |
3L | 28110227 | 3L | 268779..268960 | 220..39 | 910 | 100 | Minus |
3L | 28110227 | 3L | 268562..268700 | 357..219 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 04:23:08 has no hits.
BO13650.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:18 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-PA | 1..558 | 15..573 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:22 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1221-PB | 1..558 | 15..573 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:50 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..688 | 14..580 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:34 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..688 | 14..580 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:34 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268234..268459 | 357..580 | 99 | -> | Minus |
3L | 268563..268700 | 219..356 | 100 | -> | Minus |
3L | 268781..268960 | 39..218 | 100 | -> | Minus |
3L | 269097..269120 | 14..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:50 Download gff for
BO13650.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268234..268459 | 357..580 | 99 | -> | Minus |
arm_3L | 268563..268700 | 219..356 | 100 | -> | Minus |
arm_3L | 268781..268960 | 39..218 | 100 | -> | Minus |
arm_3L | 269097..269120 | 14..38 | 92 | | Minus |
BO13650.5prime Sequence
587 bp (586 high quality bases) assembled on 2006-05-08
> BO13650.5prime
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTCGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTGCAAGCTTTCTAGACC
BO13650.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1221-PA | 558 | miple-RA | 1..555 | 17..571 | 2750 | 99.8 | Plus |
CG1221-PB | 558 | miple-RB | 1..555 | 17..571 | 2750 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..671 | 16..571 | 2765 | 99.8 | Plus |
miple-RB | 1888 | CG1221-RB | 113..668 | 16..571 | 2765 | 99.8 | Plus |
miple-RA | 1904 | CG1221-RA | 129..684 | 16..571 | 2765 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 16..235 | 1085 | 99.5 | Plus |
3L | 28110227 | 3L | 268779..268960 | 370..551 | 910 | 100 | Plus |
3L | 28110227 | 3L | 268562..268700 | 233..371 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-04 03:00:20 has no hits.
BO13650.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:19 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-PA | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:24 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1221-PB | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:43 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..688 | 10..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:06 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..688 | 10..576 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:06 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268234..268459 | 10..233 | 98 | -> | Plus |
3L | 268563..268700 | 234..371 | 100 | -> | Plus |
3L | 268781..268960 | 372..551 | 100 | -> | Plus |
3L | 269097..269120 | 552..576 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:43 Download gff for
BO13650.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268234..268459 | 10..233 | 98 | -> | Plus |
arm_3L | 268563..268700 | 234..371 | 100 | -> | Plus |
arm_3L | 268781..268960 | 372..551 | 100 | -> | Plus |
arm_3L | 269097..269120 | 552..576 | 92 | | Plus |
BO13650.complete Sequence
589 bp assembled on 2006-10-11
GenBank Submission: FJ632887
> BO13650.complete
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTGCAAGCTTTCTAGACCAT
BO13650.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 558 | CG1221-PC | 1..555 | 17..571 | 2775 | 100 | Plus |
miple-RB | 558 | CG1221-PB | 1..555 | 17..571 | 2775 | 100 | Plus |
miple-RA | 558 | CG1221-PA | 1..555 | 17..571 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-RC | 1891 | CG1221-RC | 116..671 | 16..571 | 2780 | 100 | Plus |
miple-RB | 1888 | CG1221-RB | 113..668 | 16..571 | 2780 | 100 | Plus |
miple-RA | 1904 | CG1221-RA | 129..684 | 16..571 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 268242..268461 | 16..235 | 1100 | 100 | Plus |
3L | 28110227 | 3L | 268779..268960 | 370..551 | 910 | 100 | Plus |
3L | 28110227 | 3L | 268562..268700 | 233..371 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:22:00 has no hits.
BO13650.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:33 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RB | 1..558 | 17..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:32 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 121..688 | 10..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:52 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 130..684 | 17..573 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:34 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RB | 105..672 | 10..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:53 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
miple-RA | 130..684 | 17..573 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:53 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 268563..268700 | 234..371 | 100 | -> | Plus |
3L | 268781..268960 | 372..551 | 100 | -> | Plus |
3L | 268243..268459 | 17..233 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:52 Download gff for
BO13650.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 268243..268459 | 17..233 | 100 | -> | Plus |
arm_3L | 268563..268700 | 234..371 | 100 | -> | Plus |
arm_3L | 268781..268960 | 372..551 | 100 | -> | Plus |
BO13650.pep Sequence
Translation from 16 to 589
> BO13650.pep
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRVASFLDH
BO13650.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
miple-PC | 185 | CG1221-PC | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PB | 185 | CG1221-PB | 1..185 | 1..185 | 989 | 100 | Plus |
miple-PA | 185 | CG1221-PA | 1..185 | 1..185 | 989 | 100 | Plus |
miple2-PE | 281 | CG18321-PE | 152..281 | 69..187 | 317 | 47.7 | Plus |
miple2-PG | 279 | CG18321-PG | 152..274 | 69..180 | 310 | 49.6 | Plus |