Clone BO13650 Report

Search the DGRC for BO13650

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:50
Vector:pDNR-Dual
Associated Gene/Transcriptmiple-RA
Protein status:BO13650.pep: validated full length
Sequenced Size:589

Clone Sequence Records

BO13650.3prime Sequence

587 bp (586 high quality bases) assembled on 2006-05-08

> BO13650.3prime
ATGGTCTAGAAAGCTTGCAACGCGTCCTTTGCGAGCAGCTTTATCTTTGT
TCTTCCGCTGCTCCTTGGCACTTTTGTCCTTGGACTTTCCGGGCTTGCAG
TTCTTCTTGATGACCCGCGTGGCTTCGCAGGACGGATCACTGCTCGCTTT
CAACTTATCAGCTCTAGTCATTTGTCCGGTTGCACATTCCGACCAAGATC
CCTTTTCATATCGACAGGCTTTTTTACATTTCTTCTGAATGGTTCGCGTT
TGGTCGCATGCCGGGTCGCCCTTCTTTAATGTCAATGTTCTTGAACGCGT
ATTGGTTTTGGTGTCACACTCAGTCCACGGATTTTTGCCATATCGACAAG
ACAGACCGTCGCTCTTGGTGCCACGTTCATTTCTTATAAGCACTTCGTGA
TCGTCCTCCTCCCATACTTCTCCTTGTATGGCTGTAGTGGGCTGCGTCTG
CTCCGCCACAGGAAGGGCCAAAGGTGTTTCCTGGCCTTCTGTGGTGCCCA
GTACCGTGCTGCACATCACCCCCGACCAAGTCACTAGCGATGCCAGGAAA
AGCGCGTTGCAATTAATTCTCATGTCGACTGATAACT

BO13650.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1221-PA 558 miple-RA 1..555 573..19 2775 100 Minus
CG1221-PB 558 miple-RB 1..555 573..19 2775 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 04:23:11
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..671 574..19 2780 100 Minus
miple-RB 1888 CG1221-RB 113..668 574..19 2780 100 Minus
miple-RA 1904 CG1221-RA 129..684 574..19 2780 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 04:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 574..355 1100 100 Minus
3L 28110227 3L 268779..268960 220..39 910 100 Minus
3L 28110227 3L 268562..268700 357..219 695 100 Minus
Blast to na_te.dros performed on 2015-02-01 04:23:08 has no hits.

BO13650.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:18 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
miple-PA 1..558 15..573 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:22 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1221-PB 1..558 15..573 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:04:50 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..688 14..580 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 05:46:34 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..688 14..580 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 05:46:34 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 268234..268459 357..580 99 -> Minus
3L 268563..268700 219..356 100 -> Minus
3L 268781..268960 39..218 100 -> Minus
3L 269097..269120 14..38 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:04:50 Download gff for BO13650.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268234..268459 357..580 99 -> Minus
arm_3L 268563..268700 219..356 100 -> Minus
arm_3L 268781..268960 39..218 100 -> Minus
arm_3L 269097..269120 14..38 92   Minus

BO13650.5prime Sequence

587 bp (586 high quality bases) assembled on 2006-05-08

> BO13650.5prime
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTCGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTGCAAGCTTTCTAGACC

BO13650.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1221-PA 558 miple-RA 1..555 17..571 2750 99.8 Plus
CG1221-PB 558 miple-RB 1..555 17..571 2750 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..671 16..571 2765 99.8 Plus
miple-RB 1888 CG1221-RB 113..668 16..571 2765 99.8 Plus
miple-RA 1904 CG1221-RA 129..684 16..571 2765 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 16..235 1085 99.5 Plus
3L 28110227 3L 268779..268960 370..551 910 100 Plus
3L 28110227 3L 268562..268700 233..371 695 100 Plus
Blast to na_te.dros performed on 2015-02-04 03:00:20 has no hits.

BO13650.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:19 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
miple-PA 1..558 17..575 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:24 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1221-PB 1..558 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:43 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..688 10..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:06 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..688 10..576 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:06 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 268234..268459 10..233 98 -> Plus
3L 268563..268700 234..371 100 -> Plus
3L 268781..268960 372..551 100 -> Plus
3L 269097..269120 552..576 92   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:43 Download gff for BO13650.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268234..268459 10..233 98 -> Plus
arm_3L 268563..268700 234..371 100 -> Plus
arm_3L 268781..268960 372..551 100 -> Plus
arm_3L 269097..269120 552..576 92   Plus

BO13650.complete Sequence

589 bp assembled on 2006-10-11

GenBank Submission: FJ632887

> BO13650.complete
GAAGTTATCAGTCGACATGAGAATTAATTGCAACGCGCTTTTCCTGGCAT
CGCTAGTGACTTGGTCGGGGGTGATGTGCAGCACGGTACTGGGCACCACA
GAAGGCCAGGAAACACCTTTGGCCCTTCCTGTGGCGGAGCAGACGCAGCC
CACTACAGCCATACAAGGAGAAGTATGGGAGGAGGACGATCACGAAGTGC
TTATAAGAAATGAACGTGGCACCAAGAGCGACGGTCTGTCTTGTCGATAT
GGCAAAAATCCGTGGACTGAGTGTGACACCAAAACCAATACGCGTTCAAG
AACATTGACATTAAAGAAGGGCGACCCGGCATGCGACCAAACGCGAACCA
TTCAGAAGAAATGTAAAAAAGCCTGTCGATATGAAAAGGGATCTTGGTCG
GAATGTGCAACCGGACAAATGACTAGAGCTGATAAGTTGAAAGCGAGCAG
TGATCCGTCCTGCGAAGCCACGCGGGTCATCAAGAAGAACTGCAAGCCCG
GAAAGTCCAAGGACAAAAGTGCCAAGGAGCAGCGGAAGAACAAAGATAAA
GCTGCTCGCAAAGGACGCGTTGCAAGCTTTCTAGACCAT

BO13650.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 558 CG1221-PC 1..555 17..571 2775 100 Plus
miple-RB 558 CG1221-PB 1..555 17..571 2775 100 Plus
miple-RA 558 CG1221-PA 1..555 17..571 2775 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
miple-RC 1891 CG1221-RC 116..671 16..571 2780 100 Plus
miple-RB 1888 CG1221-RB 113..668 16..571 2780 100 Plus
miple-RA 1904 CG1221-RA 129..684 16..571 2780 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 268242..268461 16..235 1100 100 Plus
3L 28110227 3L 268779..268960 370..551 910 100 Plus
3L 28110227 3L 268562..268700 233..371 695 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:22:00 has no hits.

BO13650.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:33 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 1..558 17..575 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:32 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 121..688 10..576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:52 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 130..684 17..573 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:34 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RB 105..672 10..576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:53 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
miple-RA 130..684 17..573 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:53 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
3L 268563..268700 234..371 100 -> Plus
3L 268781..268960 372..551 100 -> Plus
3L 268243..268459 17..233 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:52 Download gff for BO13650.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 268243..268459 17..233 100 -> Plus
arm_3L 268563..268700 234..371 100 -> Plus
arm_3L 268781..268960 372..551 100 -> Plus

BO13650.pep Sequence

Translation from 16 to 589

> BO13650.pep
MRINCNALFLASLVTWSGVMCSTVLGTTEGQETPLALPVAEQTQPTTAIQ
GEVWEEDDHEVLIRNERGTKSDGLSCRYGKNPWTECDTKTNTRSRTLTLK
KGDPACDQTRTIQKKCKKACRYEKGSWSECATGQMTRADKLKASSDPSCE
ATRVIKKNCKPGKSKDKSAKEQRKNKDKAARKGRVASFLDH

BO13650.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
miple-PC 185 CG1221-PC 1..185 1..185 989 100 Plus
miple-PB 185 CG1221-PB 1..185 1..185 989 100 Plus
miple-PA 185 CG1221-PA 1..185 1..185 989 100 Plus
miple2-PE 281 CG18321-PE 152..281 69..187 317 47.7 Plus
miple2-PG 279 CG18321-PG 152..274 69..180 310 49.6 Plus