Clone BO13651 Report

Search the DGRC for BO13651

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS6-RA
Protein status:BO13651.pep: validated full length
Sequenced Size:475

Clone Sequence Records

BO13651.3prime Sequence

473 bp (472 high quality bases) assembled on 2006-05-08

> BO13651.3prime
ATGGTCTAGAAAGCTTGCTTTTTGGAAGGGATAGTAGTCCAGGCCGGAGT
TGTAGTTGAACTTCTTCTTTTGCTTCTTCTGGGCGGCCGCAATGATCTCC
TGCACATCCTTGCGATACGCGGGTGGCAGCATCTCCTCGTGCAGCGTGCA
GGGCTTCTGCTCGGGCTCCTCCACCTTGAAGATGTAGCGCCGTATGATGT
CGATGTCGCGGCCAAACTCCTCCTTCAAGTCTGCGATCTTAGTGGGCGCC
GTATCAAAGGCGATGGTGAAGTGGGTGCCTTCCCGGTGAACCACCCCGTG
TTCGCTGACTTTGTGGGGCAGGGCGCGGGATCCCAGGTTCTCCAGCTTCC
GGATAATGCCGCCCTTGTCCAGGATGGACTCGGCCGTTCGCCTAATCACG
GAAATCAGTTCGGGGCGAGGCAATTGGCGGAGCACCAGTGCTAGTTCGTA
AGAAGGCATGTCGACTGATAACT

BO13651.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG15016-PA 444 mRpS6-RA 1..441 459..19 2205 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:50
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..592 459..19 2205 100 Minus
mRpS6-RA 535 CG15016-RA 59..499 459..19 2205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365207 414..19 1980 100 Minus
3L 28110227 3L 4364701..4364745 459..415 225 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:27:47 has no hits.

BO13651.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:20 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:25 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15016-PA 1..444 15..459 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:18 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..502 15..465 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:49 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..502 15..465 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:49 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4364695..4364745 415..465 96 -> Minus
3L 4364812..4365210 15..414 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:18 Download gff for BO13651.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364695..4364745 415..465 96 -> Minus
arm_3L 4364812..4365210 15..414 99   Minus

BO13651.5prime Sequence

473 bp (472 high quality bases) assembled on 2006-05-08

> BO13651.5prime
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAAGCAAGCTTTCTAGACC

BO13651.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15016-PA 444 mRpS6-RA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..592 17..457 2205 100 Plus
mRpS6-RA 535 CG15016-RA 59..499 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365207 62..457 1980 100 Plus
3L 28110227 3L 4364701..4364745 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-13 08:32:23 has no hits.

BO13651.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:21 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:27 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15016-PA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:20 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..502 11..461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:28:25 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 53..502 11..461 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:28:25 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4364695..4364745 11..61 96 -> Plus
3L 4364812..4365210 62..461 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:20 Download gff for BO13651.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364695..4364745 11..61 96 -> Plus
arm_3L 4364812..4365210 62..461 99   Plus

BO13651.complete Sequence

475 bp assembled on 2006-10-11

GenBank Submission: FJ632888

> BO13651.complete
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAAGCAAGCTTTCTAGACCAT

BO13651.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 444 CG15016-PB 1..441 17..457 2205 100 Plus
mRpS6-RA 444 CG15016-PA 1..441 17..457 2205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:25
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-RB 628 CG15016-RB 152..592 17..457 2205 100 Plus
mRpS6-RA 535 CG15016-RA 59..499 17..457 2205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4364812..4365207 62..457 1980 100 Plus
3L 28110227 3L 4364701..4364745 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:25:23 has no hits.

BO13651.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:35 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 1..444 17..461 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:34 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 141..590 11..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:46 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 59..494 17..452 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:35 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 141..590 11..461 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:17 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS6-RA 59..494 17..452 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:17 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4364812..4365202 62..452 100   Plus
3L 4364701..4364745 17..61 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:46 Download gff for BO13651.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4364701..4364745 17..61 100 -> Plus
arm_3L 4364812..4365202 62..452 100   Plus

BO13651.pep Sequence

Translation from 16 to 475

> BO13651.pep
MPSYELALVLRQLPRPELISVIRRTAESILDKGGIIRKLENLGSRALPHK
VSEHGVVHREGTHFTIAFDTAPTKIADLKEEFGRDIDIIRRYIFKVEEPE
QKPCTLHEEMLPPAYRKDVQEIIAAAQKKQKKKFNYNSGLDYYPFQKASF
LDH

BO13651.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:44
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS6-PB 147 CG15016-PB 1..147 1..147 760 100 Plus
mRpS6-PA 147 CG15016-PA 1..147 1..147 760 100 Plus