Clone Sequence Records
BO13651.3prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-08
> BO13651.3prime
ATGGTCTAGAAAGCTTGCTTTTTGGAAGGGATAGTAGTCCAGGCCGGAGT
TGTAGTTGAACTTCTTCTTTTGCTTCTTCTGGGCGGCCGCAATGATCTCC
TGCACATCCTTGCGATACGCGGGTGGCAGCATCTCCTCGTGCAGCGTGCA
GGGCTTCTGCTCGGGCTCCTCCACCTTGAAGATGTAGCGCCGTATGATGT
CGATGTCGCGGCCAAACTCCTCCTTCAAGTCTGCGATCTTAGTGGGCGCC
GTATCAAAGGCGATGGTGAAGTGGGTGCCTTCCCGGTGAACCACCCCGTG
TTCGCTGACTTTGTGGGGCAGGGCGCGGGATCCCAGGTTCTCCAGCTTCC
GGATAATGCCGCCCTTGTCCAGGATGGACTCGGCCGTTCGCCTAATCACG
GAAATCAGTTCGGGGCGAGGCAATTGGCGGAGCACCAGTGCTAGTTCGTA
AGAAGGCATGTCGACTGATAACT
BO13651.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15016-PA | 444 | mRpS6-RA | 1..441 | 459..19 | 2205 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:27:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..592 | 459..19 | 2205 | 100 | Minus |
mRpS6-RA | 535 | CG15016-RA | 59..499 | 459..19 | 2205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:27:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365207 | 414..19 | 1980 | 100 | Minus |
3L | 28110227 | 3L | 4364701..4364745 | 459..415 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:27:47 has no hits.
BO13651.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:20 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:25 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15016-PA | 1..444 | 15..459 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:15:18 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..502 | 15..465 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:15:49 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..502 | 15..465 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:15:49 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364695..4364745 | 415..465 | 96 | -> | Minus |
3L | 4364812..4365210 | 15..414 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:15:18 Download gff for
BO13651.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364695..4364745 | 415..465 | 96 | -> | Minus |
arm_3L | 4364812..4365210 | 15..414 | 99 | | Minus |
BO13651.5prime Sequence
473 bp (472 high quality bases) assembled on 2006-05-08
> BO13651.5prime
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAAGCAAGCTTTCTAGACC
BO13651.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15016-PA | 444 | mRpS6-RA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..592 | 17..457 | 2205 | 100 | Plus |
mRpS6-RA | 535 | CG15016-RA | 59..499 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:32:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365207 | 62..457 | 1980 | 100 | Plus |
3L | 28110227 | 3L | 4364701..4364745 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:32:23 has no hits.
BO13651.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:21 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:27 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15016-PA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:37:20 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..502 | 11..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:28:25 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 53..502 | 11..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:28:25 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364695..4364745 | 11..61 | 96 | -> | Plus |
3L | 4364812..4365210 | 62..461 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:37:20 Download gff for
BO13651.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364695..4364745 | 11..61 | 96 | -> | Plus |
arm_3L | 4364812..4365210 | 62..461 | 99 | | Plus |
BO13651.complete Sequence
475 bp assembled on 2006-10-11
GenBank Submission: FJ632888
> BO13651.complete
GAAGTTATCAGTCGACATGCCTTCTTACGAACTAGCACTGGTGCTCCGCC
AATTGCCTCGCCCCGAACTGATTTCCGTGATTAGGCGAACGGCCGAGTCC
ATCCTGGACAAGGGCGGCATTATCCGGAAGCTGGAGAACCTGGGATCCCG
CGCCCTGCCCCACAAAGTCAGCGAACACGGGGTGGTTCACCGGGAAGGCA
CCCACTTCACCATCGCCTTTGATACGGCGCCCACTAAGATCGCAGACTTG
AAGGAGGAGTTTGGCCGCGACATCGACATCATACGGCGCTACATCTTCAA
GGTGGAGGAGCCCGAGCAGAAGCCCTGCACGCTGCACGAGGAGATGCTGC
CACCCGCGTATCGCAAGGATGTGCAGGAGATCATTGCGGCCGCCCAGAAG
AAGCAAAAGAAGAAGTTCAACTACAACTCCGGCCTGGACTACTATCCCTT
CCAAAAAGCAAGCTTTCTAGACCAT
BO13651.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 444 | CG15016-PB | 1..441 | 17..457 | 2205 | 100 | Plus |
mRpS6-RA | 444 | CG15016-PA | 1..441 | 17..457 | 2205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-RB | 628 | CG15016-RB | 152..592 | 17..457 | 2205 | 100 | Plus |
mRpS6-RA | 535 | CG15016-RA | 59..499 | 17..457 | 2205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4364812..4365207 | 62..457 | 1980 | 100 | Plus |
3L | 28110227 | 3L | 4364701..4364745 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:25:23 has no hits.
BO13651.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:35 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 1..444 | 17..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:34 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 141..590 | 11..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:46 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 59..494 | 17..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:35 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 141..590 | 11..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:17 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS6-RA | 59..494 | 17..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:17 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4364812..4365202 | 62..452 | 100 | | Plus |
3L | 4364701..4364745 | 17..61 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:46 Download gff for
BO13651.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4364701..4364745 | 17..61 | 100 | -> | Plus |
arm_3L | 4364812..4365202 | 62..452 | 100 | | Plus |
BO13651.pep Sequence
Translation from 16 to 475
> BO13651.pep
MPSYELALVLRQLPRPELISVIRRTAESILDKGGIIRKLENLGSRALPHK
VSEHGVVHREGTHFTIAFDTAPTKIADLKEEFGRDIDIIRRYIFKVEEPE
QKPCTLHEEMLPPAYRKDVQEIIAAAQKKQKKKFNYNSGLDYYPFQKASF
LDH
BO13651.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS6-PB | 147 | CG15016-PB | 1..147 | 1..147 | 760 | 100 | Plus |
mRpS6-PA | 147 | CG15016-PA | 1..147 | 1..147 | 760 | 100 | Plus |