Clone BO13654 Report

Search the DGRC for BO13654

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptmRpS31-RA
Protein status:BO13654.pep: validated full length
Sequenced Size:1162

Clone Sequence Records

BO13654.3prime Sequence

835 bp (741 high quality bases) assembled on 2006-05-08

> BO13654.3prime
ATGGTCTAGAAAGCTTGCAGCAGAAATACTTTTGCTTGGCTCCTTGCTAA
TCAGATCCCTCAGAATGTCCTTCTTGGCCTGGAAATAGTCACGGAACCAG
AAAATGTGATCCTTCTTCTCCTGGGCAGTCAAGTAGGGATTCTTGGACAA
GCCGACGCAGACGAGCTCCATGAAATGGCGAATAGGCCCCTTGCTAGGAC
ACCAATCCTCGAGATGTTGTTCCAGAAAAATGTGTTCCGAGAAGTCCACG
TTATGCTCGTCCTCCCAATCCTGCTCATTGTTGATGGGAAAGCGCCACAC
CTTCTTTTGATCCGTCCACAGGACCATTTGCTCGAAGTAGTTTGCCGGGG
GATGGGAAGCTTGTAAACTAAGCTCCCGCTCACTCAGCTGTGACCAGGTT
GAAAGGATGTCGTTGGAAATCGGCAGCTGGGTATCCTTGAAGATACCCAA
CGGTTCCCCGCCGTACAAATTGACACTGCCCGTAAAGGATTCAGCCTCTC
GTTTGGTTTGCCTCTGTGACCGCTGATAAGCCCCATCTCGATTCTGTGGC
TTGAATCTGGAAGCCAGCGAGCGGCGAACGTACTCGCCGCGGGTCTGCTC
CACCTGCTGCGGCTGCTGACGACGATCGATCTTCATGCCCACGATAATAT
CACTCAGATTGAGTTCCTTATCACCAGAAGGAGATCCCGAAACATCCGCC
GTCTGATTTTCTCCGGTCGCTGCTGAAAAGGACTCGCTTCCATGGCCAAG
GAGTTTTGGCCATAGCTCAGACTCTGTCTGCTTCTTGTCGCTCTCACTGG
TGCCCCAGCATGCTAGCAATGTTCTTGGCCGCAAT

BO13654.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5904-PA 1131 mRpS31-RA 342..1128 805..19 3835 99.4 Minus
CG5904-PA 1131 mRpS31-RA 315..344 833..804 150 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1277 CG5904-RA 412..1225 833..19 3990 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005912..16006547 654..19 3180 100 Minus
3L 28110227 3L 16005668..16005847 833..653 795 97.2 Minus
Blast to na_te.dros performed on 2015-02-03 07:05:19 has no hits.

BO13654.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:24 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5904-PA 313..1131 15..835 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:31 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5904-PA 313..1131 15..835 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:29 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 410..1233 10..835 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:53 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 410..1233 10..835 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:53 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 16005666..16005847 653..835 97 -> Minus
3L 16005914..16006555 10..652 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:29 Download gff for BO13654.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998766..15998947 653..835 97 -> Minus
arm_3L 15999014..15999655 10..652 99   Minus

BO13654.5prime Sequence

807 bp (744 high quality bases) assembled on 2006-05-08

> BO13654.5prime
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGC
TTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTATCAGCGGTCACAGA
GGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTAC
GGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAGCTGCCGATTTCCAA
CGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCGGGAGCTTATTTTAC
AAGCTTC

BO13654.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5904-PA 1131 mRpS31-RA 1..791 17..807 3930 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:37
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1277 CG5904-RA 98..888 17..807 3940 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005391..16005847 54..510 2285 100 Plus
3L 28110227 3L 16005912..16006210 509..807 1480 99.7 Plus
3L 28110227 3L 16005290..16005327 17..54 190 100 Plus
Blast to na_te.dros performed on 2015-02-12 10:51:35 has no hits.

BO13654.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:25 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5904-PA 1..791 17..807 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:32 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5904-PA 1..791 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:13 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 98..888 17..807 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:28 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 98..888 17..807 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:28 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 16005290..16005327 17..54 100 -> Plus
3L 16005392..16005847 55..510 100 -> Plus
3L 16005914..16006210 511..807 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:13 Download gff for BO13654.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998390..15998427 17..54 100 -> Plus
arm_3L 15998492..15998947 55..510 100 -> Plus
arm_3L 15999014..15999310 511..807 99   Plus

BO13654.complete Sequence

1162 bp assembled on 2006-10-11

GenBank Submission: FJ632889

> BO13654.complete
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGC
TTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTATCAGCGGTCACAGA
GGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTAC
GGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAGCTGCCGATTTCCAA
CGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCGGGAGCTTAGTTTAC
AAGCTTCCCATCCCCCGGCAAACTACTTCGAGCAAATGGTCCTGTGGACG
GATCAAAAGAAGGTGTGGCGCTTTCCCATCAACAATGAGCAGGATTGGGA
GGACGAGCATAACGTGGACTTCTCGGAACACATTTTTCTGGAACAACATC
TCGAGGATTGGTGTCCTAGCAAGGGGCCTATTCGCCATTTCATGGAGCTC
GTCTGCGTCGGCTTGTCCAAGAATCCCTACTTGACTGCCCAGGAGAAGAA
GGATCACATTTTCTGGTTCCGTGACTATTTCCAGGCCAAGAAGGACATTC
TGAGGGATCTGATTAGCAAGGAGCCAAGCAAAAGTATTTCTGCTGCAAGC
TTTCTAGACCAT

BO13654.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:18
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1131 CG5904-PA 1..1128 17..1144 5640 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:20
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-RA 1277 CG5904-RA 98..1225 17..1144 5640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16005912..16006547 509..1144 3180 100 Plus
3L 28110227 3L 16005391..16005847 54..510 2285 100 Plus
3L 28110227 3L 16005290..16005327 17..54 190 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:40:17 has no hits.

BO13654.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:37 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 1..1131 17..1148 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:37 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 94..1229 17..1153 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:02 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 103..1225 22..1146 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:38 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 94..1229 17..1153 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:27 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
mRpS31-RA 103..1225 22..1146 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:27 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16005295..16005327 22..54 100 -> Plus
3L 16005392..16005847 55..510 100 -> Plus
3L 16005914..16006547 511..1146 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:02 Download gff for BO13654.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15998395..15998427 22..54 100 -> Plus
arm_3L 15998492..15998947 55..510 100 -> Plus
arm_3L 15999014..15999647 511..1146 99   Plus

BO13654.pep Sequence

Translation from 16 to 1162

> BO13654.pep
MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK
KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA
KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA
DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP
QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST
WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV
DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW
FRDYFQAKKDILRDLISKEPSKSISAASFLDH

BO13654.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:38
Subject Length Description Subject Range Query Range Score Percent Strand
mRpS31-PA 376 CG5904-PA 1..376 1..376 1937 100 Plus