Clone Sequence Records
BO13654.3prime Sequence
835 bp (741 high quality bases) assembled on 2006-05-08
> BO13654.3prime
ATGGTCTAGAAAGCTTGCAGCAGAAATACTTTTGCTTGGCTCCTTGCTAA
TCAGATCCCTCAGAATGTCCTTCTTGGCCTGGAAATAGTCACGGAACCAG
AAAATGTGATCCTTCTTCTCCTGGGCAGTCAAGTAGGGATTCTTGGACAA
GCCGACGCAGACGAGCTCCATGAAATGGCGAATAGGCCCCTTGCTAGGAC
ACCAATCCTCGAGATGTTGTTCCAGAAAAATGTGTTCCGAGAAGTCCACG
TTATGCTCGTCCTCCCAATCCTGCTCATTGTTGATGGGAAAGCGCCACAC
CTTCTTTTGATCCGTCCACAGGACCATTTGCTCGAAGTAGTTTGCCGGGG
GATGGGAAGCTTGTAAACTAAGCTCCCGCTCACTCAGCTGTGACCAGGTT
GAAAGGATGTCGTTGGAAATCGGCAGCTGGGTATCCTTGAAGATACCCAA
CGGTTCCCCGCCGTACAAATTGACACTGCCCGTAAAGGATTCAGCCTCTC
GTTTGGTTTGCCTCTGTGACCGCTGATAAGCCCCATCTCGATTCTGTGGC
TTGAATCTGGAAGCCAGCGAGCGGCGAACGTACTCGCCGCGGGTCTGCTC
CACCTGCTGCGGCTGCTGACGACGATCGATCTTCATGCCCACGATAATAT
CACTCAGATTGAGTTCCTTATCACCAGAAGGAGATCCCGAAACATCCGCC
GTCTGATTTTCTCCGGTCGCTGCTGAAAAGGACTCGCTTCCATGGCCAAG
GAGTTTTGGCCATAGCTCAGACTCTGTCTGCTTCTTGTCGCTCTCACTGG
TGCCCCAGCATGCTAGCAATGTTCTTGGCCGCAAT
BO13654.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5904-PA | 1131 | mRpS31-RA | 342..1128 | 805..19 | 3835 | 99.4 | Minus |
CG5904-PA | 1131 | mRpS31-RA | 315..344 | 833..804 | 150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:05:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS31-RA | 1277 | CG5904-RA | 412..1225 | 833..19 | 3990 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16005912..16006547 | 654..19 | 3180 | 100 | Minus |
3L | 28110227 | 3L | 16005668..16005847 | 833..653 | 795 | 97.2 | Minus |
Blast to na_te.dros performed on 2015-02-03 07:05:19 has no hits.
BO13654.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:24 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5904-PA | 313..1131 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:31 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5904-PA | 313..1131 | 15..835 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:27:29 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 410..1233 | 10..835 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:42:53 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 410..1233 | 10..835 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:42:53 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16005666..16005847 | 653..835 | 97 | -> | Minus |
3L | 16005914..16006555 | 10..652 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:27:29 Download gff for
BO13654.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15998766..15998947 | 653..835 | 97 | -> | Minus |
arm_3L | 15999014..15999655 | 10..652 | 99 | | Minus |
BO13654.5prime Sequence
807 bp (744 high quality bases) assembled on 2006-05-08
> BO13654.5prime
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGC
TTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTATCAGCGGTCACAGA
GGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTAC
GGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAGCTGCCGATTTCCAA
CGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCGGGAGCTTATTTTAC
AAGCTTC
BO13654.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5904-PA | 1131 | mRpS31-RA | 1..791 | 17..807 | 3930 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:51:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS31-RA | 1277 | CG5904-RA | 98..888 | 17..807 | 3940 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16005391..16005847 | 54..510 | 2285 | 100 | Plus |
3L | 28110227 | 3L | 16005912..16006210 | 509..807 | 1480 | 99.7 | Plus |
3L | 28110227 | 3L | 16005290..16005327 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:51:35 has no hits.
BO13654.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:25 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5904-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:32 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5904-PA | 1..791 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:16:13 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 98..888 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:21:28 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 98..888 | 17..807 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:21:28 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16005290..16005327 | 17..54 | 100 | -> | Plus |
3L | 16005392..16005847 | 55..510 | 100 | -> | Plus |
3L | 16005914..16006210 | 511..807 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:16:13 Download gff for
BO13654.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15998390..15998427 | 17..54 | 100 | -> | Plus |
arm_3L | 15998492..15998947 | 55..510 | 100 | -> | Plus |
arm_3L | 15999014..15999310 | 511..807 | 99 | | Plus |
BO13654.complete Sequence
1162 bp assembled on 2006-10-11
GenBank Submission: FJ632889
> BO13654.complete
GAAGTTATCAGTCGACATGTTGGCCGTACGAAGTTCCCAGAGATTGGGCC
TACGTTCCCTGCTACCGTCTGCCTTCAAAAACGTGGGATTGGTCAACTAC
TCCTCTTCGCAGTCCAAAAACGACGATGGATACTCCTCTTCGGACGACGA
AAAGCCCACGAAGAAGAAGGAGGAACCTGTGGAAACGGCGGCCCAGCGGC
TGAACCGCCTGTTGGGCACCATGCAGGCCACGGATCAGCTCTCGGCATCG
GACTTTCCACGTCCTGGTGATGCCAACAGGAAGCGGAGGGAGGCCCAGAA
ACAGGAGGCAGCCGCCAAGAATGTTCTAACTGCGGCCAAGAACATTGCTA
GCATGCTGGGCACCAGTGAGAGCGACAAGAAGCAGACAGAGTCTGAGCTA
TTGGCCAAACTCCTTGGCCATGGAAGCGAGTCCTCTTCAGCAGCGACCGG
AGAAAATCAGACGGCGGATGTTTCGGGATCTCCTTCTGGTGATAAGGAAC
TCAATCTGAGTGATATTATCGTGGGCATGAAGATCGATCGTCGTCAGCAG
CCGCAGCAGGTGGAGCAGACCCGCGGCGAGTACGTTCGCCGCTCGCTGGC
TTCCAGATTCAAGCCACAGAATCGAGATGGGGCTTATCAGCGGTCACAGA
GGCAAACCAAACGAGAGGCTGAATCCTTTACGGGCAGTGTCAATTTGTAC
GGCGGGGAACCGTTGGGTATCTTCAAGGATACCCAGCTGCCGATTTCCAA
CGACATCCTTTCAACCTGGTCACAGCTGAGTGAGCGGGAGCTTAGTTTAC
AAGCTTCCCATCCCCCGGCAAACTACTTCGAGCAAATGGTCCTGTGGACG
GATCAAAAGAAGGTGTGGCGCTTTCCCATCAACAATGAGCAGGATTGGGA
GGACGAGCATAACGTGGACTTCTCGGAACACATTTTTCTGGAACAACATC
TCGAGGATTGGTGTCCTAGCAAGGGGCCTATTCGCCATTTCATGGAGCTC
GTCTGCGTCGGCTTGTCCAAGAATCCCTACTTGACTGCCCAGGAGAAGAA
GGATCACATTTTCTGGTTCCGTGACTATTTCCAGGCCAAGAAGGACATTC
TGAGGGATCTGATTAGCAAGGAGCCAAGCAAAAGTATTTCTGCTGCAAGC
TTTCTAGACCAT
BO13654.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:40:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS31-RA | 1131 | CG5904-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:40:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS31-RA | 1277 | CG5904-RA | 98..1225 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 16005912..16006547 | 509..1144 | 3180 | 100 | Plus |
3L | 28110227 | 3L | 16005391..16005847 | 54..510 | 2285 | 100 | Plus |
3L | 28110227 | 3L | 16005290..16005327 | 17..54 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:40:17 has no hits.
BO13654.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:37 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 1..1131 | 17..1148 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:37 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 94..1229 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:49:02 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 103..1225 | 22..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:38 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 94..1229 | 17..1153 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:16:27 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
mRpS31-RA | 103..1225 | 22..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:16:27 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 16005295..16005327 | 22..54 | 100 | -> | Plus |
3L | 16005392..16005847 | 55..510 | 100 | -> | Plus |
3L | 16005914..16006547 | 511..1146 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:49:02 Download gff for
BO13654.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15998395..15998427 | 22..54 | 100 | -> | Plus |
arm_3L | 15998492..15998947 | 55..510 | 100 | -> | Plus |
arm_3L | 15999014..15999647 | 511..1146 | 99 | | Plus |
BO13654.pep Sequence
Translation from 16 to 1162
> BO13654.pep
MLAVRSSQRLGLRSLLPSAFKNVGLVNYSSSQSKNDDGYSSSDDEKPTKK
KEEPVETAAQRLNRLLGTMQATDQLSASDFPRPGDANRKRREAQKQEAAA
KNVLTAAKNIASMLGTSESDKKQTESELLAKLLGHGSESSSAATGENQTA
DVSGSPSGDKELNLSDIIVGMKIDRRQQPQQVEQTRGEYVRRSLASRFKP
QNRDGAYQRSQRQTKREAESFTGSVNLYGGEPLGIFKDTQLPISNDILST
WSQLSERELSLQASHPPANYFEQMVLWTDQKKVWRFPINNEQDWEDEHNV
DFSEHIFLEQHLEDWCPSKGPIRHFMELVCVGLSKNPYLTAQEKKDHIFW
FRDYFQAKKDILRDLISKEPSKSISAASFLDH
BO13654.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mRpS31-PA | 376 | CG5904-PA | 1..376 | 1..376 | 1937 | 100 | Plus |