Clone BO13657 Report

Search the DGRC for BO13657

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG4267-RA
Protein status:BO13657.pep: validated full length
Sequenced Size:1156

Clone Sequence Records

BO13657.3prime Sequence

815 bp (714 high quality bases) assembled on 2006-05-08

> BO13657.3prime
ATGGTCTAGAAAGCTTGCCTCTTCCGTGGAGTTCTCAATATCATCTTCCC
GTGGAGGCGGTTCCGTTTGCCACCTGTGGCCCATGGCATAGGGTGGCTTT
GAGTAGGTTTTCACATAGAAAGTTCCGTTCTTGGGGATTGAGGGCTCCCC
GCCCATCCGGAACTCTCCATCGCTCATTAGGAGCAGCCAGGTGCCATCAT
CGTGACGCTCGCAGCGCGGTCCCCAAAATCCCGCCGGACTCGTCAGCGAC
TCTATGAAGTAGTCATGGGATCTCTTATGAGAACAGCCATAGACATAGCA
TTTCTTCTGATTCTTCCCATAGTTGGGATAGAAGGTGGCGTGTCCCACGG
GCTGCTCGAAGCCAAAGCTAACGCTGGTTTGAATGGACTCCACATAGGAG
GCGTCACTAGCATCGATTCGGTACTCGTCGCTCTTCTCCCGGAACTGTGG
ACCCGCCGGATCCAGAGCGTATATGGTGTTGAATCGATATGGCATTATCT
GCTTGCCAGCACTGCCGGCGATCTGCGCTCCCAGAGAGTGTCCAATGACG
TATACGTCGTCGTAGTGCATGTTCGCCTCCTGGTTCAGATAGCGCACCAG
TTCCGCCAGCAGGGCTCCCATGTCCTCCACCGTCTTGGCCACCTCGTAGT
AGTTTACGTTCGTGGAAGTCTTTGCTCCAGTCACATACGATCACATTGAA
GTCCTCGTAGGGGGCGGGCTCTCCGTTGGGTCCCGGATCGGTCAGGCTGA
GGTATGCGTTCTTTACCTTCCTTATATGCAAACCTTTGCTCTGACTCATC
CAGCCATTGAATGAC

BO13657.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PA 1125 CG4267-RA 469..1122 672..19 3270 100 Minus
CG4267-PA 1125 CG4267-RA 335..470 807..672 630 98.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 472..1266 815..19 3905 99.5 Minus
CG4267-RA 1322 CG4267-RA 472..1266 815..19 3905 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243571..2244358 807..19 3865 99.6 Minus
Blast to na_te.dros performed on 2015-02-10 15:21:08 has no hits.

BO13657.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:30 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-PA 328..1125 18..815 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:40 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-PA 328..1125 18..815 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:34 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 472..1266 19..815 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:57 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 472..1266 19..815 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:57 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 2243564..2244358 19..815 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:34 Download gff for BO13657.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2243564..2244358 19..815 99   Minus

BO13657.5prime Sequence

810 bp (807 high quality bases) assembled on 2006-05-08

> BO13657.5prime
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTG
GCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTGGATCCG
GCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGATGCTAG
TGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTGGCTTCG
AGCAGCCCGT

BO13657.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PA 1125 CG4267-RA 1..794 17..810 3970 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:56:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 144..938 16..810 3975 100 Plus
CG4267-RA 1322 CG4267-RA 144..938 16..810 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2244030 338..810 2365 100 Plus
2L 23513712 2L 2242692..2242946 86..340 1275 100 Plus
2L 23513712 2L 2242521..2242591 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-09 08:56:37 has no hits.

BO13657.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:31 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:41 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-PA 1..794 17..810 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:34 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..938 9..810 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:27 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..938 9..810 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:27 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2242517..2242591 9..86 96 -> Plus
2L 2242693..2242945 87..339 100 -> Plus
2L 2243560..2244030 340..810 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:34 Download gff for BO13657.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2242517..2242591 9..86 96 -> Plus
arm_2L 2242693..2242945 87..339 100 -> Plus
arm_2L 2243560..2244030 340..810 100   Plus

BO13657.complete Sequence

1156 bp assembled on 2006-10-11

GenBank Submission: FJ632890

> BO13657.complete
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTG
GCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTGGATCCG
GCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGATGCTAG
TGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTGGCTTCG
AGCAGCCCGTGGGACACGCCACCTTCTATCCCAACTATGGGAAGAATCAG
AAGAAATGCTATGTCTATGGCTGTTCTCATAAGAGATCCCATGACTACTT
CATAGAGTCGCTGACGAGTCCGGCGGGATTTTGGGGACCGCGCTGCGAGC
GTCACGATGATGGCACCTGGCTGCTCCTAATGAGCGATGGAGAGTTCCGG
ATGGGCGGGGAGCCCTCAATCCCCAAGAACGGAACTTTCTATGTGAAAAC
CTACTCAAAGCCACCCTATGCCATGGGCCACAGGTGGCAAACGGAACCGC
CTCCACGGGAAGATGATATTGAGAACTCCACGGAAGAGGCAAGCTTTCTA
GACCAT

BO13657.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 1125 CG4267-PB 1..1122 17..1138 5610 100 Plus
CG4267-RA 1125 CG4267-PA 1..1122 17..1138 5610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-RB 2182 CG4267-RB 144..1266 16..1138 5615 100 Plus
CG4267-RA 1322 CG4267-RA 144..1266 16..1138 5615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2243558..2244358 338..1138 4005 100 Plus
2L 23513712 2L 2242692..2242946 86..340 1275 100 Plus
2L 23513712 2L 2242521..2242591 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:53:10 has no hits.

BO13657.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:40 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 1..1125 17..1139 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:41 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..1266 9..1138 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:57 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1266 17..1140 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:40 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 140..1266 9..1138 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:39 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
CG4267-RA 145..1266 17..1140 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:39 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
2L 2242522..2242591 17..86 100 -> Plus
2L 2242693..2242945 87..339 100 -> Plus
2L 2243560..2244358 340..1140 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:57 Download gff for BO13657.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2242522..2242591 17..86 100 -> Plus
arm_2L 2242693..2242945 87..339 100 -> Plus
arm_2L 2243560..2244358 340..1140 99   Plus

BO13657.pep Sequence

Translation from 16 to 1156

> BO13657.pep
MISQLGRISIMSAVLLAFAAIVFASSSEKTELDPNATCNYTLVKKKTLGV
DPSFWKKFFKHLIPFTSSRGKMQFILFKRDFADCGRELFVGDVENLRNSG
FDARHQTRIVIHGWMSQSKGSHIRKVKNAYLSLTDPGPNGEPAPYEDFNV
IVCDWSKTSTNVNYYEVAKTVEDMGALLAELVRYLNQEANMHYDDVYVIG
HSLGAQIAGSAGKQIMPYRFNTIYALDPAGPQFREKSDEYRIDASDASYV
ESIQTSVSFGFEQPVGHATFYPNYGKNQKKCYVYGCSHKRSHDYFIESLT
SPAGFWGPRCERHDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPP
YAMGHRWQTEPPPREDDIENSTEEASFLDH

BO13657.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG4267-PB 374 CG4267-PB 1..374 1..374 2014 100 Plus
CG4267-PA 374 CG4267-PA 1..374 1..374 2014 100 Plus
CG6675-PC 386 CG6675-PC 77..384 37..354 821 51.7 Plus
CG6675-PB 390 CG6675-PB 81..388 37..354 821 51.7 Plus
sxe2-PB 387 CG4979-PB 90..385 91..376 416 31.8 Plus