Clone Sequence Records
BO13657.3prime Sequence
815 bp (714 high quality bases) assembled on 2006-05-08
> BO13657.3prime
ATGGTCTAGAAAGCTTGCCTCTTCCGTGGAGTTCTCAATATCATCTTCCC
GTGGAGGCGGTTCCGTTTGCCACCTGTGGCCCATGGCATAGGGTGGCTTT
GAGTAGGTTTTCACATAGAAAGTTCCGTTCTTGGGGATTGAGGGCTCCCC
GCCCATCCGGAACTCTCCATCGCTCATTAGGAGCAGCCAGGTGCCATCAT
CGTGACGCTCGCAGCGCGGTCCCCAAAATCCCGCCGGACTCGTCAGCGAC
TCTATGAAGTAGTCATGGGATCTCTTATGAGAACAGCCATAGACATAGCA
TTTCTTCTGATTCTTCCCATAGTTGGGATAGAAGGTGGCGTGTCCCACGG
GCTGCTCGAAGCCAAAGCTAACGCTGGTTTGAATGGACTCCACATAGGAG
GCGTCACTAGCATCGATTCGGTACTCGTCGCTCTTCTCCCGGAACTGTGG
ACCCGCCGGATCCAGAGCGTATATGGTGTTGAATCGATATGGCATTATCT
GCTTGCCAGCACTGCCGGCGATCTGCGCTCCCAGAGAGTGTCCAATGACG
TATACGTCGTCGTAGTGCATGTTCGCCTCCTGGTTCAGATAGCGCACCAG
TTCCGCCAGCAGGGCTCCCATGTCCTCCACCGTCTTGGCCACCTCGTAGT
AGTTTACGTTCGTGGAAGTCTTTGCTCCAGTCACATACGATCACATTGAA
GTCCTCGTAGGGGGCGGGCTCTCCGTTGGGTCCCGGATCGGTCAGGCTGA
GGTATGCGTTCTTTACCTTCCTTATATGCAAACCTTTGCTCTGACTCATC
CAGCCATTGAATGAC
BO13657.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-PA | 1125 | CG4267-RA | 469..1122 | 672..19 | 3270 | 100 | Minus |
CG4267-PA | 1125 | CG4267-RA | 335..470 | 807..672 | 630 | 98.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-RB | 2182 | CG4267-RB | 472..1266 | 815..19 | 3905 | 99.5 | Minus |
CG4267-RA | 1322 | CG4267-RA | 472..1266 | 815..19 | 3905 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:21:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2243571..2244358 | 807..19 | 3865 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:21:08 has no hits.
BO13657.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:30 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-PA | 328..1125 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:40 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-PA | 328..1125 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:54:34 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 472..1266 | 19..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:52:57 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 472..1266 | 19..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:52:57 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2243564..2244358 | 19..815 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:54:34 Download gff for
BO13657.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2243564..2244358 | 19..815 | 99 | | Minus |
BO13657.5prime Sequence
810 bp (807 high quality bases) assembled on 2006-05-08
> BO13657.5prime
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTG
GCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTGGATCCG
GCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGATGCTAG
TGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTGGCTTCG
AGCAGCCCGT
BO13657.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-PA | 1125 | CG4267-RA | 1..794 | 17..810 | 3970 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 08:56:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-RB | 2182 | CG4267-RB | 144..938 | 16..810 | 3975 | 100 | Plus |
CG4267-RA | 1322 | CG4267-RA | 144..938 | 16..810 | 3975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 08:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2243558..2244030 | 338..810 | 2365 | 100 | Plus |
2L | 23513712 | 2L | 2242692..2242946 | 86..340 | 1275 | 100 | Plus |
2L | 23513712 | 2L | 2242521..2242591 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 08:56:37 has no hits.
BO13657.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:31 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:41 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-PA | 1..794 | 17..810 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 18:14:34 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 140..938 | 9..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 11:44:27 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 140..938 | 9..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 11:44:27 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2242517..2242591 | 9..86 | 96 | -> | Plus |
2L | 2242693..2242945 | 87..339 | 100 | -> | Plus |
2L | 2243560..2244030 | 340..810 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 18:14:34 Download gff for
BO13657.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2242517..2242591 | 9..86 | 96 | -> | Plus |
arm_2L | 2242693..2242945 | 87..339 | 100 | -> | Plus |
arm_2L | 2243560..2244030 | 340..810 | 100 | | Plus |
BO13657.complete Sequence
1156 bp assembled on 2006-10-11
GenBank Submission: FJ632890
> BO13657.complete
GAAGTTATCAGTCGACATGATCTCGCAGCTGGGACGGATTAGCATCATGA
GTGCGGTGCTTTTGGCATTTGCGGCCATCGTATTTGCCAGCAGCTCGGAG
AAAACCGAACTCGATCCCAATGCCACCTGCAACTACACGCTGGTGAAGAA
GAAGACCTTGGGGGTGGATCCCTCGTTCTGGAAGAAGTTCTTCAAGCACC
TCATACCCTTCACGAGTTCGAGGGGCAAAATGCAGTTCATACTCTTCAAG
CGGGACTTCGCGGACTGCGGAAGGGAACTGTTCGTGGGCGATGTGGAAAA
CCTGAGGAACTCGGGCTTCGATGCACGTCATCAAACAAGGATAGTCATTC
ATGGCTGGATGAGTCAGAGCAAAGGTTCGCATATAAGGAAGGTTAAGAAC
GCATACCTCAGCCTGACCGATCCGGGACCCAACGGAGAGCCCGCCCCCTA
CGAGGACTTCAATGTGATCGTATGTGACTGGAGCAAGACTTCCACGAACG
TAAACTACTACGAGGTGGCCAAGACGGTGGAGGACATGGGAGCCCTGCTG
GCGGAACTGGTGCGCTATCTGAACCAGGAGGCGAACATGCACTACGACGA
CGTATACGTCATTGGACACTCTCTGGGAGCGCAGATCGCCGGCAGTGCTG
GCAAGCAGATAATGCCATATCGATTCAACACCATATACGCTCTGGATCCG
GCGGGTCCACAGTTCCGGGAGAAGAGCGACGAGTACCGAATCGATGCTAG
TGACGCCTCCTATGTGGAGTCCATTCAAACCAGCGTTAGCTTTGGCTTCG
AGCAGCCCGTGGGACACGCCACCTTCTATCCCAACTATGGGAAGAATCAG
AAGAAATGCTATGTCTATGGCTGTTCTCATAAGAGATCCCATGACTACTT
CATAGAGTCGCTGACGAGTCCGGCGGGATTTTGGGGACCGCGCTGCGAGC
GTCACGATGATGGCACCTGGCTGCTCCTAATGAGCGATGGAGAGTTCCGG
ATGGGCGGGGAGCCCTCAATCCCCAAGAACGGAACTTTCTATGTGAAAAC
CTACTCAAAGCCACCCTATGCCATGGGCCACAGGTGGCAAACGGAACCGC
CTCCACGGGAAGATGATATTGAGAACTCCACGGAAGAGGCAAGCTTTCTA
GACCAT
BO13657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-RB | 1125 | CG4267-PB | 1..1122 | 17..1138 | 5610 | 100 | Plus |
CG4267-RA | 1125 | CG4267-PA | 1..1122 | 17..1138 | 5610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:53:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-RB | 2182 | CG4267-RB | 144..1266 | 16..1138 | 5615 | 100 | Plus |
CG4267-RA | 1322 | CG4267-RA | 144..1266 | 16..1138 | 5615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:53:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 2243558..2244358 | 338..1138 | 4005 | 100 | Plus |
2L | 23513712 | 2L | 2242692..2242946 | 86..340 | 1275 | 100 | Plus |
2L | 23513712 | 2L | 2242521..2242591 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:53:10 has no hits.
BO13657.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:40 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 1..1125 | 17..1139 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:41 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 140..1266 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:53:57 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 145..1266 | 17..1140 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:40 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 140..1266 | 9..1138 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:06:39 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4267-RA | 145..1266 | 17..1140 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:06:39 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 2242522..2242591 | 17..86 | 100 | -> | Plus |
2L | 2242693..2242945 | 87..339 | 100 | -> | Plus |
2L | 2243560..2244358 | 340..1140 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:53:57 Download gff for
BO13657.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 2242522..2242591 | 17..86 | 100 | -> | Plus |
arm_2L | 2242693..2242945 | 87..339 | 100 | -> | Plus |
arm_2L | 2243560..2244358 | 340..1140 | 99 | | Plus |
BO13657.pep Sequence
Translation from 16 to 1156
> BO13657.pep
MISQLGRISIMSAVLLAFAAIVFASSSEKTELDPNATCNYTLVKKKTLGV
DPSFWKKFFKHLIPFTSSRGKMQFILFKRDFADCGRELFVGDVENLRNSG
FDARHQTRIVIHGWMSQSKGSHIRKVKNAYLSLTDPGPNGEPAPYEDFNV
IVCDWSKTSTNVNYYEVAKTVEDMGALLAELVRYLNQEANMHYDDVYVIG
HSLGAQIAGSAGKQIMPYRFNTIYALDPAGPQFREKSDEYRIDASDASYV
ESIQTSVSFGFEQPVGHATFYPNYGKNQKKCYVYGCSHKRSHDYFIESLT
SPAGFWGPRCERHDDGTWLLLMSDGEFRMGGEPSIPKNGTFYVKTYSKPP
YAMGHRWQTEPPPREDDIENSTEEASFLDH
BO13657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4267-PB | 374 | CG4267-PB | 1..374 | 1..374 | 2014 | 100 | Plus |
CG4267-PA | 374 | CG4267-PA | 1..374 | 1..374 | 2014 | 100 | Plus |
CG6675-PC | 386 | CG6675-PC | 77..384 | 37..354 | 821 | 51.7 | Plus |
CG6675-PB | 390 | CG6675-PB | 81..388 | 37..354 | 821 | 51.7 | Plus |
sxe2-PB | 387 | CG4979-PB | 90..385 | 91..376 | 416 | 31.8 | Plus |