Clone BO13659 Report

Search the DGRC for BO13659

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:59
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

BO13659.3prime Sequence

842 bp (756 high quality bases) assembled on 2006-05-08

> BO13659.3prime
ATGGTCTAGAAAGCCTTTCCAATGCAAAAGTCCTTGAAGACCACGTCGAG
TATATCTTCGCAGCTGATGTGTCCGGTGATGCGTTCGATGCAGCGCACGG
AGTTGCGCAGCTTGGAGGCGGCTATGGCCATGTCCGGGTAAACGTCGGGT
CTGTAATCTCGTAGAAAAATATCAATGTTCTCAATGCAGCGCTCCAGTTG
CTGACGGTAGCGTGTGTTTGTGATGCGTGGATTCTCCGCCCGCGGTTCTC
CGCACAGTTCTTGCAGCTGCTTCTCCAGTGATCCCAGAAACACGGGCATC
TTATCGGGCTTATGGCATGATATGGCTAACACGTTGGACAGCTTGTCCAG
CTGCTGATGCTCCTCATCCGTCAAAGTGTCGGTTTTATTGGCCACCAATT
GCAGACGTTTCCCTGAGCACATGTCCAGAGGTATATCCAACTCGCCCAGA
TAGCTATCTACAAACGGAGCAACTGCGTCGTCGTGCGTCAGCTGTGCAAT
GTTCTTGGCTTCTGCTAGGAGCAATATCAAATCAGATTGGACTAGACAAT
TCTTGGCTCTCTGCATTCCCTCCTGCTCTATACTATCCGTAGTATATCGG
CGTAATCCGGCTGTGTCGGAAAATACCACCGGGTATCCTCCGAAATTGTG
CATTGTTTCTATAATATCCCTTGTGGTGCCCGCCTGATCCGTCACTATGG
ACACGGATCGCTGGCAGAGGAGATTGAGCAGACTACTCTTGCCAACATTG
GGTGCTCCAATGATCACAGTGCGGACTCCGTCGCGGAGGAGCTCTCCCTG
CCGCTGGTCACTCAAATGCTCGCGAATCTCACGCTTTACCGC

BO13659.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-PA 1482 CG18528-RA 652..1479 842..15 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:46:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-RA 1676 CG18528-RA 730..1557 842..15 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24358214..24359041 15..842 4140 100 Plus
Blast to na_te.dros performed on 2015-02-10 14:46:48 has no hits.

BO13659.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:32 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-PA 652..1482 13..842 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:43 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-PA 652..1482 13..842 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:51:49 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 730..1557 15..842 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:00 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 730..1557 15..842 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:00 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 24358214..24359041 15..842 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:51:49 Download gff for BO13659.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20183936..20184763 15..842 100   Plus

BO13659.5prime Sequence

866 bp (763 high quality bases) assembled on 2006-05-08

> BO13659.5prime
GAAGTTATCAGTCGACATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCT
TGGGCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTC
AGTTCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCC
GCAAACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGC
CAAAGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAA
GAGATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTT
CACTGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCA
TTGCGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCG
GAGCCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTT
GACAGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGC
AAAGAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTAC
GACAACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTA
CATAGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAAC
TCGGCAAAGAACTAAAGGCGGTAAAGCGTGAGATTCGCGAGCATTTGAGT
GACCAGCGGCAGGGAGAGCTCCTCCGCGACGGAGTCCGCACTGTGATCAT
TGGAGCACCCAATGTTGGGAAGAGTAGTCTGCTCAATCTCCTCTGCCAGC
GATCCGTGTCCATAGTGACGGATCAGGCGGGCACCACAAGGGATATTATA
GAAAACATGCACAATT

BO13659.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-PA 1482 CG18528-RA 1..850 17..866 4175 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG18528-RA 1676 CG18528-RA 79..928 17..866 4205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:59:22
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24358843..24359200 866..509 1745 99.2 Minus
3R 32079331 3R 24359253..24359561 512..204 1545 100 Minus
3R 32079331 3R 24359876..24360066 207..17 955 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:59:26 has no hits.

BO13659.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:33 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-PA 1..850 17..866 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:44 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-PA 1..850 17..866 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:50:31 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 73..928 8..866 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:44 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18528-RA 73..928 8..866 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:44 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24359878..24360072 8..205 97   Minus
3R 24358843..24359197 512..866 99 <- Minus
3R 24359254..24359559 206..511 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:50:31 Download gff for BO13659.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20184565..20184919 512..866 99 <- Minus
arm_3R 20184976..20185281 206..511 100 <- Minus
arm_3R 20185600..20185794 8..205 97   Minus