BO13659.3prime Sequence
842 bp (756 high quality bases) assembled on 2006-05-08
> BO13659.3prime
ATGGTCTAGAAAGCCTTTCCAATGCAAAAGTCCTTGAAGACCACGTCGAG
TATATCTTCGCAGCTGATGTGTCCGGTGATGCGTTCGATGCAGCGCACGG
AGTTGCGCAGCTTGGAGGCGGCTATGGCCATGTCCGGGTAAACGTCGGGT
CTGTAATCTCGTAGAAAAATATCAATGTTCTCAATGCAGCGCTCCAGTTG
CTGACGGTAGCGTGTGTTTGTGATGCGTGGATTCTCCGCCCGCGGTTCTC
CGCACAGTTCTTGCAGCTGCTTCTCCAGTGATCCCAGAAACACGGGCATC
TTATCGGGCTTATGGCATGATATGGCTAACACGTTGGACAGCTTGTCCAG
CTGCTGATGCTCCTCATCCGTCAAAGTGTCGGTTTTATTGGCCACCAATT
GCAGACGTTTCCCTGAGCACATGTCCAGAGGTATATCCAACTCGCCCAGA
TAGCTATCTACAAACGGAGCAACTGCGTCGTCGTGCGTCAGCTGTGCAAT
GTTCTTGGCTTCTGCTAGGAGCAATATCAAATCAGATTGGACTAGACAAT
TCTTGGCTCTCTGCATTCCCTCCTGCTCTATACTATCCGTAGTATATCGG
CGTAATCCGGCTGTGTCGGAAAATACCACCGGGTATCCTCCGAAATTGTG
CATTGTTTCTATAATATCCCTTGTGGTGCCCGCCTGATCCGTCACTATGG
ACACGGATCGCTGGCAGAGGAGATTGAGCAGACTACTCTTGCCAACATTG
GGTGCTCCAATGATCACAGTGCGGACTCCGTCGCGGAGGAGCTCTCCCTG
CCGCTGGTCACTCAAATGCTCGCGAATCTCACGCTTTACCGC
BO13659.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18528-PA | 1482 | CG18528-RA | 652..1479 | 842..15 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 14:46:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18528-RA | 1676 | CG18528-RA | 730..1557 | 842..15 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 14:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24358214..24359041 | 15..842 | 4140 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 14:46:48 has no hits.
BO13659.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:32 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-PA | 652..1482 | 13..842 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:43 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-PA | 652..1482 | 13..842 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 20:51:49 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-RA | 730..1557 | 15..842 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 17:48:00 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-RA | 730..1557 | 15..842 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 17:48:00 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24358214..24359041 | 15..842 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 20:51:49 Download gff for
BO13659.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20183936..20184763 | 15..842 | 100 | | Plus |
BO13659.5prime Sequence
866 bp (763 high quality bases) assembled on 2006-05-08
> BO13659.5prime
GAAGTTATCAGTCGACATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCT
TGGGCAGTTTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTC
AGTTCCGGTCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCC
GCAAACAAAGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGC
CAAAGGCTCGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAA
GAGATGATTGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTT
CACTGGCGAGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCA
TTGCGGCCATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCG
GAGCCGGGAGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTT
GACAGAGGTGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGC
AAAGAAAGCAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTAC
GACAACTGGCGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTA
CATAGACTTCGCCGAAGAGGAGCAAATCGAAGGCGGCATCATCCTGCAAC
TCGGCAAAGAACTAAAGGCGGTAAAGCGTGAGATTCGCGAGCATTTGAGT
GACCAGCGGCAGGGAGAGCTCCTCCGCGACGGAGTCCGCACTGTGATCAT
TGGAGCACCCAATGTTGGGAAGAGTAGTCTGCTCAATCTCCTCTGCCAGC
GATCCGTGTCCATAGTGACGGATCAGGCGGGCACCACAAGGGATATTATA
GAAAACATGCACAATT
BO13659.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18528-PA | 1482 | CG18528-RA | 1..850 | 17..866 | 4175 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:59:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18528-RA | 1676 | CG18528-RA | 79..928 | 17..866 | 4205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:59:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24358843..24359200 | 866..509 | 1745 | 99.2 | Minus |
3R | 32079331 | 3R | 24359253..24359561 | 512..204 | 1545 | 100 | Minus |
3R | 32079331 | 3R | 24359876..24360066 | 207..17 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:59:26 has no hits.
BO13659.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:33 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:44 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 08:50:31 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-RA | 73..928 | 8..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:22:44 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18528-RA | 73..928 | 8..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:22:44 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24359878..24360072 | 8..205 | 97 | | Minus |
3R | 24358843..24359197 | 512..866 | 99 | <- | Minus |
3R | 24359254..24359559 | 206..511 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 08:50:31 Download gff for
BO13659.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20184565..20184919 | 512..866 | 99 | <- | Minus |
arm_3R | 20184976..20185281 | 206..511 | 100 | <- | Minus |
arm_3R | 20185600..20185794 | 8..205 | 97 | | Minus |