Clone BO13662 Report

Search the DGRC for BO13662

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG15529-RA
Protein status:BO13662.pep: validated full length
Sequenced Size:622

Clone Sequence Records

BO13662.3prime Sequence

620 bp (619 high quality bases) assembled on 2006-05-08

> BO13662.3prime
ATGGTCTAGAAAGCTTGCAGCGTAACTGATGGGACGGAGTTGGACGCACT
GGCTCCGGACCTTGTTGGTGCAGAGAAGTGGATGCTCCGTGTAGAACTCC
ACGATTTCCGAGGGGGATCCGAAGCAGCGCTCCTGAGACTTCTTCTGACC
AATGGCATAGCGTTGTCTCCTATCCACTTGCCTTATGAACAGGTGATAGT
ACTGATCCGCCGCCCAGATGCTCACTATGTAACGGATCCACTGGTCGGCT
GCCTTGAAAGGTCGAACCAGGCAGGACCCGTCCTCTCGTCCATGGAGCAT
TCGCTCCGCCGTAGGACGATCCACTGTGAAGTAGTACTGCTCCTTTTCCA
CATGCCTCTCCTCAATCTCCGCGTAGTTGACATCGGCATCGTCCACAATG
ACGTAATCCTCACGGGGCTGCTGTTGTGGATCGTCGTCGGTGCTGGAAAC
CCGTTCTGCGACGTCACCTTCCTGACTGGCCTGCCGCTGATAACCGAAGC
AGCAGCTACAGAAGGTGGGCGATCTGACTTCCATCAGGCTGTCCATCATG
CGAGCCAGGAGATTGTGCAGAACCGTCCAGTAGACACGTGCACACCAGCA
GCACATGTCGACTGATAACT

BO13662.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PA 591 CG15529-RA 1..588 606..19 2940 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..710 607..19 2945 100 Minus
CG15529-RA 965 CG15529-RA 122..710 607..19 2945 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153016 393..19 1875 100 Minus
3R 32079331 3R 30152180..30152394 607..393 1075 100 Minus
Blast to na_te.dros performed 2015-02-03 07:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 474..430 126 75.6 Minus

BO13662.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:34 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:45 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 18..606 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:24 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..715 12..610 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:46 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..715 12..610 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:46 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30152177..30152394 393..610 99 -> Minus
3R 30152643..30153021 12..392 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:24 Download gff for BO13662.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25977899..25978116 393..610 99 -> Minus
arm_3R 25978365..25978743 12..392 99   Minus

BO13662.5prime Sequence

620 bp (619 high quality bases) assembled on 2006-05-08

> BO13662.5prime
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTGCAAGCTTTCTAGACC

BO13662.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PA 591 CG15529-RA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..710 16..604 2945 100 Plus
CG15529-RA 965 CG15529-RA 122..710 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153016 230..604 1875 100 Plus
3R 32079331 3R 30152180..30152394 16..230 1075 100 Plus
Blast to na_te.dros performed 2015-02-13 02:15:09
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 149..193 126 75.6 Plus

BO13662.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:35 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:47 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-PA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:10 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..715 13..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:28 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 119..715 13..611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:28 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30152177..30152394 13..230 99 -> Plus
3R 30152643..30153021 231..611 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:10 Download gff for BO13662.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25977899..25978116 13..230 99 -> Plus
arm_3R 25978365..25978743 231..611 99   Plus

BO13662.complete Sequence

622 bp assembled on 2006-10-11

GenBank Submission: FJ632891

> BO13662.complete
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTGCAAGCTTTCTAGACCAT

BO13662.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 591 CG15529-PB 1..588 17..604 2940 100 Plus
CG15529-RA 591 CG15529-PA 1..588 17..604 2940 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-RB 1393 CG15529-RB 122..710 16..604 2945 100 Plus
CG15529-RA 965 CG15529-RA 122..710 16..604 2945 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30152642..30153016 230..604 1875 100 Plus
3R 32079331 3R 30152180..30152394 16..230 1075 100 Plus
Blast to na_te.dros performed 2014-11-26 14:50:19
Subject Length Description Subject Range Query Range Score Percent Strand
1731 4648 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). 2562..2606 149..193 126 75.6 Plus

BO13662.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:41 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 1..591 17..605 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:42 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 116..712 13..611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:45 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 123..710 17..606 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:41 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 116..712 13..611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:12 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
CG15529-RA 123..710 17..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:12 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30152181..30152394 17..230 100 -> Plus
3R 30152643..30153016 231..606 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:45 Download gff for BO13662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25978365..25978738 231..606 99   Plus
arm_3R 25977903..25978116 17..230 100 -> Plus

BO13662.pep Sequence

Translation from 16 to 622

> BO13662.pep
MCCWCARVYWTVLHNLLARMMDSLMEVRSPTFCSCCFGYQRQASQEGDVA
ERVSSTDDDPQQQPREDYVIVDDADVNYAEIEERHVEKEQYYFTVDRPTA
ERMLHGREDGSCLVRPFKAADQWIRYIVSIWAADQYYHLFIRQVDRRQRY
AIGQKKSQERCFGSPSEIVEFYTEHPLLCTNKVRSQCVQLRPISYAASFL
DH

BO13662.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG15529-PB 196 CG15529-PB 1..196 1..196 1068 100 Plus
CG15529-PA 196 CG15529-PA 1..196 1..196 1068 100 Plus