Clone Sequence Records
BO13662.3prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-08
> BO13662.3prime
ATGGTCTAGAAAGCTTGCAGCGTAACTGATGGGACGGAGTTGGACGCACT
GGCTCCGGACCTTGTTGGTGCAGAGAAGTGGATGCTCCGTGTAGAACTCC
ACGATTTCCGAGGGGGATCCGAAGCAGCGCTCCTGAGACTTCTTCTGACC
AATGGCATAGCGTTGTCTCCTATCCACTTGCCTTATGAACAGGTGATAGT
ACTGATCCGCCGCCCAGATGCTCACTATGTAACGGATCCACTGGTCGGCT
GCCTTGAAAGGTCGAACCAGGCAGGACCCGTCCTCTCGTCCATGGAGCAT
TCGCTCCGCCGTAGGACGATCCACTGTGAAGTAGTACTGCTCCTTTTCCA
CATGCCTCTCCTCAATCTCCGCGTAGTTGACATCGGCATCGTCCACAATG
ACGTAATCCTCACGGGGCTGCTGTTGTGGATCGTCGTCGGTGCTGGAAAC
CCGTTCTGCGACGTCACCTTCCTGACTGGCCTGCCGCTGATAACCGAAGC
AGCAGCTACAGAAGGTGGGCGATCTGACTTCCATCAGGCTGTCCATCATG
CGAGCCAGGAGATTGTGCAGAACCGTCCAGTAGACACGTGCACACCAGCA
GCACATGTCGACTGATAACT
BO13662.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PA | 591 | CG15529-RA | 1..588 | 606..19 | 2940 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 07:11:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..710 | 607..19 | 2945 | 100 | Minus |
CG15529-RA | 965 | CG15529-RA | 122..710 | 607..19 | 2945 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 07:10:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153016 | 393..19 | 1875 | 100 | Minus |
3R | 32079331 | 3R | 30152180..30152394 | 607..393 | 1075 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 07:11:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 474..430 | 126 | 75.6 | Minus |
BO13662.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:34 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:45 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 18..606 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:28:24 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..715 | 12..610 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 09:43:46 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..715 | 12..610 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 09:43:46 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152177..30152394 | 393..610 | 99 | -> | Minus |
3R | 30152643..30153021 | 12..392 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:28:24 Download gff for
BO13662.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25977899..25978116 | 393..610 | 99 | -> | Minus |
arm_3R | 25978365..25978743 | 12..392 | 99 | | Minus |
BO13662.5prime Sequence
620 bp (619 high quality bases) assembled on 2006-05-08
> BO13662.5prime
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTGCAAGCTTTCTAGACC
BO13662.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PA | 591 | CG15529-RA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..710 | 16..604 | 2945 | 100 | Plus |
CG15529-RA | 965 | CG15529-RA | 122..710 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 02:15:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153016 | 230..604 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 30152180..30152394 | 16..230 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2015-02-13 02:15:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 149..193 | 126 | 75.6 | Plus |
BO13662.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:35 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:47 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-PA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:09:10 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..715 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:32:28 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 119..715 | 13..611 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:32:28 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152177..30152394 | 13..230 | 99 | -> | Plus |
3R | 30152643..30153021 | 231..611 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:09:10 Download gff for
BO13662.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25977899..25978116 | 13..230 | 99 | -> | Plus |
arm_3R | 25978365..25978743 | 231..611 | 99 | | Plus |
BO13662.complete Sequence
622 bp assembled on 2006-10-11
GenBank Submission: FJ632891
> BO13662.complete
GAAGTTATCAGTCGACATGTGCTGCTGGTGTGCACGTGTCTACTGGACGG
TTCTGCACAATCTCCTGGCTCGCATGATGGACAGCCTGATGGAAGTCAGA
TCGCCCACCTTCTGTAGCTGCTGCTTCGGTTATCAGCGGCAGGCCAGTCA
GGAAGGTGACGTCGCAGAACGGGTTTCCAGCACCGACGACGATCCACAAC
AGCAGCCCCGTGAGGATTACGTCATTGTGGACGATGCCGATGTCAACTAC
GCGGAGATTGAGGAGAGGCATGTGGAAAAGGAGCAGTACTACTTCACAGT
GGATCGTCCTACGGCGGAGCGAATGCTCCATGGACGAGAGGACGGGTCCT
GCCTGGTTCGACCTTTCAAGGCAGCCGACCAGTGGATCCGTTACATAGTG
AGCATCTGGGCGGCGGATCAGTACTATCACCTGTTCATAAGGCAAGTGGA
TAGGAGACAACGCTATGCCATTGGTCAGAAGAAGTCTCAGGAGCGCTGCT
TCGGATCCCCCTCGGAAATCGTGGAGTTCTACACGGAGCATCCACTTCTC
TGCACCAACAAGGTCCGGAGCCAGTGCGTCCAACTCCGTCCCATCAGTTA
CGCTGCAAGCTTTCTAGACCAT
BO13662.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:50:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 591 | CG15529-PB | 1..588 | 17..604 | 2940 | 100 | Plus |
CG15529-RA | 591 | CG15529-PA | 1..588 | 17..604 | 2940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:50:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-RB | 1393 | CG15529-RB | 122..710 | 16..604 | 2945 | 100 | Plus |
CG15529-RA | 965 | CG15529-RA | 122..710 | 16..604 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:50:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30152642..30153016 | 230..604 | 1875 | 100 | Plus |
3R | 32079331 | 3R | 30152180..30152394 | 16..230 | 1075 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 14:50:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
1731 | 4648 | 1731 DMTN1731 4648bp Derived from X07656 (g8700) (Rel. 36, Last updated, Version 6). | 2562..2606 | 149..193 | 126 | 75.6 | Plus |
BO13662.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:41 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 1..591 | 17..605 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:42 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 116..712 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:43:45 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 123..710 | 17..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:41 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 116..712 | 13..611 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:12 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15529-RA | 123..710 | 17..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:12 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30152181..30152394 | 17..230 | 100 | -> | Plus |
3R | 30152643..30153016 | 231..606 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:43:45 Download gff for
BO13662.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25978365..25978738 | 231..606 | 99 | | Plus |
arm_3R | 25977903..25978116 | 17..230 | 100 | -> | Plus |
BO13662.pep Sequence
Translation from 16 to 622
> BO13662.pep
MCCWCARVYWTVLHNLLARMMDSLMEVRSPTFCSCCFGYQRQASQEGDVA
ERVSSTDDDPQQQPREDYVIVDDADVNYAEIEERHVEKEQYYFTVDRPTA
ERMLHGREDGSCLVRPFKAADQWIRYIVSIWAADQYYHLFIRQVDRRQRY
AIGQKKSQERCFGSPSEIVEFYTEHPLLCTNKVRSQCVQLRPISYAASFL
DH
BO13662.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15529-PB | 196 | CG15529-PB | 1..196 | 1..196 | 1068 | 100 | Plus |
CG15529-PA | 196 | CG15529-PA | 1..196 | 1..196 | 1068 | 100 | Plus |