Clone Sequence Records
BO13663.3prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-08
> BO13663.3prime
ATGGTCTAGAAAGCTTGCGAAGAACTTAACGCCGTGGCTGCCGTCCATCT
CGATCAGCTCACACCTGCCCTTTTCCTCCAGCAACCGGAGGGCACTGAGC
AGCACCGCCTCGTCCACGCCGTAAAAGTCCAGGTGAGAGGTGTTCTCGCC
GGAGGCTATTTCGTACAGCGTGCAGATGGTGTTCGTCTGGCCCGTTTCCT
GCACCCAGTCGTACACCATGTTGCCGTACTCCTCGAGGGTGAACCAGTAC
ACCTGCCACTCCTGGCGTCGCTTGTCCAGCGGATTCGCATGCCCGCTCCG
CTCCAGCTCGCCCAGAATGGCCAGGACGAGTTCCGGCGAGAGGCGGCGCT
TCAGCGCTTCGTTGTGGAACAGCGGCGAGTTCTGGTCCCCAATGCTGAGA
GTAAACCTATTCGTGTGCCTGAGGTATTTGAGAAAGAGATCTGTCCAGAC
CTTCAGCTGCTGCTGTCTGGTTTCTTCGTGGGGCTGTAGTGTAAAGAAGG
GTGGGAAGGTGTACTCCCAGGGCCACTGGAACTCCGCCATGTCGACTGAT
AACT
BO13663.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14750-PA | 525 | l(2)44Db-RA | 1..522 | 540..19 | 2610 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps25-RA | 678 | CG14750-RA | 75..597 | 541..19 | 2615 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8625628..8626099 | 490..19 | 2360 | 100 | Minus |
2R | 25286936 | 2R | 8625525..8625575 | 541..491 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:10:22 has no hits.
BO13663.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:36 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14750-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:48 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14750-PA | 1..525 | 15..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:29 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 9..550 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:34 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 9..550 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:34 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8625520..8625575 | 491..550 | 93 | -> | Minus |
2R | 8625628..8626102 | 17..490 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:29 Download gff for
BO13663.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4513025..4513080 | 491..550 | 93 | -> | Minus |
arm_2R | 4513133..4513607 | 17..490 | 99 | -> | Minus |
BO13663.5prime Sequence
554 bp (553 high quality bases) assembled on 2006-05-08
> BO13663.5prime
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCGCAAGCTTTCTA
GACC
BO13663.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14750-PA | 525 | l(2)44Db-RA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps25-RA | 678 | CG14750-RA | 75..597 | 16..538 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8625628..8626099 | 67..538 | 2360 | 100 | Plus |
2R | 25286936 | 2R | 8625525..8625575 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:55:46 has no hits.
BO13663.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:37 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14750-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:50 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14750-PA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:27 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 7..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:33:33 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 7..548 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:33:33 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8625520..8625575 | 7..66 | 93 | -> | Plus |
2R | 8625628..8626102 | 67..540 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:27 Download gff for
BO13663.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4513025..4513080 | 7..66 | 93 | -> | Plus |
arm_2R | 4513133..4513607 | 67..540 | 99 | -> | Plus |
BO13663.complete Sequence
556 bp assembled on 2006-10-11
GenBank Submission: FJ632892
> BO13663.complete
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCGCAAGCTTTCTA
GACCAT
BO13663.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps25-RA | 525 | CG14750-PA | 1..522 | 17..538 | 2610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps25-RA | 678 | CG14750-RA | 75..597 | 16..538 | 2615 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8625628..8626099 | 67..538 | 2360 | 100 | Plus |
2R | 25286936 | 2R | 8625525..8625575 | 16..66 | 255 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:02:20 has no hits.
BO13663.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:42 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 1..525 | 17..542 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:44 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 7..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:56 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 76..597 | 17..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:44 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 70..605 | 7..548 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:54 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vps25-RA | 76..597 | 17..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:54 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8625526..8625575 | 17..66 | 100 | -> | Plus |
2R | 8625628..8626099 | 67..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:56 Download gff for
BO13663.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4513031..4513080 | 17..66 | 100 | -> | Plus |
arm_2R | 4513133..4513604 | 67..540 | 99 | | Plus |
BO13663.pep Sequence
Translation from 16 to 556
> BO13663.pep
MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSI
GDQNSPLFHNEALKRRLSPELVLAILGELERSGHANPLDKRRQEWQVYWF
TLEEYGNMVYDWVQETGQTNTICTLYEIASGENTSHLDFYGVDEAVLLSA
LRLLEEKGRCELIEMDGSHGVKFFASFLDH
BO13663.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vps25-PA | 174 | CG14750-PA | 1..174 | 1..174 | 944 | 100 | Plus |