Clone BO13663 Report

Search the DGRC for BO13663

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:63
Vector:pDNR-Dual
Associated Gene/TranscriptVps25-RA
Protein status:BO13663.pep: validated full length
Sequenced Size:556

Clone Sequence Records

BO13663.3prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-08

> BO13663.3prime
ATGGTCTAGAAAGCTTGCGAAGAACTTAACGCCGTGGCTGCCGTCCATCT
CGATCAGCTCACACCTGCCCTTTTCCTCCAGCAACCGGAGGGCACTGAGC
AGCACCGCCTCGTCCACGCCGTAAAAGTCCAGGTGAGAGGTGTTCTCGCC
GGAGGCTATTTCGTACAGCGTGCAGATGGTGTTCGTCTGGCCCGTTTCCT
GCACCCAGTCGTACACCATGTTGCCGTACTCCTCGAGGGTGAACCAGTAC
ACCTGCCACTCCTGGCGTCGCTTGTCCAGCGGATTCGCATGCCCGCTCCG
CTCCAGCTCGCCCAGAATGGCCAGGACGAGTTCCGGCGAGAGGCGGCGCT
TCAGCGCTTCGTTGTGGAACAGCGGCGAGTTCTGGTCCCCAATGCTGAGA
GTAAACCTATTCGTGTGCCTGAGGTATTTGAGAAAGAGATCTGTCCAGAC
CTTCAGCTGCTGCTGTCTGGTTTCTTCGTGGGGCTGTAGTGTAAAGAAGG
GTGGGAAGGTGTACTCCCAGGGCCACTGGAACTCCGCCATGTCGACTGAT
AACT

BO13663.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14750-PA 525 l(2)44Db-RA 1..522 540..19 2610 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:24
Subject Length Description Subject Range Query Range Score Percent Strand
Vps25-RA 678 CG14750-RA 75..597 541..19 2615 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:21
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8625628..8626099 490..19 2360 100 Minus
2R 25286936 2R 8625525..8625575 541..491 255 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:10:22 has no hits.

BO13663.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:36 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14750-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:48 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14750-PA 1..525 15..540 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 05:00:29 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 9..550 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:34 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 9..550 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:34 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 8625520..8625575 491..550 93 -> Minus
2R 8625628..8626102 17..490 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 05:00:29 Download gff for BO13663.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4513025..4513080 491..550 93 -> Minus
arm_2R 4513133..4513607 17..490 99 -> Minus

BO13663.5prime Sequence

554 bp (553 high quality bases) assembled on 2006-05-08

> BO13663.5prime
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCGCAAGCTTTCTA
GACC

BO13663.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14750-PA 525 l(2)44Db-RA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:50
Subject Length Description Subject Range Query Range Score Percent Strand
Vps25-RA 678 CG14750-RA 75..597 16..538 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:55:43
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8625628..8626099 67..538 2360 100 Plus
2R 25286936 2R 8625525..8625575 16..66 255 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:55:46 has no hits.

BO13663.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:37 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14750-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:50 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14750-PA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 17:00:27 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 7..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:33:33 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 7..548 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:33:33 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 8625520..8625575 7..66 93 -> Plus
2R 8625628..8626102 67..540 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 17:00:27 Download gff for BO13663.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4513025..4513080 7..66 93 -> Plus
arm_2R 4513133..4513607 67..540 99 -> Plus

BO13663.complete Sequence

556 bp assembled on 2006-10-11

GenBank Submission: FJ632892

> BO13663.complete
GAAGTTATCAGTCGACATGGCGGAGTTCCAGTGGCCCTGGGAGTACACCT
TCCCACCCTTCTTTACACTACAGCCCCACGAAGAAACCAGACAGCAGCAG
CTGAAGGTCTGGACAGATCTCTTTCTCAAATACCTCAGGCACACGAATAG
GTTTACTCTCAGCATTGGGGACCAGAACTCGCCGCTGTTCCACAACGAAG
CGCTGAAGCGCCGCCTCTCGCCGGAACTCGTCCTGGCCATTCTGGGCGAG
CTGGAGCGGAGCGGGCATGCGAATCCGCTGGACAAGCGACGCCAGGAGTG
GCAGGTGTACTGGTTCACCCTCGAGGAGTACGGCAACATGGTGTACGACT
GGGTGCAGGAAACGGGCCAGACGAACACCATCTGCACGCTGTACGAAATA
GCCTCCGGCGAGAACACCTCTCACCTGGACTTTTACGGCGTGGACGAGGC
GGTGCTGCTCAGTGCCCTCCGGTTGCTGGAGGAAAAGGGCAGGTGTGAGC
TGATCGAGATGGACGGCAGCCACGGCGTTAAGTTCTTCGCAAGCTTTCTA
GACCAT

BO13663.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:02:21
Subject Length Description Subject Range Query Range Score Percent Strand
Vps25-RA 525 CG14750-PA 1..522 17..538 2610 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:02:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vps25-RA 678 CG14750-RA 75..597 16..538 2615 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:02:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 8625628..8626099 67..538 2360 100 Plus
2R 25286936 2R 8625525..8625575 16..66 255 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:02:20 has no hits.

BO13663.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:42 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 1..525 17..542 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:44 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 7..548 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:42:56 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 76..597 17..540 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:44 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 70..605 7..548 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:16:54 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
Vps25-RA 76..597 17..540 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:16:54 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
2R 8625526..8625575 17..66 100 -> Plus
2R 8625628..8626099 67..540 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:42:56 Download gff for BO13663.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 4513031..4513080 17..66 100 -> Plus
arm_2R 4513133..4513604 67..540 99   Plus

BO13663.pep Sequence

Translation from 16 to 556

> BO13663.pep
MAEFQWPWEYTFPPFFTLQPHEETRQQQLKVWTDLFLKYLRHTNRFTLSI
GDQNSPLFHNEALKRRLSPELVLAILGELERSGHANPLDKRRQEWQVYWF
TLEEYGNMVYDWVQETGQTNTICTLYEIASGENTSHLDFYGVDEAVLLSA
LRLLEEKGRCELIEMDGSHGVKFFASFLDH

BO13663.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:04:27
Subject Length Description Subject Range Query Range Score Percent Strand
Vps25-PA 174 CG14750-PA 1..174 1..174 944 100 Plus