Clone Sequence Records
BO13666.3prime Sequence
778 bp (760 high quality bases) assembled on 2006-05-08
> BO13666.3prime
ATGGTCTAGAAAGCTTGCGTTCTGCATCTTGGCCAGCTCCACGATATCCT
CTCGGGGAATGTCCTTGTCCCCGAAGCCCCACACCGGATCCTTGTGGGCA
TGGTCGTCGTCCAGGAAGCGAGTTCCATCGCCGCATTTCTTGGCTCTCCT
CAAGACCATGTCAGGGGATACCGATTTACGTCCTTTGGCCAGGCCTAGCC
AGGCGCAAAAGTCGATGAAGCCGGTGGTGATGTTGAGGCTGTAGTTGCCA
AACTCGCCCGTCTTGTAGTCCCAGGGGAAAACGTGGTGGTAATTGTGCCA
TCCCTCTCCCATGGCCAGCAGGGAGACAATGGGAGCCTCAGTGGACATGA
GGTTCTTGTCGTACGGCTTGTTGCCGTACATGTGCGCCACGCTGTTCACG
AAGAAGGCCACGTTGAGGGTCCAGGTGAAGCGCATGTTGAAGTTGATCCA
GAAGGACATCCAGAGATCCTCGTTCCAGAAGTACCAGGGCACGGCCACCG
GCAGGATGATGGAGCAGAGCGCGAAGAGCGGTATGTAGTACTTCCGCTGG
AACATGCAGACGGCATCCGCCTCCAGATCGGACATGTCGATGACCTTCCT
CTTGGCCACCACCTTGGGATGGGGCGTTAGGAACAGCCAGCCCACGTGGG
CGAAGAAGAAACCACGCTTCGCATTGTGCGGATCGGCGTCTGTCTCCGAG
AACTTGTGATGTATCCTGTGATCAAGGGCCCACGTGTAGGCATCTCTCTG
GCCGGCGATCGAAAAGGCAAAGGCCAGC
BO13666.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-PA | 1263 | CG9743-RA | 501..1260 | 778..19 | 3800 | 100 | Minus |
| CG9747-PA | 1386 | CG9747-RA | 979..1040 | 324..263 | 235 | 95.1 | Minus |
| CG5887-PA | 1152 | desat1-RA | 880..944 | 309..245 | 200 | 92.3 | Minus |
| CG5887-PC | 1152 | desat1-RC | 880..944 | 309..245 | 200 | 92.3 | Minus |
| CG5887-PE | 1152 | desat1-RE | 880..944 | 309..245 | 200 | 92.3 | Minus |
| CG5887-PB | 1152 | desat1-RB | 880..944 | 309..245 | 200 | 92.3 | Minus |
| CG5887-PD | 1152 | desat1-RD | 880..944 | 309..245 | 200 | 92.3 | Minus |
| CG8630-PA | 1227 | CG8630-RA | 859..903 | 306..262 | 150 | 93.3 | Minus |
| CG5887-PA | 1152 | desat1-RA | 489..555 | 700..634 | 135 | 88 | Minus |
| CG5887-PC | 1152 | desat1-RC | 489..555 | 700..634 | 135 | 88 | Minus |
| CG5887-PE | 1152 | desat1-RE | 489..555 | 700..634 | 135 | 88 | Minus |
| CG5887-PB | 1152 | desat1-RB | 489..555 | 700..634 | 135 | 88 | Minus |
| CG5887-PD | 1152 | desat1-RD | 489..555 | 700..634 | 135 | 88 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-RA | 1733 | CG9743-RA | 694..1453 | 778..19 | 3800 | 100 | Minus |
| Desat1-RD | 1934 | CG5887-RD | 979..1094 | 317..202 | 310 | 84.5 | Minus |
| Desat1-RB | 1978 | CG5887-RB | 1023..1138 | 317..202 | 310 | 84.5 | Minus |
| Desat1-RD | 1934 | CG5887-RD | 588..662 | 708..634 | 225 | 86.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30197096..30197491 | 355..750 | 1980 | 100 | Plus |
| 3R | 32079331 | 3R | 30196864..30197041 | 178..355 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 30196640..30196800 | 19..179 | 805 | 100 | Plus |
| 3R | 32079331 | 3R | 12446661..12446776 | 317..202 | 310 | 84.5 | Minus |
| 3R | 32079331 | 3R | 30186150..30186255 | 223..328 | 305 | 85.8 | Plus |
| 3R | 32079331 | 3R | 12446148..12446222 | 708..634 | 225 | 86.7 | Minus |
| 3R | 32079331 | 3R | 13283516..13283602 | 318..232 | 225 | 83.9 | Minus |
| 3R | 32079331 | 3R | 30186709..30186785 | 635..711 | 205 | 84.4 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:18:00 has no hits.
BO13666.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:40 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-PA | 501..1263 | 15..778 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:55 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-PA | 501..1263 | 15..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:20:30 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 694..1459 | 12..778 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:37:08 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 694..1459 | 12..778 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:37:08 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30196634..30196800 | 12..179 | 98 | <- | Plus |
| 3R | 30196866..30197041 | 180..355 | 100 | <- | Plus |
| 3R | 30197097..30197488 | 356..747 | 100 | <- | Plus |
| 3R | 30197551..30197581 | 748..778 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:20:30 Download gff for
BO13666.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26022356..26022522 | 12..179 | 98 | <- | Plus |
| arm_3R | 26022588..26022763 | 180..355 | 100 | <- | Plus |
| arm_3R | 26022819..26023210 | 356..747 | 100 | <- | Plus |
| arm_3R | 26023273..26023303 | 748..778 | 100 | | Plus |
BO13666.5prime Sequence
906 bp (808 high quality bases) assembled on 2006-05-08
> BO13666.5prime
GAAGTTATCAGTCGACATGTGCCTTTCATCCCCGATTCCCGGCCAGAAAC
AGGCGACGTCTGTTGGCCACTGCAACGGATCGTGCAGCCTGGACAGGAAT
GGCAACCGCAGCGCAGCCATTGTCCCGAATGGAGGAGAGCTGAAGCACAG
AGGCCATGCCACAGACGCTACATCACACACCCTGGTCAAAGATGACGACA
ATTTGGGCTACAAGGAGGAGAACGCGGTCTACAAGGAGCAGCAGCTGCTG
CAGCAACAGGACCAGACGCTGAAGGAGGCGGAGCAGGTGGAGGAGGAAGA
GGAGTACCACCCGCAGATCAGATGGCCGGATCTGGGAGCACAGGCATTCC
TGCACATCGGTGCCCTCTACGGACTGTACCAGCTCTTCTACGCGAACTTC
TACACATTCCTCTGGGTGGTGGTCACCGTTTGGGTCTCCGGCATCGGCAT
CACGGCGGGAGCCCATCGCCTCTGGTCCCACAAGTCCTACACTGCATCGC
TGCCCCTGAGGATTCTGCTGGCCTTTGCCTTTTCGATCGCCGGCCAGAGA
GATGCCTACACGTGGGCCCTTGATCACAGGATACATCACAAGTTCTCGGA
GACAGACGCCGATCCGCACAATGCGAAGCGTGGTTTCTTCTTCGCCCACG
TGGGCTGGCTGTTCCTAACGCCCCATCCCAAGGTGGTGGCCAAGAGGAAG
GTCATCGACATGTCCGATCTGGAGGCGGATGCCGTCTGCATGTTCCAGCG
GAAGTACTACATACCGCTCTTCGCGCTCTGCTCCATCATCCTGCCGGTGG
CCGTGCCCTGNTACTTCTGGAACGAGGATCTCTGGATGTCTTTCTGGATC
AACTTCAACATGCGCTTCACCTGGACCCTCACCGTGGCCTTCTTCGTGAA
CAGCGT
BO13666.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-PA | 1263 | CG9743-RA | 1..890 | 17..906 | 4381 | 99.6 | Plus |
| CG5887-PA | 1152 | desat1-RA | 489..555 | 595..661 | 135 | 88 | Plus |
| CG5887-PC | 1152 | desat1-RC | 489..555 | 595..661 | 135 | 88 | Plus |
| CG5887-PE | 1152 | desat1-RE | 489..555 | 595..661 | 135 | 88 | Plus |
| CG5887-PB | 1152 | desat1-RB | 489..555 | 595..661 | 135 | 88 | Plus |
| CG5887-PD | 1152 | desat1-RD | 489..555 | 595..661 | 135 | 88 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:54:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-RA | 1733 | CG9743-RA | 192..1083 | 15..906 | 4419 | 99.7 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 588..662 | 587..661 | 225 | 86.7 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 632..706 | 587..661 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:53:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30198494..30198894 | 416..16 | 2005 | 100 | Minus |
| 3R | 32079331 | 3R | 30197130..30197491 | 906..545 | 1769 | 99.2 | Minus |
| 3R | 32079331 | 3R | 30197551..30197682 | 547..416 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 12446148..12446222 | 587..661 | 225 | 86.7 | Plus |
| 3R | 32079331 | 3R | 30186709..30186785 | 660..584 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:54:00 has no hits.
BO13666.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:41 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:56 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-PA | 1..890 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 23:08:11 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 188..1083 | 9..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:01:36 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 188..1083 | 9..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:01:36 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30197130..30197488 | 548..906 | 99 | <- | Minus |
| 3R | 30197551..30197681 | 417..547 | 100 | <- | Minus |
| 3R | 30198494..30198894 | 16..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 23:08:11 Download gff for
BO13666.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26022852..26023210 | 548..906 | 99 | <- | Minus |
| arm_3R | 26023273..26023403 | 417..547 | 100 | <- | Minus |
| arm_3R | 26024216..26024616 | 16..416 | 100 | | Minus |
BO13666.complete Sequence
1294 bp assembled on 2006-10-11
GenBank Submission: FJ632893
> BO13666.complete
GAAGTTATCAGTCGACATGTGCCTTTCATCCCCGATTCCCGGCCAGAAAC
AGGCGACGTCTGTTGGCCACTGCAACGGATCGTGCAGCCTGGACAGGAAT
GGCAACCGCAGCGCAGCCATTGTCCCGAATGGAGGAGAGCTGAAGCACAG
AGGCCATGCCACAGACGCTACATCACACACCCTGGTCAAAGATGACGACA
ATTTGGGCTACAAGGAGGAGAACGCGGTCTACAAGGAGCAGCAGCTGCTG
CAGCAACAGGACCAGACGCTGAAGGAGGCGGAGCAGGTGGAGGAGGAAGA
GGAGTACCACCCGCAGATCAGATGGCCGGATCTGGGAGCACAGGCATTCC
TGCACATCGGTGCCCTCTACGGACTGTACCAGCTCTTCTACGCGAACTTC
TACACATTCCTCTGGGTGGTGGTCACCGTTTGGGTCTCCGGCATCGGCAT
CACGGCGGGAGCCCATCGCCTCTGGTCCCACAAGTCCTACACTGCATCGC
TGCCCCTGAGGATTCTGCTGGCCTTTGCCTTTTCGATCGCCGGCCAGAGA
GATGCCTACACGTGGGCCCTTGATCACAGGATACATCACAAGTTCTCGGA
GACAGACGCCGATCCGCACAATGCGAAGCGTGGTTTCTTCTTCGCCCACG
TGGGCTGGCTGTTCCTAACGCCCCATCCCAAGGTGGTGGCCAAGAGGAAG
GTCATCGACATGTCCGATCTGGAGGCGGATGCCGTCTGCATGTTCCAGCG
GAAGTACTACATACCGCTCTTCGCGCTCTGCTCCATCATCCTGCCGGTGG
CCGTGCCCTGGTACTTCTGGAACGAGGATCTCTGGATGTCCTTCTGGATC
AACTTCAACATGCGCTTCACCTGGACCCTCAACGTGGCCTTCTTCGTGAA
CAGCGTGGCGCACATGTACGGCAACAAGCCGTACGACAAGAACCTCATGT
CCACTGAGGCTCCCATTGTCTCCCTGCTGGCCATGGGAGAGGGATGGCAC
AATTACCACCACGTTTTCCCCTGGGACTACAAGACGGGCGAGTTTGGCAA
CTACAGCCTCAACATCACCACCGGCTTCATCGACTTTTGCGCCTGGCTAG
GCCTGGCCAAAGGACGTAAATCGGTATCCCCTGACATGGTCTTGAGGAGA
GCCAAGAAATGCGGCGATGGAACTCGCTTCCTGGACGACGACCATGCCCA
CAAGGATCCGGTGTGGGGCTTCGGGGACAAGGACATTCCCCGAGAGGATA
TCGTGGAGCTGGCCAAGATGCAGAACGCAAGCTTTCTAGACCAT
BO13666.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-RA | 1263 | CG9743-PA | 1..1260 | 17..1276 | 6300 | 100 | Plus |
| Desat1-RD | 1152 | CG5887-PD | 872..987 | 978..1093 | 310 | 84.5 | Plus |
| Desat1-RB | 1152 | CG5887-PB | 872..987 | 978..1093 | 310 | 84.5 | Plus |
| Desat1-RD | 1152 | CG5887-PD | 481..555 | 587..661 | 225 | 86.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-RA | 1733 | CG9743-RA | 192..1453 | 15..1276 | 6310 | 100 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 979..1094 | 978..1093 | 310 | 84.5 | Plus |
| Desat1-RB | 1978 | CG5887-RB | 1023..1138 | 978..1093 | 310 | 84.5 | Plus |
| Desat1-RD | 1934 | CG5887-RD | 588..662 | 587..661 | 225 | 86.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30198494..30198894 | 416..16 | 2005 | 100 | Minus |
| 3R | 32079331 | 3R | 30197096..30197491 | 940..545 | 1980 | 100 | Minus |
| 3R | 32079331 | 3R | 30196864..30197041 | 1117..940 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 30196640..30196800 | 1276..1116 | 805 | 100 | Minus |
| 3R | 32079331 | 3R | 30197551..30197682 | 547..416 | 660 | 100 | Minus |
| 3R | 32079331 | 3R | 12446661..12446776 | 978..1093 | 310 | 84.5 | Plus |
| 3R | 32079331 | 3R | 30186150..30186255 | 1072..967 | 305 | 85.8 | Minus |
| 3R | 32079331 | 3R | 12446148..12446222 | 587..661 | 225 | 86.7 | Plus |
| 3R | 32079331 | 3R | 13283516..13283602 | 977..1063 | 225 | 83.9 | Plus |
| 3R | 32079331 | 3R | 30186709..30186785 | 660..584 | 205 | 84.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:00:06 has no hits.
BO13666.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:10 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 1..1263 | 17..1280 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:11 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 186..1457 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:30:58 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 194..1453 | 17..1278 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:11 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 186..1457 | 9..1283 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:01:07 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9743-RA | 194..1453 | 17..1278 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:01:07 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30196638..30196800 | 1116..1278 | 98 | <- | Minus |
| 3R | 30196866..30197041 | 940..1115 | 100 | <- | Minus |
| 3R | 30197097..30197488 | 548..939 | 100 | <- | Minus |
| 3R | 30197551..30197681 | 417..547 | 100 | <- | Minus |
| 3R | 30198494..30198893 | 17..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:30:58 Download gff for
BO13666.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26022360..26022522 | 1116..1278 | 98 | <- | Minus |
| arm_3R | 26022588..26022763 | 940..1115 | 100 | <- | Minus |
| arm_3R | 26022819..26023210 | 548..939 | 100 | <- | Minus |
| arm_3R | 26023273..26023403 | 417..547 | 100 | <- | Minus |
| arm_3R | 26024216..26024615 | 17..416 | 100 | | Minus |
BO13666.pep Sequence
Translation from 16 to 1294
> BO13666.pep
MCLSSPIPGQKQATSVGHCNGSCSLDRNGNRSAAIVPNGGELKHRGHATD
ATSHTLVKDDDNLGYKEENAVYKEQQLLQQQDQTLKEAEQVEEEEEYHPQ
IRWPDLGAQAFLHIGALYGLYQLFYANFYTFLWVVVTVWVSGIGITAGAH
RLWSHKSYTASLPLRILLAFAFSIAGQRDAYTWALDHRIHHKFSETDADP
HNAKRGFFFAHVGWLFLTPHPKVVAKRKVIDMSDLEADAVCMFQRKYYIP
LFALCSIILPVAVPWYFWNEDLWMSFWINFNMRFTWTLNVAFFVNSVAHM
YGNKPYDKNLMSTEAPIVSLLAMGEGWHNYHHVFPWDYKTGEFGNYSLNI
TTGFIDFCAWLGLAKGRKSVSPDMVLRRAKKCGDGTRFLDDDHAHKDPVW
GFGDKDIPREDIVELAKMQNASFLDH
BO13666.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9743-PA | 420 | CG9743-PA | 1..420 | 1..420 | 2308 | 100 | Plus |
| Desat1-PD | 383 | CG5887-PD | 54..372 | 85..412 | 861 | 49.5 | Plus |
| Desat1-PB | 383 | CG5887-PB | 54..372 | 85..412 | 861 | 49.5 | Plus |
| Desat1-PE | 383 | CG5887-PE | 54..372 | 85..412 | 861 | 49.5 | Plus |
| Desat1-PC | 383 | CG5887-PC | 54..372 | 85..412 | 861 | 49.5 | Plus |
