Clone Sequence Records
BO13667.3prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13667.3prime
ATGGTCTAGAAAGCTTGCATAACGCCCATAGTTGGGCCCGAACCGGGCTC
CATCTCCGCCCAACTCGTCCAGGGCACCCATGGCACTCAGTTTCTGCAGC
CAGGCGGCATTAGAGTTGCCGTTGGACACGCGTGGATTGTTGATGTTGCT
GCTGCTGCTGCTGCCACCGGTGGCCTCATTGTGGAGACGCAGCTGTGGGT
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTGGGTCCTCATTGCTC
AACTCCAAAATCTGCAGCATCAGTTCACGCAACTTGTCCAAATCGTCGCC
ATGCGACCTTGTCGGCAGGTAACGGCCGTCGACCAGATGCGGTGGGACGA
CCAGGAGCAGCACCGTCATCCAAACCAAGAGCCACCTGTGTCCACTTCCA
CAGCCAATTCCAGTTCCGTGACTCCGTGGCACTCCCATGTCGACTGATAA
CT
BO13667.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7105-PA | 423 | Proct-RA | 1..420 | 438..19 | 2100 | 100 | Minus |
CG15478-PA | 1659 | CG15478-RA | 561..587 | 164..138 | 135 | 100 | Minus |
CG17265-PA | 1824 | CG17265-RA | 1524..1550 | 164..138 | 135 | 100 | Minus |
CG1770-PB | 3546 | HDAC4-RB | 171..197 | 164..138 | 135 | 100 | Minus |
CG1770-PC | 3600 | HDAC4-RC | 384..410 | 164..138 | 135 | 100 | Minus |
CG1770-PA | 3747 | HDAC4-RA | 384..410 | 164..138 | 135 | 100 | Minus |
CG32133-PA | 6885 | CG32133-RA | 750..776 | 164..138 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..621 | 438..19 | 2100 | 100 | Minus |
Proc-RA | 1977 | CG7105-RA | 293..712 | 438..19 | 2100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865907..7866154 | 19..266 | 1240 | 100 | Plus |
2L | 23513712 | 2L | 7870267..7870443 | 262..438 | 885 | 100 | Plus |
Blast to na_te.dros performed 2015-02-06 12:18:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 215..130 | 171 | 67.8 | Minus |
BO13667.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:43 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:57 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7105-PA | 1..423 | 15..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:14 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..722 | 8..438 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:01 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 293..722 | 8..438 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:01 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7865897..7866149 | 8..261 | 98 | <- | Plus |
2L | 7870267..7870443 | 262..438 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:14 Download gff for
BO13667.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7865897..7866149 | 8..261 | 98 | <- | Plus |
arm_2L | 7870267..7870443 | 262..438 | 100 | | Plus |
BO13667.5prime Sequence
452 bp (451 high quality bases) assembled on 2006-05-08
> BO13667.5prime
GAAGTTATCACTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATGCAAGCTTTCTAGA
CC
BO13667.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7105-PA | 423 | Proct-RA | 1..420 | 17..436 | 2100 | 100 | Plus |
CG15478-PA | 1659 | CG15478-RA | 561..587 | 291..317 | 135 | 100 | Plus |
CG17265-PA | 1824 | CG17265-RA | 1524..1550 | 291..317 | 135 | 100 | Plus |
CG1770-PB | 3546 | HDAC4-RB | 171..197 | 291..317 | 135 | 100 | Plus |
CG1770-PC | 3600 | HDAC4-RC | 384..410 | 291..317 | 135 | 100 | Plus |
CG1770-PA | 3747 | HDAC4-RA | 384..410 | 291..317 | 135 | 100 | Plus |
CG32133-PA | 6885 | CG32133-RA | 750..776 | 291..317 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..621 | 17..436 | 2100 | 100 | Plus |
Proc-RA | 1977 | CG7105-RA | 293..712 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865907..7866154 | 436..189 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870443 | 193..17 | 885 | 100 | Minus |
Blast to na_te.dros performed 2015-02-04 03:00:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 240..325 | 171 | 67.8 | Plus |
BO13667.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:44 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:59 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7105-PA | 1..423 | 17..440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:41 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 288..722 | 9..447 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:04 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 288..722 | 9..447 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:04 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7865897..7866149 | 194..447 | 98 | <- | Minus |
2L | 7870267..7870448 | 9..193 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:41 Download gff for
BO13667.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7870267..7870448 | 9..193 | 97 | | Minus |
arm_2L | 7865897..7866149 | 194..447 | 98 | <- | Minus |
BO13667.complete Sequence
454 bp assembled on 2006-10-11
GenBank Submission: FJ632894
> BO13667.complete
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATGCAAGCTTTCTAGA
CCAT
BO13667.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 423 | CG7105-PB | 1..420 | 17..436 | 2100 | 100 | Plus |
Proc-RA | 423 | CG7105-PA | 1..420 | 17..436 | 2100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-RB | 1886 | CG7105-RB | 202..621 | 17..436 | 2100 | 100 | Plus |
Proc-RA | 1977 | CG7105-RA | 293..712 | 17..436 | 2100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7865907..7866154 | 436..189 | 1240 | 100 | Minus |
2L | 23513712 | 2L | 7870267..7870443 | 193..17 | 885 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 02:00:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2587..2673 | 240..325 | 171 | 67.8 | Plus |
BO13667.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:15 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smr-RC | 589..605 | 221..238 | 94 | -> | Plus |
Smr-RC | 751..767 | 239..255 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:07 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..722 | 17..447 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:01 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proct-RA | 293..712 | 17..438 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:16 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Smr-RC | 1947..1963 | 221..238 | 94 | -> | Plus |
Smr-RC | 2109..2125 | 239..255 | 100 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:47 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Proc-RA | 293..712 | 17..438 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:47 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7865905..7866149 | 194..438 | 99 | <- | Minus |
2L | 7870267..7870443 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:01 Download gff for
BO13667.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7865905..7866149 | 194..438 | 99 | <- | Minus |
arm_2L | 7870267..7870443 | 17..193 | 100 | | Minus |
BO13667.pep Sequence
Translation from 16 to 454
> BO13667.pep
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRYASFLDH
BO13667.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Proc-PB | 140 | CG7105-PB | 1..140 | 1..140 | 749 | 100 | Plus |
Proc-PA | 140 | CG7105-PA | 1..140 | 1..140 | 749 | 100 | Plus |