Clone BO13667 Report

Search the DGRC for BO13667

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptProct-RA
Protein status:BO13667.pep: validated full length
Sequenced Size:454

Clone Sequence Records

BO13667.3prime Sequence

452 bp (451 high quality bases) assembled on 2006-05-08

> BO13667.3prime
ATGGTCTAGAAAGCTTGCATAACGCCCATAGTTGGGCCCGAACCGGGCTC
CATCTCCGCCCAACTCGTCCAGGGCACCCATGGCACTCAGTTTCTGCAGC
CAGGCGGCATTAGAGTTGCCGTTGGACACGCGTGGATTGTTGATGTTGCT
GCTGCTGCTGCTGCCACCGGTGGCCTCATTGTGGAGACGCAGCTGTGGGT
GTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTGGGTCCTCATTGCTC
AACTCCAAAATCTGCAGCATCAGTTCACGCAACTTGTCCAAATCGTCGCC
ATGCGACCTTGTCGGCAGGTAACGGCCGTCGACCAGATGCGGTGGGACGA
CCAGGAGCAGCACCGTCATCCAAACCAAGAGCCACCTGTGTCCACTTCCA
CAGCCAATTCCAGTTCCGTGACTCCGTGGCACTCCCATGTCGACTGATAA
CT

BO13667.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7105-PA 423 Proct-RA 1..420 438..19 2100 100 Minus
CG15478-PA 1659 CG15478-RA 561..587 164..138 135 100 Minus
CG17265-PA 1824 CG17265-RA 1524..1550 164..138 135 100 Minus
CG1770-PB 3546 HDAC4-RB 171..197 164..138 135 100 Minus
CG1770-PC 3600 HDAC4-RC 384..410 164..138 135 100 Minus
CG1770-PA 3747 HDAC4-RA 384..410 164..138 135 100 Minus
CG32133-PA 6885 CG32133-RA 750..776 164..138 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..621 438..19 2100 100 Minus
Proc-RA 1977 CG7105-RA 293..712 438..19 2100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:18:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865907..7866154 19..266 1240 100 Plus
2L 23513712 2L 7870267..7870443 262..438 885 100 Plus
Blast to na_te.dros performed 2015-02-06 12:18:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 215..130 171 67.8 Minus

BO13667.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:43 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
Proct-PA 1..423 15..438 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:57 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7105-PA 1..423 15..438 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 06:59:14 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..722 8..438 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:40:01 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 293..722 8..438 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:40:01 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7865897..7866149 8..261 98 <- Plus
2L 7870267..7870443 262..438 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 06:59:14 Download gff for BO13667.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7865897..7866149 8..261 98 <- Plus
arm_2L 7870267..7870443 262..438 100   Plus

BO13667.5prime Sequence

452 bp (451 high quality bases) assembled on 2006-05-08

> BO13667.5prime
GAAGTTATCACTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATGCAAGCTTTCTAGA
CC

BO13667.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG7105-PA 423 Proct-RA 1..420 17..436 2100 100 Plus
CG15478-PA 1659 CG15478-RA 561..587 291..317 135 100 Plus
CG17265-PA 1824 CG17265-RA 1524..1550 291..317 135 100 Plus
CG1770-PB 3546 HDAC4-RB 171..197 291..317 135 100 Plus
CG1770-PC 3600 HDAC4-RC 384..410 291..317 135 100 Plus
CG1770-PA 3747 HDAC4-RA 384..410 291..317 135 100 Plus
CG32133-PA 6885 CG32133-RA 750..776 291..317 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 03:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..621 17..436 2100 100 Plus
Proc-RA 1977 CG7105-RA 293..712 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 03:00:02
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865907..7866154 436..189 1240 100 Minus
2L 23513712 2L 7870267..7870443 193..17 885 100 Minus
Blast to na_te.dros performed 2015-02-04 03:00:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 240..325 171 67.8 Plus

BO13667.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:44 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
Proct-PA 1..423 17..440 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:57:59 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7105-PA 1..423 17..440 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 20:49:41 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 288..722 9..447 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:26:04 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 288..722 9..447 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:26:04 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7865897..7866149 194..447 98 <- Minus
2L 7870267..7870448 9..193 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 20:49:41 Download gff for BO13667.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7870267..7870448 9..193 97   Minus
arm_2L 7865897..7866149 194..447 98 <- Minus

BO13667.complete Sequence

454 bp assembled on 2006-10-11

GenBank Submission: FJ632894

> BO13667.complete
GAAGTTATCAGTCGACATGGGAGTGCCACGGAGTCACGGAACTGGAATTG
GCTGTGGAAGTGGACACAGGTGGCTCTTGGTTTGGATGACGGTGCTGCTC
CTGGTCGTCCCACCGCATCTGGTCGACGGCCGTTACCTGCCGACAAGGTC
GCATGGCGACGATTTGGACAAGTTGCGTGAACTGATGCTGCAGATTTTGG
AGTTGAGCAATGAGGACCCACAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACACCCACAGCTGCGTCTCCACAATGAGGCCACCGGTGGCAGCAGCAG
CAGCAGCAACATCAACAATCCACGCGTGTCCAACGGCAACTCTAATGCCG
CCTGGCTGCAGAAACTGAGTGCCATGGGTGCCCTGGACGAGTTGGGCGGA
GATGGAGCCCGGTTCGGGCCCAACTATGGGCGTTATGCAAGCTTTCTAGA
CCAT

BO13667.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 02:00:07
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 423 CG7105-PB 1..420 17..436 2100 100 Plus
Proc-RA 423 CG7105-PA 1..420 17..436 2100 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:00:08
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-RB 1886 CG7105-RB 202..621 17..436 2100 100 Plus
Proc-RA 1977 CG7105-RA 293..712 17..436 2100 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 02:00:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7865907..7866154 436..189 1240 100 Minus
2L 23513712 2L 7870267..7870443 193..17 885 100 Minus
Blast to na_te.dros performed 2014-11-27 02:00:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2587..2673 240..325 171 67.8 Plus

BO13667.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:15 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
Smr-RC 589..605 221..238 94 -> Plus
Smr-RC 751..767 239..255 100 == Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:03:07 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..722 17..447 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:07:01 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
Proct-RA 293..712 17..438 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:16 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
Smr-RC 1947..1963 221..238 94 -> Plus
Smr-RC 2109..2125 239..255 100 == Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:35:47 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
Proc-RA 293..712 17..438 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:35:47 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7865905..7866149 194..438 99 <- Minus
2L 7870267..7870443 17..193 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:07:01 Download gff for BO13667.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7865905..7866149 194..438 99 <- Minus
arm_2L 7870267..7870443 17..193 100   Minus

BO13667.pep Sequence

Translation from 16 to 454

> BO13667.pep
MGVPRSHGTGIGCGSGHRWLLVWMTVLLLVVPPHLVDGRYLPTRSHGDDL
DKLRELMLQILELSNEDPQQQQQQQQQQQHPQLRLHNEATGGSSSSSNIN
NPRVSNGNSNAAWLQKLSAMGALDELGGDGARFGPNYGRYASFLDH

BO13667.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
Proc-PB 140 CG7105-PB 1..140 1..140 749 100 Plus
Proc-PA 140 CG7105-PA 1..140 1..140 749 100 Plus