Clone Sequence Records
BO13668.3prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-08
> BO13668.3prime
ATGGTCTAGAAAGCTTGCAACACAGGACTGCCAAGCGAGGCCACCACAGG
CCATGCTCACAATCACGTAAACGATGAAGGTTATCACCAGACCCACCACC
ACGTAGACGCGGATGTTCTTCCAAAACATTTGACGAGCCAAATTTCGGGA
GGCCTTACGGAATGCAACGGAATTATTGCTCAAGTTTTCGGTCTTGTTGA
CGAGCAGCTCTAGTTTCTCGCCGCGATCCCGCAAGCTGTCAATATTCTTA
ACCATAATGTCTTTAAGCTCGTCAATCTGACCATGTACTCGCGAAATGGT
GTCCACCTCCCGGGACTGACTGAAATAGACCATCTGCTGGGCCAGGATCT
TGGAGAACTCGGTGTTCATGGAGTAGGCGATGGCGGTGGCCACCTGTAGG
CCGTAAGTCTGGATAAACTTCTGCTTGATATCCGCCAAGAAGAGGAAGGC
CCGCGACCGTTCGAACTCGTTGTCGGTGATGCACATGTAGACCAGTTTGT
TCTCGCAGGTGTAGTGGATCAGGTAGTCTCCGTGTGTGTAGGTCATCTTG
TGGTTATGCACCCCGATCCGTCCGATTATGTGCTCCGTCACTTCGGCAAA
GTTGCCGACGCACTCCGCAAACTTCGCCAGCACTGTGGTGCCCCGCGATA
TCACACTATATAGTATCGGCATGTCGACTGATAACT
BO13668.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1599-PA | 657 | CG1599-RA | 1..654 | 672..19 | 3270 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:39:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 673..19 | 3275 | 100 | Minus |
Vamp7-RA | 1090 | CG1599-RA | 319..973 | 673..19 | 3275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 240..468 | 1145 | 100 | Plus |
2R | 25286936 | 2R | 9841846..9842051 | 468..673 | 1030 | 100 | Plus |
2R | 25286936 | 2R | 9841197..9841349 | 19..171 | 765 | 100 | Plus |
2R | 25286936 | 2R | 9841408..9841476 | 172..240 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 19:39:04 has no hits.
BO13668.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:45 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:00 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 1..657 | 18..672 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:21 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 10..682 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:28 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 10..682 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:28 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841184..9841349 | 10..171 | 97 | <- | Plus |
2R | 9841408..9841475 | 172..239 | 100 | <- | Plus |
2R | 9841540..9841768 | 240..468 | 100 | <- | Plus |
2R | 9841847..9842062 | 469..682 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:21 Download gff for
BO13668.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728689..5728854 | 10..171 | 97 | <- | Plus |
arm_2R | 5728913..5728980 | 172..239 | 100 | <- | Plus |
arm_2R | 5729045..5729273 | 240..468 | 100 | <- | Plus |
arm_2R | 5729352..5729567 | 469..682 | 98 | | Plus |
BO13668.5prime Sequence
686 bp (685 high quality bases) assembled on 2006-05-08
> BO13668.5prime
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACC
BO13668.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1599-PA | 657 | CG1599-RA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:58:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 16..670 | 3275 | 100 | Plus |
Vamp7-RA | 1090 | CG1599-RA | 319..973 | 16..670 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:58:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 449..221 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 9841846..9842051 | 221..16 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 9841197..9841349 | 670..518 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 517..449 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:58:20 has no hits.
BO13668.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:46 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:02 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-PA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:18 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 7..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:12 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 308..986 | 7..679 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:12 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841184..9841349 | 518..679 | 97 | <- | Minus |
2R | 9841408..9841475 | 450..517 | 100 | <- | Minus |
2R | 9841540..9841768 | 221..449 | 100 | <- | Minus |
2R | 9841847..9842062 | 7..220 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:18 Download gff for
BO13668.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728913..5728980 | 450..517 | 100 | <- | Minus |
arm_2R | 5728689..5728854 | 518..679 | 97 | <- | Minus |
arm_2R | 5729045..5729273 | 221..449 | 100 | <- | Minus |
arm_2R | 5729352..5729567 | 7..220 | 98 | | Minus |
BO13668.complete Sequence
688 bp assembled on 2006-10-11
GenBank Submission: FJ632895
> BO13668.complete
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACCAT
BO13668.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 657 | CG1599-PC | 1..654 | 17..670 | 3270 | 100 | Plus |
Vamp7-RA | 657 | CG1599-PA | 1..654 | 17..670 | 3270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-RC | 1148 | CG1599-RC | 377..1031 | 16..670 | 3275 | 100 | Plus |
Vamp7-RA | 1090 | CG1599-RA | 319..973 | 16..670 | 3275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9841540..9841768 | 449..221 | 1145 | 100 | Minus |
2R | 25286936 | 2R | 9841846..9842051 | 221..16 | 1030 | 100 | Minus |
2R | 25286936 | 2R | 9841197..9841349 | 670..518 | 765 | 100 | Minus |
2R | 25286936 | 2R | 9841408..9841476 | 517..449 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:58 has no hits.
BO13668.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:17 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 1..657 | 17..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:12 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 319..997 | 7..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:00 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 320..973 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:17 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1599-RA | 319..997 | 7..679 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:09 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vamp7-RA | 320..973 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:09 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9841540..9841768 | 221..449 | 100 | <- | Minus |
2R | 9841847..9842050 | 17..220 | 100 | | Minus |
2R | 9841195..9841349 | 518..672 | 98 | <- | Minus |
2R | 9841408..9841475 | 450..517 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:00 Download gff for
BO13668.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5728700..5728854 | 518..672 | 98 | <- | Minus |
arm_2R | 5728913..5728980 | 450..517 | 100 | <- | Minus |
arm_2R | 5729045..5729273 | 221..449 | 100 | <- | Minus |
arm_2R | 5729352..5729555 | 17..220 | 100 | | Minus |
BO13668.pep Sequence
Translation from 16 to 688
> BO13668.pep
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCVASFLDH
BO13668.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vamp7-PC | 218 | CG1599-PC | 1..218 | 1..218 | 1118 | 100 | Plus |
Vamp7-PA | 218 | CG1599-PA | 1..218 | 1..218 | 1118 | 100 | Plus |
Sec22-PA | 211 | CG7359-PA | 43..207 | 35..202 | 191 | 28.4 | Plus |
Sec22-PB | 213 | CG7359-PB | 45..209 | 35..202 | 191 | 28.4 | Plus |