Clone BO13668 Report

Search the DGRC for BO13668

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:68
Vector:pDNR-Dual
Associated Gene/TranscriptCG1599-RA
Protein status:BO13668.pep: validated full length
Sequenced Size:688

Clone Sequence Records

BO13668.3prime Sequence

686 bp (685 high quality bases) assembled on 2006-05-08

> BO13668.3prime
ATGGTCTAGAAAGCTTGCAACACAGGACTGCCAAGCGAGGCCACCACAGG
CCATGCTCACAATCACGTAAACGATGAAGGTTATCACCAGACCCACCACC
ACGTAGACGCGGATGTTCTTCCAAAACATTTGACGAGCCAAATTTCGGGA
GGCCTTACGGAATGCAACGGAATTATTGCTCAAGTTTTCGGTCTTGTTGA
CGAGCAGCTCTAGTTTCTCGCCGCGATCCCGCAAGCTGTCAATATTCTTA
ACCATAATGTCTTTAAGCTCGTCAATCTGACCATGTACTCGCGAAATGGT
GTCCACCTCCCGGGACTGACTGAAATAGACCATCTGCTGGGCCAGGATCT
TGGAGAACTCGGTGTTCATGGAGTAGGCGATGGCGGTGGCCACCTGTAGG
CCGTAAGTCTGGATAAACTTCTGCTTGATATCCGCCAAGAAGAGGAAGGC
CCGCGACCGTTCGAACTCGTTGTCGGTGATGCACATGTAGACCAGTTTGT
TCTCGCAGGTGTAGTGGATCAGGTAGTCTCCGTGTGTGTAGGTCATCTTG
TGGTTATGCACCCCGATCCGTCCGATTATGTGCTCCGTCACTTCGGCAAA
GTTGCCGACGCACTCCGCAAACTTCGCCAGCACTGTGGTGCCCCGCGATA
TCACACTATATAGTATCGGCATGTCGACTGATAACT

BO13668.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG1599-PA 657 CG1599-RA 1..654 672..19 3270 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 19:39:07
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..1031 673..19 3275 100 Minus
Vamp7-RA 1090 CG1599-RA 319..973 673..19 3275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 19:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 240..468 1145 100 Plus
2R 25286936 2R 9841846..9842051 468..673 1030 100 Plus
2R 25286936 2R 9841197..9841349 19..171 765 100 Plus
2R 25286936 2R 9841408..9841476 172..240 345 100 Plus
Blast to na_te.dros performed on 2015-02-02 19:39:04 has no hits.

BO13668.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:45 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:00 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 1..657 18..672 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:22:21 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 10..682 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:10:28 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 10..682 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:10:28 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 9841184..9841349 10..171 97 <- Plus
2R 9841408..9841475 172..239 100 <- Plus
2R 9841540..9841768 240..468 100 <- Plus
2R 9841847..9842062 469..682 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:22:21 Download gff for BO13668.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728689..5728854 10..171 97 <- Plus
arm_2R 5728913..5728980 172..239 100 <- Plus
arm_2R 5729045..5729273 240..468 100 <- Plus
arm_2R 5729352..5729567 469..682 98   Plus

BO13668.5prime Sequence

686 bp (685 high quality bases) assembled on 2006-05-08

> BO13668.5prime
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACC

BO13668.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG1599-PA 657 CG1599-RA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:58:22
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..1031 16..670 3275 100 Plus
Vamp7-RA 1090 CG1599-RA 319..973 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:58:17
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 449..221 1145 100 Minus
2R 25286936 2R 9841846..9842051 221..16 1030 100 Minus
2R 25286936 2R 9841197..9841349 670..518 765 100 Minus
2R 25286936 2R 9841408..9841476 517..449 345 100 Minus
Blast to na_te.dros performed on 2015-02-09 23:58:20 has no hits.

BO13668.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:46 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:02 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1599-PA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:31:18 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 7..679 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 01:00:12 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 308..986 7..679 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 01:00:12 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 9841184..9841349 518..679 97 <- Minus
2R 9841408..9841475 450..517 100 <- Minus
2R 9841540..9841768 221..449 100 <- Minus
2R 9841847..9842062 7..220 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:31:18 Download gff for BO13668.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728913..5728980 450..517 100 <- Minus
arm_2R 5728689..5728854 518..679 97 <- Minus
arm_2R 5729045..5729273 221..449 100 <- Minus
arm_2R 5729352..5729567 7..220 98   Minus

BO13668.complete Sequence

688 bp assembled on 2006-10-11

GenBank Submission: FJ632895

> BO13668.complete
GAAGTTATCAGTCGACATGCCGATACTATATAGTGTGATATCGCGGGGCA
CCACAGTGCTGGCGAAGTTTGCGGAGTGCGTCGGCAACTTTGCCGAAGTG
ACGGAGCACATAATCGGACGGATCGGGGTGCATAACCACAAGATGACCTA
CACACACGGAGACTACCTGATCCACTACACCTGCGAGAACAAACTGGTCT
ACATGTGCATCACCGACAACGAGTTCGAACGGTCGCGGGCCTTCCTCTTC
TTGGCGGATATCAAGCAGAAGTTTATCCAGACTTACGGCCTACAGGTGGC
CACCGCCATCGCCTACTCCATGAACACCGAGTTCTCCAAGATCCTGGCCC
AGCAGATGGTCTATTTCAGTCAGTCCCGGGAGGTGGACACCATTTCGCGA
GTACATGGTCAGATTGACGAGCTTAAAGACATTATGGTTAAGAATATTGA
CAGCTTGCGGGATCGCGGCGAGAAACTAGAGCTGCTCGTCAACAAGACCG
AAAACTTGAGCAATAATTCCGTTGCATTCCGTAAGGCCTCCCGAAATTTG
GCTCGTCAAATGTTTTGGAAGAACATCCGCGTCTACGTGGTGGTGGGTCT
GGTGATAACCTTCATCGTTTACGTGATTGTGAGCATGGCCTGTGGTGGCC
TCGCTTGGCAGTCCTGTGTTGCAAGCTTTCTAGACCAT

BO13668.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:59
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 657 CG1599-PC 1..654 17..670 3270 100 Plus
Vamp7-RA 657 CG1599-PA 1..654 17..670 3270 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-RC 1148 CG1599-RC 377..1031 16..670 3275 100 Plus
Vamp7-RA 1090 CG1599-RA 319..973 16..670 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9841540..9841768 449..221 1145 100 Minus
2R 25286936 2R 9841846..9842051 221..16 1030 100 Minus
2R 25286936 2R 9841197..9841349 670..518 765 100 Minus
2R 25286936 2R 9841408..9841476 517..449 345 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:36:58 has no hits.

BO13668.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:17 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 1..657 17..671 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:12 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 319..997 7..679 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:31:00 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 320..973 17..672 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:17 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
CG1599-RA 319..997 7..679 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:49:09 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
Vamp7-RA 320..973 17..672 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:49:09 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9841540..9841768 221..449 100 <- Minus
2R 9841847..9842050 17..220 100   Minus
2R 9841195..9841349 518..672 98 <- Minus
2R 9841408..9841475 450..517 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:31:00 Download gff for BO13668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5728700..5728854 518..672 98 <- Minus
arm_2R 5728913..5728980 450..517 100 <- Minus
arm_2R 5729045..5729273 221..449 100 <- Minus
arm_2R 5729352..5729555 17..220 100   Minus

BO13668.pep Sequence

Translation from 16 to 688

> BO13668.pep
MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDY
LIHYTCENKLVYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAY
SMNTEFSKILAQQMVYFSQSREVDTISRVHGQIDELKDIMVKNIDSLRDR
GEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIRVYVVVGLVITFI
VYVIVSMACGGLAWQSCVASFLDH

BO13668.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Vamp7-PC 218 CG1599-PC 1..218 1..218 1118 100 Plus
Vamp7-PA 218 CG1599-PA 1..218 1..218 1118 100 Plus
Sec22-PA 211 CG7359-PA 43..207 35..202 191 28.4 Plus
Sec22-PB 213 CG7359-PB 45..209 35..202 191 28.4 Plus