Clone Sequence Records
BO13669.5prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO13669.5prime
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGGCAAGCTTTCTAGACC
BO13669.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17041-PA | 396 | CG17041-RA | 1..393 | 17..409 | 1965 | 100 | Plus |
CG17041-PB | 396 | CG17041-RB | 1..393 | 17..409 | 1965 | 100 | Plus |
CG17041-PC | 396 | CG17041-RC | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1280 | 15..409 | 1975 | 100 | Plus |
CG42319-RC | 890 | CG42319-RC | 310..704 | 15..409 | 1975 | 100 | Plus |
CG42319-RB | 1043 | CG42319-RB | 250..644 | 15..409 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 107..281 | 875 | 100 | Plus |
2R | 25286936 | 2R | 13263797..13263928 | 278..409 | 660 | 100 | Plus |
2R | 25286936 | 2R | 13262906..13262997 | 16..107 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:45:40 has no hits.
BO13669.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:48 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:04 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 17..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:14 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..644 | 15..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:37 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..644 | 15..409 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:18:37 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13262906..13262997 | 16..107 | 100 | -> | Plus |
2R | 13263493..13263665 | 108..280 | 100 | -> | Plus |
2R | 13263800..13263928 | 281..409 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:14 Download gff for
BO13669.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9150411..9150502 | 16..107 | 100 | -> | Plus |
arm_2R | 9150998..9151170 | 108..280 | 100 | -> | Plus |
arm_2R | 9151305..9151433 | 281..409 | 100 | | Plus |
BO13669.3prime Sequence
425 bp (424 high quality bases) assembled on 2006-05-08
> BO13669.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGGAGGCGCTGGGCAGGGCCATCA
GCATGTTCTCAATGGTGTTCGTGCGCAGCTCCTGGTTGTCGCCCACCTCC
GCAAAGAATCGCCGGATGTTCCGGATGATGCGATGGTGGGGCAGCTCCTG
CTCCTCCTCGTCGGACGACTCGTCCTCGCTGAGCTCAATGACCACCTCGT
TGCCCTCGTCGTCCAGCTGCGTTTTCGTTTTCTTTTTCTTGGGCTTCGGC
GGCTCCGGAGGGTCTTGCCACATTATCGGATGCCAACAACGCGAGCCAAG
CAGGGGGGTTGGGGTGAATTCACTGGGCGGCGGCAAAGGCTTTGGAACCC
GCATCACAATCGACTTCTCCTCCCCAGCCTCAAACTGGCCCATGGGATCG
TCCTCCTCCATGTCGACTGATAACT
BO13669.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17041-PA | 396 | CG17041-RA | 1..393 | 411..19 | 1965 | 100 | Minus |
CG17041-PB | 396 | CG17041-RB | 1..393 | 411..19 | 1965 | 100 | Minus |
CG17041-PC | 396 | CG17041-RC | 1..393 | 411..19 | 1965 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1280 | 413..19 | 1975 | 100 | Minus |
CG42319-RC | 890 | CG42319-RC | 310..704 | 413..19 | 1975 | 100 | Minus |
CG42319-RB | 1043 | CG42319-RB | 250..644 | 413..19 | 1975 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 321..147 | 875 | 100 | Minus |
2R | 25286936 | 2R | 13263797..13263928 | 150..19 | 660 | 100 | Minus |
2R | 25286936 | 2R | 13262906..13262997 | 412..321 | 460 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:21:39 has no hits.
BO13669.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:47 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 16..411 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:03 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17041-PC | 1..396 | 16..411 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:26 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..644 | 19..413 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:51 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 250..644 | 19..413 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:51 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13262906..13262997 | 321..412 | 100 | -> | Minus |
2R | 13263493..13263665 | 148..320 | 100 | -> | Minus |
2R | 13263800..13263928 | 19..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:26 Download gff for
BO13669.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9150411..9150502 | 321..412 | 100 | -> | Minus |
arm_2R | 9150998..9151170 | 148..320 | 100 | -> | Minus |
arm_2R | 9151305..9151433 | 19..147 | 100 | | Minus |
BO13669.complete Sequence
427 bp assembled on 2006-10-11
GenBank Submission: FJ632896
> BO13669.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGGCAAGCTTTCTAGACCAT
BO13669.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 756 | CG42319-PD | 359..753 | 15..409 | 1975 | 100 | Plus |
CG42319-RC | 396 | CG42319-PC | 1..393 | 17..409 | 1965 | 100 | Plus |
CG42319-RB | 396 | CG42319-PB | 1..393 | 17..409 | 1965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-RD | 1466 | CG42319-RD | 886..1280 | 15..409 | 1975 | 100 | Plus |
CG42319-RC | 890 | CG42319-RC | 310..704 | 15..409 | 1975 | 100 | Plus |
CG42319-RB | 1043 | CG42319-RB | 250..644 | 15..409 | 1975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13263492..13263666 | 107..281 | 875 | 100 | Plus |
2R | 25286936 | 2R | 13263797..13263928 | 278..409 | 660 | 100 | Plus |
2R | 25286936 | 2R | 13262906..13262997 | 16..107 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:38:23 has no hits.
BO13669.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:40 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RD | 359..756 | 15..412 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:22 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RC | 266..660 | 15..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:11 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 252..644 | 17..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:40 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RC | 266..660 | 15..409 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:08 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42319-RB | 252..644 | 17..411 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:08 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13262907..13262997 | 17..107 | 100 | -> | Plus |
2R | 13263493..13263665 | 108..280 | 100 | -> | Plus |
2R | 13263800..13263928 | 281..411 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:11 Download gff for
BO13669.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9150412..9150502 | 17..107 | 100 | -> | Plus |
arm_2R | 9150998..9151170 | 108..280 | 100 | -> | Plus |
arm_2R | 9151305..9151433 | 281..411 | 98 | | Plus |
BO13669.pep Sequence
Translation from 16 to 427
> BO13669.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSRCWHPIMWQD
PPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELPHHRIIRNIR
RFFAEVGDNQELRTNTIENMLMALPSASKAKASFLDH
BO13669.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42319-PC | 131 | CG17041-PC | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PB | 131 | CG17041-PB | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PA | 131 | CG17041-PA | 1..131 | 1..131 | 700 | 100 | Plus |
CG42319-PD | 251 | CG17041-PD | 121..251 | 1..131 | 700 | 100 | Plus |
CG42319-PF | 332 | CG42319-PF | 1..30 | 1..30 | 160 | 100 | Plus |