Clone BO13669 Report

Search the DGRC for BO13669

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:69
Vector:pDNR-Dual
Associated Gene/TranscriptCG42319-RA
Protein status:BO13669.pep: validated full length
Sequenced Size:427

Clone Sequence Records

BO13669.5prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO13669.5prime
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGGCAAGCTTTCTAGACC

BO13669.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG17041-PA 396 CG17041-RA 1..393 17..409 1965 100 Plus
CG17041-PB 396 CG17041-RB 1..393 17..409 1965 100 Plus
CG17041-PC 396 CG17041-RC 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:45:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1280 15..409 1975 100 Plus
CG42319-RC 890 CG42319-RC 310..704 15..409 1975 100 Plus
CG42319-RB 1043 CG42319-RB 250..644 15..409 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:45:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 107..281 875 100 Plus
2R 25286936 2R 13263797..13263928 278..409 660 100 Plus
2R 25286936 2R 13262906..13262997 16..107 460 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:45:40 has no hits.

BO13669.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:48 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 17..412 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:04 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 17..412 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:42:14 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..644 15..409 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:18:37 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..644 15..409 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:18:37 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13262906..13262997 16..107 100 -> Plus
2R 13263493..13263665 108..280 100 -> Plus
2R 13263800..13263928 281..409 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:42:14 Download gff for BO13669.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9150411..9150502 16..107 100 -> Plus
arm_2R 9150998..9151170 108..280 100 -> Plus
arm_2R 9151305..9151433 281..409 100   Plus

BO13669.3prime Sequence

425 bp (424 high quality bases) assembled on 2006-05-08

> BO13669.3prime
ATGGTCTAGAAAGCTTGCCTTGGCCTTGGAGGCGCTGGGCAGGGCCATCA
GCATGTTCTCAATGGTGTTCGTGCGCAGCTCCTGGTTGTCGCCCACCTCC
GCAAAGAATCGCCGGATGTTCCGGATGATGCGATGGTGGGGCAGCTCCTG
CTCCTCCTCGTCGGACGACTCGTCCTCGCTGAGCTCAATGACCACCTCGT
TGCCCTCGTCGTCCAGCTGCGTTTTCGTTTTCTTTTTCTTGGGCTTCGGC
GGCTCCGGAGGGTCTTGCCACATTATCGGATGCCAACAACGCGAGCCAAG
CAGGGGGGTTGGGGTGAATTCACTGGGCGGCGGCAAAGGCTTTGGAACCC
GCATCACAATCGACTTCTCCTCCCCAGCCTCAAACTGGCCCATGGGATCG
TCCTCCTCCATGTCGACTGATAACT

BO13669.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17041-PA 396 CG17041-RA 1..393 411..19 1965 100 Minus
CG17041-PB 396 CG17041-RB 1..393 411..19 1965 100 Minus
CG17041-PC 396 CG17041-RC 1..393 411..19 1965 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:21:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1280 413..19 1975 100 Minus
CG42319-RC 890 CG42319-RC 310..704 413..19 1975 100 Minus
CG42319-RB 1043 CG42319-RB 250..644 413..19 1975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 321..147 875 100 Minus
2R 25286936 2R 13263797..13263928 150..19 660 100 Minus
2R 25286936 2R 13262906..13262997 412..321 460 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:21:39 has no hits.

BO13669.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:47 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 16..411 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:03 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17041-PC 1..396 16..411 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 22:44:26 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..644 19..413 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:52:51 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 250..644 19..413 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:52:51 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13262906..13262997 321..412 100 -> Minus
2R 13263493..13263665 148..320 100 -> Minus
2R 13263800..13263928 19..147 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 22:44:26 Download gff for BO13669.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9150411..9150502 321..412 100 -> Minus
arm_2R 9150998..9151170 148..320 100 -> Minus
arm_2R 9151305..9151433 19..147 100   Minus

BO13669.complete Sequence

427 bp assembled on 2006-10-11

GenBank Submission: FJ632896

> BO13669.complete
GAAGTTATCAGTCGACATGGAGGAGGACGATCCCATGGGCCAGTTTGAGG
CTGGGGAGGAGAAGTCGATTGTGATGCGGGTTCCAAAGCCTTTGCCGCCG
CCCAGTGAATTCACCCCAACCCCCCTGCTTGGCTCGCGTTGTTGGCATCC
GATAATGTGGCAAGACCCTCCGGAGCCGCCGAAGCCCAAGAAAAAGAAAA
CGAAAACGCAGCTGGACGACGAGGGCAACGAGGTGGTCATTGAGCTCAGC
GAGGACGAGTCGTCCGACGAGGAGGAGCAGGAGCTGCCCCACCATCGCAT
CATCCGGAACATCCGGCGATTCTTTGCGGAGGTGGGCGACAACCAGGAGC
TGCGCACGAACACCATTGAGAACATGCTGATGGCCCTGCCCAGCGCCTCC
AAGGCCAAGGCAAGCTTTCTAGACCAT

BO13669.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 756 CG42319-PD 359..753 15..409 1975 100 Plus
CG42319-RC 396 CG42319-PC 1..393 17..409 1965 100 Plus
CG42319-RB 396 CG42319-PB 1..393 17..409 1965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-RD 1466 CG42319-RD 886..1280 15..409 1975 100 Plus
CG42319-RC 890 CG42319-RC 310..704 15..409 1975 100 Plus
CG42319-RB 1043 CG42319-RB 250..644 15..409 1975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13263492..13263666 107..281 875 100 Plus
2R 25286936 2R 13263797..13263928 278..409 660 100 Plus
2R 25286936 2R 13262906..13262997 16..107 460 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:38:23 has no hits.

BO13669.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:13:40 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RD 359..756 15..412 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:32:22 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RC 266..660 15..409 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:34:11 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 252..644 17..411 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:13:40 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RC 266..660 15..409 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:05:08 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
CG42319-RB 252..644 17..411 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:05:08 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13262907..13262997 17..107 100 -> Plus
2R 13263493..13263665 108..280 100 -> Plus
2R 13263800..13263928 281..411 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:34:11 Download gff for BO13669.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9150412..9150502 17..107 100 -> Plus
arm_2R 9150998..9151170 108..280 100 -> Plus
arm_2R 9151305..9151433 281..411 98   Plus

BO13669.pep Sequence

Translation from 16 to 427

> BO13669.pep
MEEDDPMGQFEAGEEKSIVMRVPKPLPPPSEFTPTPLLGSRCWHPIMWQD
PPEPPKPKKKKTKTQLDDEGNEVVIELSEDESSDEEEQELPHHRIIRNIR
RFFAEVGDNQELRTNTIENMLMALPSASKAKASFLDH

BO13669.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:17:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG42319-PC 131 CG17041-PC 1..131 1..131 700 100 Plus
CG42319-PB 131 CG17041-PB 1..131 1..131 700 100 Plus
CG42319-PA 131 CG17041-PA 1..131 1..131 700 100 Plus
CG42319-PD 251 CG17041-PD 121..251 1..131 700 100 Plus
CG42319-PF 332 CG42319-PF 1..30 1..30 160 100 Plus