Clone Sequence Records
BO13672.3prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-08
> BO13672.3prime
ATGGTCTAGAAAGCTTGCACCACTTGCACCTGCTTCACTGCTTTGCTGCT
CAGCTGTCGGAACGTTTGGGGAAGCCTTTTGCAGCTGGACAACCTCTGTG
CGTGTTGCGAAATCTTGCAGCAGCAACTGACAAAGTTTAACGATGCGTTC
ATCGTGGGCCTTGACCCGCCACTCTTGCACCGTCCTTAGCACCGCAGGGC
TCAGAAGTAAATCCCGTTCAGTCCGTTCACCAAATTCCAGTAATTGGTAA
AAGAGCGCCAGGCTGTGAAGTACTATTTCCGGGTGATCAGTGCGCACAAA
GAGGCCGGTTAGCAGTTTTAGCTGCTCTCTGATAAATTTGGCAGCCGTTT
TGTCCAGGCAAAGGTTACACAATGCCGCAATTCCGTGCACTTTTAATAGC
TGATCCTGTGTCTCCAGCGATGCCACAAATACATCCAAGGCGTCCGCCTC
CAGGAGATGCGACCAGTTGATGGGATCGTATGCAAAATTGGCCAAATTAG
CAGTCACCTGCTGCTGGGCCTCGATGTTGGTTGTCGTATAATACTCATCG
ACCAGGTGACCAATGTACTCCCGGCGGTCAATGCCCTGGGCAGGCGTCCT
CCTCTTCAATGTCCTGTGGCTGGAGAACATGTCGACTGATAACT
BO13672.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 615 | CG14881-RB | 1..612 | 630..19 | 3060 | 100 | Minus |
CG14881-PA | 861 | CG14881-RA | 1..489 | 630..142 | 2445 | 100 | Minus |
CG14881-PA | 861 | CG14881-RA | 490..524 | 53..19 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 67..678 | 630..19 | 3060 | 100 | Minus |
CG14881-RA | 966 | CG14881-RA | 67..555 | 630..142 | 2445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435690 | 354..19 | 1680 | 100 | Minus |
3R | 32079331 | 3R | 16435133..16435301 | 522..354 | 845 | 100 | Minus |
3R | 32079331 | 3R | 16434965..16435073 | 630..522 | 545 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:21:48 has no hits.
BO13672.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:53 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:11 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 1..615 | 15..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:00 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..683 | 13..630 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:07 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..683 | 13..630 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:07 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434965..16435073 | 522..630 | 100 | -> | Minus |
3R | 16435134..16435301 | 354..521 | 100 | -> | Minus |
3R | 16435356..16435695 | 13..353 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:00 Download gff for
BO13672.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260687..12260795 | 522..630 | 100 | -> | Minus |
arm_3R | 12260856..12261023 | 354..521 | 100 | -> | Minus |
arm_3R | 12261078..12261417 | 13..353 | 99 | | Minus |
BO13672.5prime Sequence
644 bp (643 high quality bases) assembled on 2006-05-08
> BO13672.5prime
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTGCAAGCTTTCTAGACC
BO13672.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 615 | CG14881-RB | 1..612 | 17..628 | 3060 | 100 | Plus |
CG14881-PA | 861 | CG14881-RA | 1..489 | 17..505 | 2445 | 100 | Plus |
CG14881-PA | 861 | CG14881-RA | 490..524 | 594..628 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 67..678 | 17..628 | 3060 | 100 | Plus |
CG14881-RA | 966 | CG14881-RA | 67..555 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435690 | 293..628 | 1680 | 100 | Plus |
3R | 32079331 | 3R | 16435133..16435301 | 125..293 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16434965..16435073 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:51:31 has no hits.
BO13672.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:54 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:12 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-PB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:15 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..683 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:36 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 67..683 | 17..634 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:36 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434965..16435073 | 17..125 | 100 | -> | Plus |
3R | 16435134..16435301 | 126..293 | 100 | -> | Plus |
3R | 16435356..16435695 | 294..634 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:15 Download gff for
BO13672.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260687..12260795 | 17..125 | 100 | -> | Plus |
arm_3R | 12260856..12261023 | 126..293 | 100 | -> | Plus |
arm_3R | 12261078..12261417 | 294..634 | 99 | | Plus |
BO13672.complete Sequence
646 bp assembled on 2006-10-11
GenBank Submission: FJ632898
> BO13672.complete
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTGCAAGCTTTCTAGACCAT
BO13672.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 615 | CG14881-PB | 1..612 | 17..628 | 3060 | 100 | Plus |
CG14881-RA | 861 | CG14881-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-RB | 1054 | CG14881-RB | 67..678 | 17..628 | 3060 | 100 | Plus |
CG14881-RA | 966 | CG14881-RA | 67..555 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16435355..16435690 | 293..628 | 1680 | 100 | Plus |
3R | 32079331 | 3R | 16435133..16435301 | 125..293 | 845 | 100 | Plus |
3R | 32079331 | 3R | 16434965..16435073 | 17..125 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 19:57:16 has no hits.
BO13672.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:18 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 1..615 | 17..632 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:14 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 41..657 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:19 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 72..678 | 22..630 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:18 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 41..657 | 17..634 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:29 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14881-RB | 72..678 | 22..630 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:29 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16434970..16435073 | 22..125 | 100 | -> | Plus |
3R | 16435134..16435301 | 126..293 | 100 | -> | Plus |
3R | 16435356..16435690 | 294..630 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:19 Download gff for
BO13672.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 12260856..12261023 | 126..293 | 100 | -> | Plus |
arm_3R | 12260692..12260795 | 22..125 | 100 | -> | Plus |
arm_3R | 12261078..12261412 | 294..630 | 99 | | Plus |
BO13672.pep Sequence
Translation from 16 to 646
> BO13672.pep
MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFA
YDPINWSHLLEADALDVFVASLETQDQLLKVHGIAALCNLCLDKTAAKFI
REQLKLLTGLFVRTDHPEIVLHSLALFYQLLEFGERTERDLLLSPAVLRT
VQEWRVKAHDERIVKLCQLLLQDFATRTEVVQLQKASPNVPTAEQQSSEA
GASGASFLDH
BO13672.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14881-PB | 204 | CG14881-PB | 1..204 | 1..204 | 1037 | 100 | Plus |
CG14881-PA | 286 | CG14881-PA | 1..164 | 1..164 | 838 | 99.4 | Plus |