Clone BO13672 Report

Search the DGRC for BO13672

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG14881-RB
Protein status:BO13672.pep: validated full length
Sequenced Size:646

Clone Sequence Records

BO13672.3prime Sequence

644 bp (643 high quality bases) assembled on 2006-05-08

> BO13672.3prime
ATGGTCTAGAAAGCTTGCACCACTTGCACCTGCTTCACTGCTTTGCTGCT
CAGCTGTCGGAACGTTTGGGGAAGCCTTTTGCAGCTGGACAACCTCTGTG
CGTGTTGCGAAATCTTGCAGCAGCAACTGACAAAGTTTAACGATGCGTTC
ATCGTGGGCCTTGACCCGCCACTCTTGCACCGTCCTTAGCACCGCAGGGC
TCAGAAGTAAATCCCGTTCAGTCCGTTCACCAAATTCCAGTAATTGGTAA
AAGAGCGCCAGGCTGTGAAGTACTATTTCCGGGTGATCAGTGCGCACAAA
GAGGCCGGTTAGCAGTTTTAGCTGCTCTCTGATAAATTTGGCAGCCGTTT
TGTCCAGGCAAAGGTTACACAATGCCGCAATTCCGTGCACTTTTAATAGC
TGATCCTGTGTCTCCAGCGATGCCACAAATACATCCAAGGCGTCCGCCTC
CAGGAGATGCGACCAGTTGATGGGATCGTATGCAAAATTGGCCAAATTAG
CAGTCACCTGCTGCTGGGCCTCGATGTTGGTTGTCGTATAATACTCATCG
ACCAGGTGACCAATGTACTCCCGGCGGTCAATGCCCTGGGCAGGCGTCCT
CCTCTTCAATGTCCTGTGGCTGGAGAACATGTCGACTGATAACT

BO13672.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 615 CG14881-RB 1..612 630..19 3060 100 Minus
CG14881-PA 861 CG14881-RA 1..489 630..142 2445 100 Minus
CG14881-PA 861 CG14881-RA 490..524 53..19 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:21:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 67..678 630..19 3060 100 Minus
CG14881-RA 966 CG14881-RA 67..555 630..142 2445 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435690 354..19 1680 100 Minus
3R 32079331 3R 16435133..16435301 522..354 845 100 Minus
3R 32079331 3R 16434965..16435073 630..522 545 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:21:48 has no hits.

BO13672.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:53 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 1..615 15..630 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:11 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 1..615 15..630 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:14:00 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..683 13..630 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:10:07 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..683 13..630 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:10:07 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 16434965..16435073 522..630 100 -> Minus
3R 16435134..16435301 354..521 100 -> Minus
3R 16435356..16435695 13..353 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:14:00 Download gff for BO13672.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260687..12260795 522..630 100 -> Minus
arm_3R 12260856..12261023 354..521 100 -> Minus
arm_3R 12261078..12261417 13..353 99   Minus

BO13672.5prime Sequence

644 bp (643 high quality bases) assembled on 2006-05-08

> BO13672.5prime
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTGCAAGCTTTCTAGACC

BO13672.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:08:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 615 CG14881-RB 1..612 17..628 3060 100 Plus
CG14881-PA 861 CG14881-RA 1..489 17..505 2445 100 Plus
CG14881-PA 861 CG14881-RA 490..524 594..628 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:51:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 67..678 17..628 3060 100 Plus
CG14881-RA 966 CG14881-RA 67..555 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435690 293..628 1680 100 Plus
3R 32079331 3R 16435133..16435301 125..293 845 100 Plus
3R 32079331 3R 16434965..16435073 17..125 545 100 Plus
Blast to na_te.dros performed on 2015-02-11 11:51:31 has no hits.

BO13672.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:54 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 1..615 17..632 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:12 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-PB 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 20:33:15 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..683 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:21:36 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 67..683 17..634 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:21:36 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 16434965..16435073 17..125 100 -> Plus
3R 16435134..16435301 126..293 100 -> Plus
3R 16435356..16435695 294..634 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 20:33:15 Download gff for BO13672.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260687..12260795 17..125 100 -> Plus
arm_3R 12260856..12261023 126..293 100 -> Plus
arm_3R 12261078..12261417 294..634 99   Plus

BO13672.complete Sequence

646 bp assembled on 2006-10-11

GenBank Submission: FJ632898

> BO13672.complete
GAAGTTATCAGTCGACATGTTCTCCAGCCACAGGACATTGAAGAGGAGGA
CGCCTGCCCAGGGCATTGACCGCCGGGAGTACATTGGTCACCTGGTCGAT
GAGTATTATACGACAACCAACATCGAGGCCCAGCAGCAGGTGACTGCTAA
TTTGGCCAATTTTGCATACGATCCCATCAACTGGTCGCATCTCCTGGAGG
CGGACGCCTTGGATGTATTTGTGGCATCGCTGGAGACACAGGATCAGCTA
TTAAAAGTGCACGGAATTGCGGCATTGTGTAACCTTTGCCTGGACAAAAC
GGCTGCCAAATTTATCAGAGAGCAGCTAAAACTGCTAACCGGCCTCTTTG
TGCGCACTGATCACCCGGAAATAGTACTTCACAGCCTGGCGCTCTTTTAC
CAATTACTGGAATTTGGTGAACGGACTGAACGGGATTTACTTCTGAGCCC
TGCGGTGCTAAGGACGGTGCAAGAGTGGCGGGTCAAGGCCCACGATGAAC
GCATCGTTAAACTTTGTCAGTTGCTGCTGCAAGATTTCGCAACACGCACA
GAGGTTGTCCAGCTGCAAAAGGCTTCCCCAAACGTTCCGACAGCTGAGCA
GCAAAGCAGTGAAGCAGGTGCAAGTGGTGCAAGCTTTCTAGACCAT

BO13672.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:57:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 615 CG14881-PB 1..612 17..628 3060 100 Plus
CG14881-RA 861 CG14881-PA 1..489 17..505 2445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:57:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-RB 1054 CG14881-RB 67..678 17..628 3060 100 Plus
CG14881-RA 966 CG14881-RA 67..555 17..505 2445 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16435355..16435690 293..628 1680 100 Plus
3R 32079331 3R 16435133..16435301 125..293 845 100 Plus
3R 32079331 3R 16434965..16435073 17..125 545 100 Plus
Blast to na_te.dros performed on 2014-11-27 19:57:16 has no hits.

BO13672.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:18 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 1..615 17..632 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:14 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 41..657 17..634 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:19 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 72..678 22..630 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:18 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 41..657 17..634 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:29 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
CG14881-RB 72..678 22..630 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:29 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16434970..16435073 22..125 100 -> Plus
3R 16435134..16435301 126..293 100 -> Plus
3R 16435356..16435690 294..630 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:19 Download gff for BO13672.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 12260856..12261023 126..293 100 -> Plus
arm_3R 12260692..12260795 22..125 100 -> Plus
arm_3R 12261078..12261412 294..630 99   Plus

BO13672.pep Sequence

Translation from 16 to 646

> BO13672.pep
MFSSHRTLKRRTPAQGIDRREYIGHLVDEYYTTTNIEAQQQVTANLANFA
YDPINWSHLLEADALDVFVASLETQDQLLKVHGIAALCNLCLDKTAAKFI
REQLKLLTGLFVRTDHPEIVLHSLALFYQLLEFGERTERDLLLSPAVLRT
VQEWRVKAHDERIVKLCQLLLQDFATRTEVVQLQKASPNVPTAEQQSSEA
GASGASFLDH

BO13672.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14881-PB 204 CG14881-PB 1..204 1..204 1037 100 Plus
CG14881-PA 286 CG14881-PA 1..164 1..164 838 99.4 Plus