Clone BO13674 Report

Search the DGRC for BO13674

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCyt-c-p-RA
Protein status:BO13674.pep: validated full length
Sequenced Size:358

Clone Sequence Records

BO13674.3prime Sequence

356 bp (355 high quality bases) assembled on 2006-05-08

> BO13674.3prime
ATGGTCTAGAAAGCTTGCCTTGGTCGCCGACTTCAGGTAGGCGATCAGAT
CGCCGCGCTCGTTGGGCTTCTTCAGACCGGCGAAGATCATCTTGGTGCCG
GGGATGTACTTCTTGGGGTTCTCCAGGTACTCGAACAGGGTGTCCTCGTT
CCAGGTGATGCCCTTGGCCTTGTTGGCGTCCGTGTACGCGAATCCGGCCG
CCTGTCCGGTCTTGCGACCGATCAGACCATGCAGATTGGGTCCAACCTTG
TGCTTGCCACCAGCCTCAACGGTGTGGCACTGGGCGCAGCGCTGCACGAA
CAGCTTCTTTCCCTTCTCAACATCACCAGCAGGAACGCCCATGTCGACTG
ATAACT

BO13674.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG17903-PA 327 Cyt-c-p-RA 1..324 342..19 1620 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:30:35
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-p-RB 634 CG17903-RB 40..363 342..19 1620 100 Minus
Cyt-c-p-RA 681 CG17903-RA 87..410 342..19 1620 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:30:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16722050..16722373 342..19 1620 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:30:33 has no hits.

BO13674.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:55 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17903-PA 1..327 15..342 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:14 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17903-PA 1..327 15..342 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 15:43:02 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 83..413 15..350 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:02:02 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 83..413 15..350 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:02:02 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16722046..16722376 15..350 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 15:43:02 Download gff for BO13674.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16722046..16722376 15..350 98   Minus

BO13674.5prime Sequence

356 bp (355 high quality bases) assembled on 2006-05-08

> BO13674.5prime
GAAGTTATCAGTCGACATGGGCGTTCCTGCTGGTGATGTTGAGAAGGGAA
AGAAGCTGTTCGTGCAGCGCTGCGCCCAGTGCCACACCGTTGAGGCTGGT
GGCAAGCACAAGGTTGGACCCAATCTGCATGGTCTGATCGGTCGCAAGAC
CGGACAGGCGGCCGGATTCGCGTACACGGACGCCAACAAGGCCAAGGGCA
TCACCTGGAACGAGGACACCCTGTTCGAGTACCTGGAGAACCCCAAGAAG
TACATCCCCGGCACCAAGATGATCTTCGCCGGTCTGAAGAAGCCCAACGA
GCGCGGCGATCTGATCGCCTACCTGAAGTCGGCGACCAAGGCAAGCTTTC
TAGACC

BO13674.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG17903-PA 327 Cyt-c-p-RA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 09:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-p-RB 634 CG17903-RB 40..363 17..340 1620 100 Plus
Cyt-c-p-RA 681 CG17903-RA 87..410 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 09:49:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16722050..16722373 17..340 1620 100 Plus
Blast to na_te.dros performed on 2015-02-02 09:49:18 has no hits.

BO13674.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:56 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17903-PA 1..327 17..344 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:15 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17903-PA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 03:55:14 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 83..413 9..344 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:18:02 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 83..413 9..344 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:18:02 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16722046..16722376 9..344 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 03:55:14 Download gff for BO13674.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16722046..16722376 9..344 98   Plus

BO13674.complete Sequence

358 bp assembled on 2007-10-17

GenBank Submission: FJ632899

> BO13674.complete
GAAGTTATCAGTCGACATGGGCGTTCCTGCTGGTGATGTTGAGAAGGGAA
AGAAGCTGTTCGTGCAGCGCTGCGCCCAGTGCCACACCGTTGAGGCTGGT
GGCAAGCACAAGGTTGGACCCAATCTGCATGGTCTGATCGGTCGCAAGAC
CGGACAGGCGGCCGGATTCGCGTACACGGACGCCAACAAGGCCAAGGGCA
TCACCTGGAACGAGGACACCCTGTTCGAGTACCTGGAGAACCCCAAGAAG
TACATCCCCGGCACCAAGATGATCTTCGCCGGTCTGAAGAAGCCCAACGA
GCGCGGCGATCTGATCGCCTACCTGAAGTCGGCGACCAAGGCAAGCTTTC
TAGACCAT

BO13674.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:03:25
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-p-RB 327 CG17903-PB 1..324 17..340 1620 100 Plus
Cyt-c-p-RA 327 CG17903-PA 1..324 17..340 1620 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-p-RB 634 CG17903-RB 40..363 17..340 1620 100 Plus
Cyt-c-p-RA 681 CG17903-RA 87..410 17..340 1620 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16722050..16722373 17..340 1620 100 Plus
Blast to na_te.dros performed on 2014-11-27 21:03:23 has no hits.

BO13674.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:02:10 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 1..327 17..344 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:15:17 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 141..471 9..344 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:47 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 87..410 17..342 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:38:23 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 145..468 17..342 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:47 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
Cyt-c-p-RA 87..410 17..342 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:47 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16722050..16722373 17..342 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:47 Download gff for BO13674.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16722050..16722373 17..342 99   Plus

BO13674.pep Sequence

Translation from 16 to 358

> BO13674.pep
MGVPAGDVEKGKKLFVQRCAQCHTVEAGGKHKVGPNLHGLIGRKTGQAAG
FAYTDANKAKGITWNEDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLI
AYLKSATKASFLDH

BO13674.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:40:26
Subject Length Description Subject Range Query Range Score Percent Strand
Cyt-c-p-PB 108 CG17903-PB 1..108 1..108 578 100 Plus
Cyt-c-p-PA 108 CG17903-PA 1..108 1..108 578 100 Plus
Cyt-c-d-PB 105 CG13263-PB 3..103 5..105 407 72.3 Plus
Cyt-c-d-PA 105 CG13263-PA 3..103 5..105 407 72.3 Plus