Clone Sequence Records
BO13675.3prime Sequence
741 bp (717 high quality bases) assembled on 2006-05-08
> BO13675.3prime
ATGGTCTAGAAAGCTTGCGAGGGTTTCGCCGACAGGCTTGATGGTCAGCT
CGTGAATCTGGACATTTGGCGGGGTCTGGATGCAGTAGCTAATGGCATCG
GCCACATCCTCAGAGCGGAGCATTGGAAAGTCGGGAATGCCAACGAGAGC
CTCCTTGTCGATGATCTCGGTGTCCACGGCACCGGGACTGATGCTCGTAA
TCTTGGTCTGGGTCTTGTTGTTGTGGAACTCCTGACGCAGCACCTCCGTG
AGAGCGGTGACTGCGTACTTCGATGGCGAATACATGCCCATGGTGATGCC
TGGGTTGTTGATCACCCGGTGTCCGGCCACACTGTTGACAATCAGGATGT
GTCCATCGTTAACATTGCGTCTCTTCAGTGATTTGAAAGCCTCGCGGGTG
CACCACGAAACGCCCAGGACATTGGTATCCAGAATGGCACGAAGATCAGC
GCCATTACCCTCGTGGGTGATGCCCACACCGAGGCGAACAATGCCAGCGT
TGTTGACCAGCACATCGGCACCGCCCAGTGTTGCATCGATCCATGCGAAC
GCATCGATCACCTCCTGCTCCTGGCTCACATCGCATTTGCGTCCATGGAA
ACGACTGGCCTGGTCCGCTGGCAGCGAAGCCTTCAGCTCCTGCAGACGGT
CCTCGCGACGTGCAAGACCCACGACCACCAAGCCCTTGGACACCAAATCC
TTGCAACAGGCAGCTCCCGATTCCCGAACTGGCGCCAGTGA
BO13675.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 756 | CG9360-RA | 55..753 | 717..19 | 3495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 141..862 | 741..19 | 3590 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763906..11764450 | 196..741 | 2680 | 99.8 | Plus |
X | 23542271 | X | 11763647..11763824 | 19..196 | 890 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:33:15 has no hits.
BO13675.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:57 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 33..756 | 18..740 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:17 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 33..756 | 18..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:34 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 142..862 | 19..740 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:55 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 142..862 | 19..740 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:55 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763647..11763823 | 19..195 | 100 | <- | Plus |
X | 11763906..11764449 | 196..740 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:34 Download gff for
BO13675.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657680..11657856 | 19..195 | 100 | <- | Plus |
arm_X | 11657939..11658482 | 196..740 | 99 | | Plus |
BO13675.5prime Sequence
785 bp (779 high quality bases) assembled on 2006-05-08
> BO13675.5prime
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCGCAAGCTTTCTAGACC
BO13675.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 756 | CG9360-RA | 1..753 | 17..769 | 3765 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 110..862 | 17..769 | 3765 | 100 | Plus |
CG3301-RC | 814 | CG3301-RC | 38..772 | 16..753 | 305 | 70.4 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..772 | 16..753 | 305 | 70.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763906..11764481 | 592..17 | 2880 | 100 | Minus |
X | 23542271 | X | 11763647..11763824 | 769..592 | 890 | 100 | Minus |
3R | 32079331 | 3R | 21275937..21276212 | 291..16 | 270 | 73.2 | Minus |
X | 23542271 | X | 8974162..8974227 | 82..17 | 210 | 87.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:53:31 has no hits.
BO13675.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:58 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:18 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-PA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:18 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..862 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:41 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..862 | 17..769 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:41 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763647..11763823 | 593..769 | 100 | <- | Minus |
X | 11763906..11764481 | 17..592 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:18 Download gff for
BO13675.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657680..11657856 | 593..769 | 100 | <- | Minus |
arm_X | 11657939..11658514 | 17..592 | 100 | | Minus |
BO13675.complete Sequence
787 bp assembled on 2006-10-11
GenBank Submission: FJ632900
> BO13675.complete
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCGCAAGCTTTCTAGACCAT
BO13675.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 756 | CG9360-PA | 1..753 | 17..769 | 3765 | 100 | Plus |
CG3301-RC | 753 | CG3301-PC | 16..275 | 32..291 | 265 | 73.5 | Plus |
CG3301-RB | 753 | CG3301-PB | 16..275 | 32..291 | 265 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-RA | 1035 | CG9360-RA | 110..862 | 17..769 | 3765 | 100 | Plus |
CG3301-RC | 814 | CG3301-RC | 38..313 | 16..291 | 270 | 73.2 | Plus |
CG3301-RB | 1101 | CG3301-RB | 38..313 | 16..291 | 270 | 73.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11763906..11764481 | 592..17 | 2880 | 100 | Minus |
X | 23542271 | X | 11763647..11763824 | 769..592 | 890 | 100 | Minus |
3R | 32079331 | 3R | 21275937..21276212 | 291..16 | 270 | 73.2 | Minus |
X | 23542271 | X | 8974162..8974227 | 82..17 | 210 | 87.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:36:22 has no hits.
BO13675.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:19 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 1..756 | 17..770 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:16 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 108..860 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:55 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..862 | 17..771 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:20 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 108..860 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:58 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9360-RA | 110..862 | 17..771 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:58 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11763645..11763823 | 593..771 | 98 | <- | Minus |
X | 11763906..11764481 | 17..592 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:55 Download gff for
BO13675.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11657678..11657856 | 593..771 | 98 | <- | Minus |
arm_X | 11657939..11658514 | 17..592 | 100 | | Minus |
BO13675.pep Sequence
Translation from 16 to 787
> BO13675.pep
MDRWLNRVAVVTGASSGIGAACCKDLVSKGLVVVGLARREDRLQELKASL
PADQASRFHGRKCDVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLGVG
ITHEGNGADLRAILDTNVLGVSWCTREAFKSLKRRNVNDGHILIVNSVAG
HRVINNPGITMGMYSPSKYAVTALTEVLRQEFHNNKTQTKITSISPGAVD
TEIIDKEALVGIPDFPMLRSEDVADAISYCIQTPPNVQIHELTIKPVGET
LASFLDH
BO13675.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9360-PA | 251 | CG9360-PA | 1..251 | 1..251 | 1286 | 100 | Plus |
CG3301-PC | 250 | CG3301-PC | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG3301-PB | 250 | CG3301-PB | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG3301-PA | 250 | CG3301-PA | 1..248 | 1..249 | 888 | 69.5 | Plus |
CG9150-PB | 251 | CG9150-PB | 1..249 | 1..249 | 645 | 49.8 | Plus |