Clone BO13675 Report

Search the DGRC for BO13675

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:136
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG9360-RA
Protein status:BO13675.pep: validated full length
Sequenced Size:787

Clone Sequence Records

BO13675.3prime Sequence

741 bp (717 high quality bases) assembled on 2006-05-08

> BO13675.3prime
ATGGTCTAGAAAGCTTGCGAGGGTTTCGCCGACAGGCTTGATGGTCAGCT
CGTGAATCTGGACATTTGGCGGGGTCTGGATGCAGTAGCTAATGGCATCG
GCCACATCCTCAGAGCGGAGCATTGGAAAGTCGGGAATGCCAACGAGAGC
CTCCTTGTCGATGATCTCGGTGTCCACGGCACCGGGACTGATGCTCGTAA
TCTTGGTCTGGGTCTTGTTGTTGTGGAACTCCTGACGCAGCACCTCCGTG
AGAGCGGTGACTGCGTACTTCGATGGCGAATACATGCCCATGGTGATGCC
TGGGTTGTTGATCACCCGGTGTCCGGCCACACTGTTGACAATCAGGATGT
GTCCATCGTTAACATTGCGTCTCTTCAGTGATTTGAAAGCCTCGCGGGTG
CACCACGAAACGCCCAGGACATTGGTATCCAGAATGGCACGAAGATCAGC
GCCATTACCCTCGTGGGTGATGCCCACACCGAGGCGAACAATGCCAGCGT
TGTTGACCAGCACATCGGCACCGCCCAGTGTTGCATCGATCCATGCGAAC
GCATCGATCACCTCCTGCTCCTGGCTCACATCGCATTTGCGTCCATGGAA
ACGACTGGCCTGGTCCGCTGGCAGCGAAGCCTTCAGCTCCTGCAGACGGT
CCTCGCGACGTGCAAGACCCACGACCACCAAGCCCTTGGACACCAAATCC
TTGCAACAGGCAGCTCCCGATTCCCGAACTGGCGCCAGTGA

BO13675.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 756 CG9360-RA 55..753 717..19 3495 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:33:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 141..862 741..19 3590 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:33:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763906..11764450 196..741 2680 99.8 Plus
X 23542271 X 11763647..11763824 19..196 890 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:33:15 has no hits.

BO13675.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:57 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 33..756 18..740 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:17 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 33..756 18..740 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:34 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 142..862 19..740 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:22:55 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 142..862 19..740 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:22:55 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11763647..11763823 19..195 100 <- Plus
X 11763906..11764449 196..740 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:34 Download gff for BO13675.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657680..11657856 19..195 100 <- Plus
arm_X 11657939..11658482 196..740 99   Plus

BO13675.5prime Sequence

785 bp (779 high quality bases) assembled on 2006-05-08

> BO13675.5prime
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCGCAAGCTTTCTAGACC

BO13675.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 15:09:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 756 CG9360-RA 1..753 17..769 3765 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 110..862 17..769 3765 100 Plus
CG3301-RC 814 CG3301-RC 38..772 16..753 305 70.4 Plus
CG3301-RB 1101 CG3301-RB 38..772 16..753 305 70.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:53:29
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763906..11764481 592..17 2880 100 Minus
X 23542271 X 11763647..11763824 769..592 890 100 Minus
3R 32079331 3R 21275937..21276212 291..16 270 73.2 Minus
X 23542271 X 8974162..8974227 82..17 210 87.9 Minus
Blast to na_te.dros performed on 2015-02-11 11:53:31 has no hits.

BO13675.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 06:09:58 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 1..756 17..770 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:58:18 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-PA 1..756 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:19:18 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..862 17..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:12:41 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..862 17..769 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 13:12:41 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11763647..11763823 593..769 100 <- Minus
X 11763906..11764481 17..592 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:19:18 Download gff for BO13675.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657680..11657856 593..769 100 <- Minus
arm_X 11657939..11658514 17..592 100   Minus

BO13675.complete Sequence

787 bp assembled on 2006-10-11

GenBank Submission: FJ632900

> BO13675.complete
GAAGTTATCAGTCGACATGGATCGTTGGCTAAATCGCGTTGCTGTTGTCA
CTGGCGCCAGTTCGGGAATCGGAGCTGCCTGTTGCAAGGATTTGGTGTCC
AAGGGCTTGGTGGTCGTGGGTCTTGCACGTCGCGAGGACCGTCTGCAGGA
GCTGAAGGCTTCGCTGCCAGCGGACCAGGCCAGTCGTTTCCATGGACGCA
AATGCGATGTGAGCCAGGAGCAGGAGGTGATCGATGCGTTCGCATGGATC
GATGCAACACTGGGCGGTGCCGATGTGCTGGTCAACAACGCTGGCATTGT
TCGCCTCGGTGTGGGCATCACCCACGAGGGTAATGGCGCTGATCTTCGTG
CCATTCTGGATACCAATGTCCTGGGCGTTTCGTGGTGCACCCGCGAGGCT
TTCAAATCACTGAAGAGACGCAATGTTAACGATGGACACATCCTGATTGT
CAACAGTGTGGCCGGACACCGGGTGATCAACAACCCAGGCATCACCATGG
GCATGTATTCGCCATCGAAGTACGCAGTCACCGCTCTCACGGAGGTGCTG
CGTCAGGAGTTCCACAACAACAAGACCCAGACCAAGATTACGAGCATCAG
TCCCGGTGCCGTGGACACCGAGATCATCGACAAGGAGGCTCTCGTTGGCA
TTCCCGACTTTCCAATGCTCCGCTCTGAGGATGTGGCCGATGCCATTAGC
TACTGCATCCAGACCCCGCCAAATGTCCAGATTCACGAGCTGACCATCAA
GCCTGTCGGCGAAACCCTCGCAAGCTTTCTAGACCAT

BO13675.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 756 CG9360-PA 1..753 17..769 3765 100 Plus
CG3301-RC 753 CG3301-PC 16..275 32..291 265 73.5 Plus
CG3301-RB 753 CG3301-PB 16..275 32..291 265 73.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:36:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-RA 1035 CG9360-RA 110..862 17..769 3765 100 Plus
CG3301-RC 814 CG3301-RC 38..313 16..291 270 73.2 Plus
CG3301-RB 1101 CG3301-RB 38..313 16..291 270 73.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11763906..11764481 592..17 2880 100 Minus
X 23542271 X 11763647..11763824 769..592 890 100 Minus
3R 32079331 3R 21275937..21276212 291..16 270 73.2 Minus
X 23542271 X 8974162..8974227 82..17 210 87.9 Minus
Blast to na_te.dros performed on 2014-11-27 14:36:22 has no hits.

BO13675.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:45:19 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 1..756 17..770 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:59:16 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 108..860 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:30:55 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..862 17..771 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:45:20 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 108..860 17..769 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:48:58 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
CG9360-RA 110..862 17..771 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:48:58 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
X 11763645..11763823 593..771 98 <- Minus
X 11763906..11764481 17..592 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:30:55 Download gff for BO13675.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11657678..11657856 593..771 98 <- Minus
arm_X 11657939..11658514 17..592 100   Minus

BO13675.pep Sequence

Translation from 16 to 787

> BO13675.pep
MDRWLNRVAVVTGASSGIGAACCKDLVSKGLVVVGLARREDRLQELKASL
PADQASRFHGRKCDVSQEQEVIDAFAWIDATLGGADVLVNNAGIVRLGVG
ITHEGNGADLRAILDTNVLGVSWCTREAFKSLKRRNVNDGHILIVNSVAG
HRVINNPGITMGMYSPSKYAVTALTEVLRQEFHNNKTQTKITSISPGAVD
TEIIDKEALVGIPDFPMLRSEDVADAISYCIQTPPNVQIHELTIKPVGET
LASFLDH

BO13675.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG9360-PA 251 CG9360-PA 1..251 1..251 1286 100 Plus
CG3301-PC 250 CG3301-PC 1..248 1..249 888 69.5 Plus
CG3301-PB 250 CG3301-PB 1..248 1..249 888 69.5 Plus
CG3301-PA 250 CG3301-PA 1..248 1..249 888 69.5 Plus
CG9150-PB 251 CG9150-PB 1..249 1..249 645 49.8 Plus